MD02G1117600.v1.1

Heterogeneous nuclear ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0016692
Physical Location & Seq
Forward (+)
9573169 .. 9575052
1884 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1117600.v1.1.491

Sequence Viewer

Length: 789 bp
ATGTACGGATCGAGAGGGGCAATGTTGGGAAGCGGGGGGGTTTCGGACGGGTACGAGGTCGGCTCAAAGAGACCAAGAATGATGGATCCCTACTTCGCAGTGAGCAGCGGCGCAAGTGGCTTTCATCCTTATGGCTATGGTGGGAATTTTCAGCCCCCAGTTTTTCCAGTGGCCCGTCTCAGGGGACTTCCATTCAACTGCACGGATATTGACATCTTCAAGTTCTTTGCTGGACTGGATATTGTTGATGTGTTGCTGGTCAACAAGGGTGGACGGTTCTCAGGAGAGGCCTTTGTTGTTTTTGCTGGACCCATGCAGGTTGAGCTTGCTCTACAGAGAGATCGGCAGAACATGGGTCGTAGGTATGTCGAAGTTTTCACTTGCAAGAGGCAGGAGTACTACAAGGCTGTTGCAGCGGAGGTAAACCATGAAGGAATTTATGATAATGACTATCAAGCAAGCCCTCCTCCAACTAAATCAAAGAGGTTCAGCGACAAGGAGAAAATGGAGTACACTGAAATATTGAAGATGCGCGGCCTCCCCTTCTCAGCAGAAAAATCTGAAATTCTTGAGTTTTTCGGAGAATTCAAGGTTGTAGAAGATAGGGTGCATATTGCCTGCCGCCCGGATGGAAAAGCTACCGGAGAGGCATATGTGGAGTTTGTCTCTGCAGAAGAGGCGAAAAGGGCAATGTGCAAGGACAAGATGACAATTGGTTCGAGGTACGTGGAGCTTTTTCCATCGACACCAGATGAAGCTAGACGGGCTGAATCCCGATCAAGGCAGTGA

Protein Analysis

263

Amino Acids

29.43

Weight (kDa)

7.62

Isoelectric Point (pI)

48.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 177 - 242 2e-07 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016692)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66010 AT5G66010
fragaria_vesca FvH4_1g10440
malus_domestica MD02G1117600.v1.1 MD15G1232300.v1.1
prunus_persica Prupe.7G181800_v2.0.a1
pyrus_communis pycom15g20670
rosa_chinensis RchiOBHm_Chr2g0097301
rosa_laevigata RLG00000016715
rosa_roxburghii Rroxscaffold_2G00144800
rosa_samantha Rh2AG112300 Rh2BG115000 Rh2CG117100
rosa_wichuraiana Rw2G008780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 307
AccII CGCG 1 cut(s) 534
AciI CCGC 5 cut(s) 33, 108, 416, 534, 622
AclWI GGATC 3 cut(s) 16, 80, 93
AcsI RAATTY 4 cut(s) 145, 435, 564, 584
AfaI GTAC 5 cut(s) 5, 53, 398, 512, 725
AfiI CCNNNNNNNGG 3 cut(s) 180, 181, 780
AgsI TTSAA 4 cut(s) 196, 220, 526, 589
AluBI AGCT 4 cut(s) 325, 638, 733, 758
AluI AGCT 4 cut(s) 325, 638, 733, 758
Alw26I GTCTC 3 cut(s) 64, 182, 670
AlwI GGATC 3 cut(s) 16, 80, 93
AoxI GGCC 3 cut(s) 171, 288, 535
ApeKI GCWGC 2 cut(s) 105, 413
ApoI RAATTY 4 cut(s) 145, 435, 564, 584
ArsI GACNNNNNNTTYG 2 cut(s) 700, 732
AspLEI GCGC 2 cut(s) 113, 534
AspS9I GGNCC 2 cut(s) 172, 308
AsuC2I CCSGG 1 cut(s) 626
AvaII GGWCC 1 cut(s) 308
BamHI GGATCC 1 cut(s) 85
BbvI GCAGC 2 cut(s) 117, 425
BccI CCATC 3 cut(s) 76, 623, 748
BcnI CCSGG 1 cut(s) 626
BcoDI GTCTC 3 cut(s) 64, 182, 670
BfaI CTAG 1 cut(s) 759
BfmI CTRYAG 2 cut(s) 332, 669
BfuAI ACCTGC 1 cut(s) 307
BisI GCNGC 5 cut(s) 106, 109, 414, 535, 622
BlsI GCNGC 5 cut(s) 107, 110, 415, 536, 623
BmcAI AGTACT 1 cut(s) 398
Bme1390I CCNGG 1 cut(s) 626
Bme18I GGWCC 1 cut(s) 308
BmgT120I GGNCC 2 cut(s) 172, 308
BmiI GGNNCC 2 cut(s) 87, 310
BmrFI CCNGG 1 cut(s) 626
BmrI ACTGGG 1 cut(s) 152
BmsI GCATC 1 cut(s) 519
BmuI ACTGGG 1 cut(s) 152
BplI GAGNNNNNCTC 4 cut(s) 47, 79, 650, 682
BpuEI CTTGAG 1 cut(s) 590
BpuMI CCSGG 1 cut(s) 626
BsaAI YACGTR 1 cut(s) 727
BsaI GGTCTC 1 cut(s) 64
BsaWI WCCGGW 1 cut(s) 641
Bsc4I CCNNNNNNNGG 3 cut(s) 180, 181, 780
Bse1I ACTGG 3 cut(s) 158, 167, 240
Bse3DI GCAATG 2 cut(s) 27, 696
BseGI GGATG 2 cut(s) 124, 634
BseLI CCNNNNNNNGG 3 cut(s) 180, 181, 780
BseMI GCAATG 2 cut(s) 27, 696
BseMII CTCAG 3 cut(s) 193, 294, 561
BseNI ACTGG 3 cut(s) 158, 167, 240
BseRI GAGGAG 1 cut(s) 456
BseXI GCAGC 2 cut(s) 117, 425
BsgI GTGCAG 1 cut(s) 184
Bsh1236I CGCG 1 cut(s) 534
BshFI GGCC 3 cut(s) 173, 290, 537
BsiSI CCGG 2 cut(s) 626, 642
BslFI GGGAC 1 cut(s) 198
BslI CCNNNNNNNGG 3 cut(s) 180, 181, 780
BsmAI GTCTC 3 cut(s) 64, 182, 670
BsmBI CGTCTC 1 cut(s) 182
BsmFI GGGAC 1 cut(s) 198
BsnI GGCC 3 cut(s) 173, 290, 537
Bso31I GGTCTC 1 cut(s) 64
Bsp143I GATC 4 cut(s) 8, 85, 340, 776
BspACI CCGC 5 cut(s) 33, 108, 416, 534, 622
BspANI GGCC 3 cut(s) 173, 290, 537
BspCNI CTCAG 3 cut(s) 192, 293, 560
BspFNI CGCG 1 cut(s) 534
BspLI GGNNCC 2 cut(s) 87, 310
BspMAI CTGCAG 1 cut(s) 673
BspMI ACCTGC 1 cut(s) 307
BspPI GGATC 3 cut(s) 16, 80, 93
BspTNI GGTCTC 1 cut(s) 64
BsrDI GCAATG 2 cut(s) 27, 696
BsrI ACTGG 3 cut(s) 158, 167, 240
BssMI GATC 4 cut(s) 8, 85, 340, 776
Bst4CI ACNGT 1 cut(s) 276
Bst6I CTCTTC 1 cut(s) 669
BstBAI YACGTR 1 cut(s) 727
BstC8I GCNNGC 3 cut(s) 327, 460, 619
BstDEI CTNAG 3 cut(s) 179, 280, 547
BstF5I GGATG 2 cut(s) 124, 634
BstFNI CGCG 1 cut(s) 534
BstHHI GCGC 2 cut(s) 113, 534
BstKTI GATC 4 cut(s) 11, 88, 343, 779
BstMAI GTCTC 3 cut(s) 64, 182, 670
BstMBI GATC 4 cut(s) 8, 85, 340, 776
BstMWI GCNNNNNNNGC 6 cut(s) 117, 322, 413, 677, 686, 764
BstSCI CCNGG 1 cut(s) 624
BstSFI CTRYAG 2 cut(s) 332, 669
BstUI CGCG 1 cut(s) 534
BstV1I GCAGC 2 cut(s) 117, 425
BstX2I RGATCY 1 cut(s) 85
BstYI RGATCY 1 cut(s) 85
BsuRI GGCC 3 cut(s) 173, 290, 537
BtsCI GGATG 2 cut(s) 124, 634
BtsI GCAGTG 1 cut(s) 105
BtsIMutI CAGTG 3 cut(s) 105, 174, 513
BveI ACCTGC 1 cut(s) 307
Cac8I GCNNGC 3 cut(s) 327, 460, 619
CfoI GCGC 2 cut(s) 113, 534
Cfr13I GGNCC 2 cut(s) 172, 308
Csp6I GTAC 5 cut(s) 4, 52, 397, 511, 724
CspCI CAANNNNNGTGG 2 cut(s) 250, 285
CviAII CATG 3 cut(s) 313, 352, 428
CviQI GTAC 5 cut(s) 4, 52, 397, 511, 724
DdeI CTNAG 3 cut(s) 179, 280, 547
DpnI GATC 4 cut(s) 10, 87, 342, 778
DpnII GATC 4 cut(s) 8, 85, 340, 776
Eam1104I CTCTTC 1 cut(s) 669
EarI CTCTTC 1 cut(s) 669
Eco147I AGGCCT 1 cut(s) 290
Eco31I GGTCTC 1 cut(s) 64
Eco47I GGWCC 1 cut(s) 308
EcoRI GAATTC 1 cut(s) 584
Esp3I CGTCTC 1 cut(s) 182
FaeI CATG 3 cut(s) 316, 355, 431
FaqI GGGAC 1 cut(s) 198
FatI CATG 3 cut(s) 312, 351, 427
FauI CCCGC 1 cut(s) 26
FauNDI CATATG 1 cut(s) 652
Fnu4HI GCNGC 5 cut(s) 106, 109, 414, 535, 622
FokI GGATG 2 cut(s) 111, 641
Fsp4HI GCNGC 5 cut(s) 106, 109, 414, 535, 622
FspBI CTAG 1 cut(s) 759
GlaI GCGC 2 cut(s) 112, 533
GluI GCNGC 5 cut(s) 106, 109, 414, 535, 622
HaeIII GGCC 3 cut(s) 173, 290, 537
HapII CCGG 2 cut(s) 626, 642
HhaI GCGC 2 cut(s) 113, 534
Hin1II CATG 3 cut(s) 316, 355, 431
Hin6I GCGC 2 cut(s) 111, 532
HinP1I GCGC 2 cut(s) 111, 532
HincII GTYRAC 1 cut(s) 262
HindII GTYRAC 1 cut(s) 262
HinfI GANTC 1 cut(s) 770
HpaII CCGG 2 cut(s) 626, 642
Hpy166II GTNNAC 4 cut(s) 262, 272, 424, 513
Hpy188I TCNGA 3 cut(s) 46, 562, 581
Hpy188III TCNNGA 4 cut(s) 12, 282, 569, 774
Hpy8I GTNNAC 4 cut(s) 262, 272, 424, 513
HpyAV CCTTC 2 cut(s) 425, 553
HpyCH4III ACNGT 1 cut(s) 276
HpyCH4IV ACGT 1 cut(s) 726
HpyCH4V TGCA 7 cut(s) 201, 316, 384, 413, 610, 671, 696
HpyF10VI GCNNNNNNNGC 6 cut(s) 117, 322, 413, 677, 686, 764
HpyF3I CTNAG 3 cut(s) 179, 280, 547
HpySE526I ACGT 1 cut(s) 726
Hsp92II CATG 3 cut(s) 316, 355, 431
HspAI GCGC 2 cut(s) 111, 532
Kzo9I GATC 4 cut(s) 8, 85, 340, 776
LmnI GCTCC 1 cut(s) 730
Lsp1109I GCAGC 2 cut(s) 117, 425
LweI GCATC 1 cut(s) 519
MaeI CTAG 1 cut(s) 759
MaeII ACGT 1 cut(s) 726
MalI GATC 4 cut(s) 10, 87, 342, 778
MboI GATC 4 cut(s) 8, 85, 340, 776
MboII GAAGA 4 cut(s) 208, 538, 611, 686
MfeI CAATTG 1 cut(s) 711
MflI RGATCY 1 cut(s) 85
MluCI AATT 5 cut(s) 145, 435, 564, 584, 711
MmeI TCCRAC 1 cut(s) 494
MslI CAYNNNNRTG 1 cut(s) 129
MspA1I CMGCKG 2 cut(s) 108, 416
MspI CCGG 2 cut(s) 626, 642
MspR9I CCNGG 1 cut(s) 626
MunI CAATTG 1 cut(s) 711
MvnI CGCG 1 cut(s) 534
MwoI GCNNNNNNNGC 6 cut(s) 117, 322, 413, 677, 686, 764
NciI CCSGG 1 cut(s) 626
NdeI CATATG 1 cut(s) 652
NdeII GATC 4 cut(s) 8, 85, 340, 776
NlaIII CATG 3 cut(s) 316, 355, 431
NlaIV GGNNCC 2 cut(s) 87, 310
PceI AGGCCT 1 cut(s) 290
PfeI GAWTC 1 cut(s) 770
PkrI GCNGC 5 cut(s) 107, 110, 415, 536, 623
Ppu21I YACGTR 1 cut(s) 727
PspN4I GGNNCC 2 cut(s) 87, 310
PspPI GGNCC 2 cut(s) 172, 308
PstI CTGCAG 1 cut(s) 673
PsuI RGATCY 1 cut(s) 85
RsaI GTAC 5 cut(s) 5, 53, 398, 512, 725
RsaNI GTAC 5 cut(s) 4, 52, 397, 511, 724
RseI CAYNNNNRTG 1 cut(s) 129
SatI GCNGC 5 cut(s) 106, 109, 414, 535, 622
Sau3AI GATC 4 cut(s) 8, 85, 340, 776
Sau96I GGNCC 2 cut(s) 172, 308
ScaI AGTACT 1 cut(s) 398
ScrFI CCNGG 1 cut(s) 626
SfaNI GCATC 1 cut(s) 519
SfcI CTRYAG 2 cut(s) 332, 669
SinI GGWCC 1 cut(s) 308
SmiMI CAYNNNNRTG 1 cut(s) 129
SmlI CTYRAG 1 cut(s) 569
SmoI CTYRAG 1 cut(s) 569
Sse9I AATT 5 cut(s) 145, 435, 564, 584, 711
SseBI AGGCCT 1 cut(s) 290
SsiI CCGC 5 cut(s) 33, 108, 416, 534, 622
SspI AATATT 1 cut(s) 522
SspMI CTAG 1 cut(s) 759
StuI AGGCCT 1 cut(s) 290
StyD4I CCNGG 1 cut(s) 624
TaaI ACNGT 1 cut(s) 276
TaiI ACGT 1 cut(s) 729
TaqI TCGA 4 cut(s) 11, 369, 719, 743
TasI AATT 5 cut(s) 145, 435, 564, 584, 711
TatI WGTACW 2 cut(s) 396, 510
TauI GCSGC 3 cut(s) 111, 537, 624
TfiI GAWTC 1 cut(s) 770
TscAI CASTG 3 cut(s) 105, 174, 520
TseI GCWGC 2 cut(s) 105, 413
TspDTI ATGAA 3 cut(s) 113, 444, 768
TspGWI ACGGA 2 cut(s) 21, 218
TspRI CASTG 3 cut(s) 105, 174, 520
VpaK11BI GGWCC 1 cut(s) 308
XapI RAATTY 4 cut(s) 145, 435, 564, 584
XspI CTAG 1 cut(s) 759
ZrmI AGTACT 1 cut(s) 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.