Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0016692

Physical Location & Seq

Genomic Coordinates Reverse (-)

17736879 .. 17738897

Gene Structure 2019 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G181800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGTACGGATCGAGAGGGGCAATGTTGGGAAGCGGGGGGGTTTCGGACGGGTACGAGGTCGGCTCAAAGAGACCAAGAATGATGGACTCGAATCCCTACTTCGCAGTGAGCAGCGGCACAAGTGGCTTTCAACCTTACAACTATGGTGGGGGTTATCAGCCCCCTGCCTTTCCTGTGGCCCGTCTCAGGGGGCTTCCTTTCAACTGCACTGATATCGACATCTTCAAGTTCTTTGCGGGACTGGATATTGTTGATGTGTTGCTGGTCAACAAGAATGGACGCTTCTCAGGAGAGGCCTTTGTAGTCTTTGCTGGACCCATGCAGGTTGAGTTTGCTCTTCATAGAGATCGTCAGAACATGGGGCGGAGGTATGTCGAAGTTTTCCGGTGCAAGAGGCAGGACTACTACAATGCTGTTGCAGCGGAGGTAAACTATGAAGGTATTTATGATAATGACTATCAAGGAAGTCCTCCTCCATCTAAATCAAAGAGGTTCAGCGACAAGGACCAAATGGAGTACACTGAGATATTGAAGATGCGCGGTCTCCCCTTCTCTGTTAAAAAATCTGAAATTCTTGATTTTTTTGGAGAATTCAAGGTTGTAGAAGATAGGGTGCATATTGCTTGCCGCCCGGATGGAAAATCTACTGGAGAGGCATATGTTGAGTTTGTTTCTGCGGAAGAGGCCAAAAAGGCAATGTGCAAGGACAAGATGACAATTGGGTCGAGGTACGTGGAGCTGTTTCCATCGACACCAGATGAAGCTAGACGGGCTGAATCCAGATCAAGGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0008150 GO:0010468 GO:0019219 GO:0019222 GO:0031323 GO:0043484 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

265

Amino Acids

29.75

Weight (kDa)

8.22

Isoelectric Point (pI)

46.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016692)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66010 AT5G66010
fragaria_vesca	FvH4_1g10440
malus_domestica	MD02G1117600.v1.1 MD15G1232300.v1.1
prunus_persica	Prupe.7G181800_v2.0.a1
pyrus_communis	pycom15g20670
rosa_chinensis	RchiOBHm_Chr2g0097301
rosa_laevigata	RLG00000016715
rosa_roxburghii	Rroxscaffold_2G00144800
rosa_samantha	Rh2AG112300 Rh2BG115000 Rh2CG117100
rosa_wichuraiana	Rw2G008780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	721
Acc36I	ACCTGC	1 cut(s)	313
AccII	CGCG	1 cut(s)	540
AciI	CCGC	8 cut(s)	33, 114, 236, 364, 422, 540, 628, 677
AclWI	GGATC	1 cut(s)	16
AcsI	RAATTY	2 cut(s)	570, 590
AfaI	GTAC	4 cut(s)	5, 53, 518, 731
AfiI	CCNNNNNNNGG	3 cut(s)	186, 187, 786
AgsI	TTSAA	5 cut(s)	131, 202, 226, 532, 595
AluBI	AGCT	2 cut(s)	739, 764
AluI	AGCT	2 cut(s)	739, 764
Alw26I	GTCTC	3 cut(s)	64, 188, 548
AlwI	GGATC	1 cut(s)	16
AoxI	GGCC	3 cut(s)	177, 294, 684
ApeKI	GCWGC	2 cut(s)	111, 419
ApoI	RAATTY	2 cut(s)	570, 590
AspLEI	GCGC	1 cut(s)	540
AspS9I	GGNCC	3 cut(s)	178, 314, 505
AsuC2I	CCSGG	1 cut(s)	632
AvaII	GGWCC	2 cut(s)	314, 505
BbvI	GCAGC	2 cut(s)	123, 431
BccI	CCATC	4 cut(s)	76, 484, 629, 754
BcgI	CGANNNNNNTGC	2 cut(s)	196, 230
BcnI	CCSGG	1 cut(s)	632
BcoDI	GTCTC	3 cut(s)	64, 188, 548
BfaI	CTAG	1 cut(s)	765
BfuAI	ACCTGC	1 cut(s)	313
BglI	GCCNNNNNGGC	1 cut(s)	692
BisI	GCNGC	4 cut(s)	112, 115, 420, 628
BlsI	GCNGC	4 cut(s)	113, 116, 421, 629
Bme1390I	CCNGG	1 cut(s)	632
Bme18I	GGWCC	2 cut(s)	314, 505
BmgT120I	GGNCC	3 cut(s)	178, 314, 505
BmiI	GGNNCC	1 cut(s)	316
BmrFI	CCNGG	1 cut(s)	632
BmsI	GCATC	1 cut(s)	525
BplI	GAGNNNNNCTC	2 cut(s)	47, 79
BpmI	CTGGAG	1 cut(s)	669
BpuMI	CCSGG	1 cut(s)	632
BsaAI	YACGTR	1 cut(s)	733
BsaI	GGTCTC	2 cut(s)	64, 548
BsaWI	WCCGGW	1 cut(s)	384
Bsc4I	CCNNNNNNNGG	3 cut(s)	186, 187, 786
Bse1I	ACTGG	2 cut(s)	246, 652
Bse3DI	GCAATG	2 cut(s)	27, 702
BseGI	GGATG	1 cut(s)	640
BseLI	CCNNNNNNNGG	3 cut(s)	186, 187, 786
BseMI	GCAATG	2 cut(s)	27, 702
BseMII	CTCAG	3 cut(s)	199, 300, 513
BseNI	ACTGG	2 cut(s)	246, 652
BseRI	GAGGAG	1 cut(s)	462
BseXI	GCAGC	2 cut(s)	123, 431
BsgI	GTGCAG	1 cut(s)	190
Bsh1236I	CGCG	1 cut(s)	540
BshFI	GGCC	3 cut(s)	179, 296, 686
BsiSI	CCGG	2 cut(s)	385, 632
BslFI	GGGAC	1 cut(s)	252
BslI	CCNNNNNNNGG	3 cut(s)	186, 187, 786
BsmAI	GTCTC	3 cut(s)	64, 188, 548
BsmBI	CGTCTC	1 cut(s)	188
BsmFI	GGGAC	1 cut(s)	252
BsnI	GGCC	3 cut(s)	179, 296, 686
Bso31I	GGTCTC	2 cut(s)	64, 548
Bsp143I	GATC	3 cut(s)	8, 346, 782
BspACI	CCGC	8 cut(s)	33, 114, 236, 364, 422, 540, 628, 677
BspANI	GGCC	3 cut(s)	179, 296, 686
BspCNI	CTCAG	3 cut(s)	198, 299, 514
BspFNI	CGCG	1 cut(s)	540
BspLI	GGNNCC	1 cut(s)	316
BspMI	ACCTGC	1 cut(s)	313
BspPI	GGATC	1 cut(s)	16
BspQI	GCTCTTC	1 cut(s)	342
BspTNI	GGTCTC	2 cut(s)	64, 548
BsrDI	GCAATG	2 cut(s)	27, 702
BsrI	ACTGG	2 cut(s)	246, 652
BssMI	GATC	3 cut(s)	8, 346, 782
Bst6I	CTCTTC	2 cut(s)	342, 675
BstBAI	YACGTR	1 cut(s)	733
BstC8I	GCNNGC	1 cut(s)	625
BstDEI	CTNAG	3 cut(s)	185, 286, 522
BstF5I	GGATG	1 cut(s)	640
BstFNI	CGCG	1 cut(s)	540
BstHHI	GCGC	1 cut(s)	540
BstKTI	GATC	3 cut(s)	11, 349, 785
BstMAI	GTCTC	3 cut(s)	64, 188, 548
BstMBI	GATC	3 cut(s)	8, 346, 782
BstMWI	GCNNNNNNNGC	5 cut(s)	123, 419, 683, 692, 770
BstSCI	CCNGG	1 cut(s)	630
BstUI	CGCG	1 cut(s)	540
BstV1I	GCAGC	2 cut(s)	123, 431
BsuRI	GGCC	3 cut(s)	179, 296, 686
BtsCI	GGATG	1 cut(s)	640
BtsI	GCAGTG	1 cut(s)	111
BtsIMutI	CAGTG	3 cut(s)	111, 207, 519
BveI	ACCTGC	1 cut(s)	313
Cac8I	GCNNGC	1 cut(s)	625
CfoI	GCGC	1 cut(s)	540
Cfr13I	GGNCC	3 cut(s)	178, 314, 505
CseI	GACGC	1 cut(s)	288
Csp6I	GTAC	4 cut(s)	4, 52, 517, 730
CspCI	CAANNNNNGTGG	2 cut(s)	127, 162
CviAII	CATG	2 cut(s)	319, 358
CviQI	GTAC	4 cut(s)	4, 52, 517, 730
DdeI	CTNAG	3 cut(s)	185, 286, 522
DpnI	GATC	3 cut(s)	10, 348, 784
DpnII	GATC	3 cut(s)	8, 346, 782
DrdI	GACNNNNNNGTC	1 cut(s)	721
DseDI	GACNNNNNNGTC	1 cut(s)	721
Eam1104I	CTCTTC	2 cut(s)	342, 675
EarI	CTCTTC	2 cut(s)	342, 675
EciI	GGCGGA	1 cut(s)	379
Eco147I	AGGCCT	1 cut(s)	296
Eco31I	GGTCTC	2 cut(s)	64, 548
Eco32I	GATATC	1 cut(s)	214
Eco47I	GGWCC	2 cut(s)	314, 505
EcoRI	GAATTC	1 cut(s)	590
EcoRV	GATATC	1 cut(s)	214
Esp3I	CGTCTC	1 cut(s)	188
FaeI	CATG	2 cut(s)	322, 361
FaqI	GGGAC	1 cut(s)	252
FatI	CATG	2 cut(s)	318, 357
FauI	CCCGC	2 cut(s)	26, 229
FauNDI	CATATG	1 cut(s)	658
Fnu4HI	GCNGC	4 cut(s)	112, 115, 420, 628
FokI	GGATG	1 cut(s)	647
Fsp4HI	GCNGC	4 cut(s)	112, 115, 420, 628
FspBI	CTAG	1 cut(s)	765
GlaI	GCGC	1 cut(s)	539
GluI	GCNGC	4 cut(s)	112, 115, 420, 628
GsuI	CTGGAG	1 cut(s)	669
HaeIII	GGCC	3 cut(s)	179, 296, 686
HapII	CCGG	2 cut(s)	385, 632
HgaI	GACGC	1 cut(s)	288
HhaI	GCGC	1 cut(s)	540
Hin1II	CATG	2 cut(s)	322, 361
Hin6I	GCGC	1 cut(s)	538
HinP1I	GCGC	1 cut(s)	538
HincII	GTYRAC	1 cut(s)	268
HindII	GTYRAC	1 cut(s)	268
HinfI	GANTC	3 cut(s)	86, 91, 776
HpaII	CCGG	2 cut(s)	385, 632
Hpy166II	GTNNAC	3 cut(s)	268, 430, 519
Hpy188I	TCNGA	3 cut(s)	46, 354, 568
Hpy188III	TCNNGA	4 cut(s)	12, 288, 575, 780
Hpy8I	GTNNAC	3 cut(s)	268, 430, 519
HpyAV	CCTTC	2 cut(s)	431, 559
HpyCH4IV	ACGT	1 cut(s)	732
HpyCH4V	TGCA	6 cut(s)	207, 322, 390, 419, 616, 702
HpyF10VI	GCNNNNNNNGC	5 cut(s)	123, 419, 683, 692, 770
HpyF3I	CTNAG	3 cut(s)	185, 286, 522
HpySE526I	ACGT	1 cut(s)	732
Hsp92II	CATG	2 cut(s)	322, 361
HspAI	GCGC	1 cut(s)	538
Kzo9I	GATC	3 cut(s)	8, 346, 782
LguI	GCTCTTC	1 cut(s)	342
LmnI	GCTCC	1 cut(s)	736
Lsp1109I	GCAGC	2 cut(s)	123, 431
LweI	GCATC	1 cut(s)	525
MaeI	CTAG	1 cut(s)	765
MaeII	ACGT	1 cut(s)	732
MalI	GATC	3 cut(s)	10, 348, 784
MboI	GATC	3 cut(s)	8, 346, 782
MboII	GAAGA	5 cut(s)	214, 329, 544, 617, 692
MfeI	CAATTG	1 cut(s)	717
MluCI	AATT	3 cut(s)	570, 590, 717
MlyI	GAGTC	1 cut(s)	80
MseI	TTAA	1 cut(s)	558
MspA1I	CMGCKG	2 cut(s)	114, 422
MspI	CCGG	2 cut(s)	385, 632
MspR9I	CCNGG	1 cut(s)	632
MunI	CAATTG	1 cut(s)	717
MvnI	CGCG	1 cut(s)	540
MwoI	GCNNNNNNNGC	5 cut(s)	123, 419, 683, 692, 770
NciI	CCSGG	1 cut(s)	632
NdeI	CATATG	1 cut(s)	658
NdeII	GATC	3 cut(s)	8, 346, 782
NlaIII	CATG	2 cut(s)	322, 361
NlaIV	GGNNCC	1 cut(s)	316
PceI	AGGCCT	1 cut(s)	296
PciSI	GCTCTTC	1 cut(s)	342
PfeI	GAWTC	2 cut(s)	91, 776
PkrI	GCNGC	4 cut(s)	113, 116, 421, 629
PleI	GAGTC	1 cut(s)	80
PpsI	GAGTC	1 cut(s)	80
Ppu21I	YACGTR	1 cut(s)	733
PspN4I	GGNNCC	1 cut(s)	316
PspPI	GGNCC	3 cut(s)	178, 314, 505
RsaI	GTAC	4 cut(s)	5, 53, 518, 731
RsaNI	GTAC	4 cut(s)	4, 52, 517, 730
SapI	GCTCTTC	1 cut(s)	342
SaqAI	TTAA	1 cut(s)	558
SatI	GCNGC	4 cut(s)	112, 115, 420, 628
Sau3AI	GATC	3 cut(s)	8, 346, 782
Sau96I	GGNCC	3 cut(s)	178, 314, 505
SchI	GAGTC	1 cut(s)	80
ScrFI	CCNGG	1 cut(s)	632
SfaNI	GCATC	1 cut(s)	525
SinI	GGWCC	2 cut(s)	314, 505
Sse9I	AATT	3 cut(s)	570, 590, 717
SseBI	AGGCCT	1 cut(s)	296
SsiI	CCGC	8 cut(s)	33, 114, 236, 364, 422, 540, 628, 677
SspMI	CTAG	1 cut(s)	765
StuI	AGGCCT	1 cut(s)	296
StyD4I	CCNGG	1 cut(s)	630
TaiI	ACGT	1 cut(s)	735
TaqI	TCGA	6 cut(s)	11, 89, 216, 375, 725, 749
TasI	AATT	3 cut(s)	570, 590, 717
TatI	WGTACW	1 cut(s)	516
TauI	GCSGC	2 cut(s)	117, 630
TfiI	GAWTC	2 cut(s)	91, 776
Tru1I	TTAA	1 cut(s)	558
Tru9I	TTAA	1 cut(s)	558
TscAI	CASTG	3 cut(s)	111, 214, 526
TseI	GCWGC	2 cut(s)	111, 419
TspDTI	ATGAA	3 cut(s)	329, 450, 774
TspGWI	ACGGA	1 cut(s)	21
TspRI	CASTG	3 cut(s)	111, 214, 526
VpaK11BI	GGWCC	2 cut(s)	314, 505
XapI	RAATTY	2 cut(s)	570, 590
XspI	CTAG	1 cut(s)	765

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.