Rh2BG115000

Heterogeneous nuclear ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0016692
Physical Location & Seq
Forward (+)
9739942 .. 9743615
3674 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG115000.1

Sequence Viewer

Length: 783 bp
ATGTTGGGAGGCGGGGGGTTATCGGACGTCTACGAGGTCGGCTCAAAGAGACCAAGAATGATGGAATCAAATCCCTACTTCGCAGTTGGCAGCAGTGCAAGGGGCTTTCAACCTTTCAGCGGCTATGGTGGCGGCTTCCAGCTTCCTGCTTTTCCCGTGGTCCGTCTCAGGGGGCTTCCTTTCAACTGCACAGACATTGACATCTTCAAGTTCTTTGCTGGACTGGATATTGTGGATGTGTTGCTGGTCAACAAGGGTGGACGCTTCTCAGGAGAGGCCTTTGTTGTCTTTGCTGGACCTTTGCAGGTTGAGTTAGCTCTTCAAAGAGATCGGCAGAACATGGGGCGTAGGTATGTTGAAGTTTTCACATGCAAGAGGCAGGACTATTACAATGCTGTTGCAGCAGAGGTCAGCTATGAAGGGATTTATGACAATGATTTTCAAGGAAGTCCTCCTCCAGCTAAATCATCATCAAAGCGGTTCAATGATAAGGAAAAAATGGAATACACTGAGATATTGAAGTTGCGTGGTCTACCATTCTCTGTAAAAAGATCTCAAATTATTGATTTTTTTGGAGATTTCAAGGTCGTTGAAGATAGAGTACATATTGCTTGCCGCCCAGATGGAAAAGCTACCGGAGAGGCATACGTGGAGTTTGTTTCGGCAGAAGAGGCTAAAAAGGCAATGTCCAAGGACAAGATGATGATTGGGTCTAGGTATGTGGAGCTGTTTCCATCAACACCAGATGAAGCTCGACGGGCAGAATCCAGATCAAGGCAGTGA

Protein Analysis

260

Amino Acids

29.13

Weight (kDa)

8.63

Isoelectric Point (pI)

56.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 175 - 241 8.3e-08 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016692)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66010 AT5G66010
fragaria_vesca FvH4_1g10440
malus_domestica MD02G1117600.v1.1 MD15G1232300.v1.1
prunus_persica Prupe.7G181800_v2.0.a1
pyrus_communis pycom15g20670
rosa_chinensis RchiOBHm_Chr2g0097301
rosa_laevigata RLG00000016715
rosa_roxburghii Rroxscaffold_2G00144800
rosa_samantha Rh2AG112300 Rh2BG115000 Rh2CG117100
rosa_wichuraiana Rw2G008780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 30
Acc36I ACCTGC 1 cut(s) 295
AccI GTMKAC 2 cut(s) 30, 532
AciI CCGC 5 cut(s) 12, 120, 132, 478, 616
AcyI GRCGYC 1 cut(s) 27
AfaI GTAC 1 cut(s) 603
AfiI CCNNNNNNNGG 3 cut(s) 119, 169, 774
AluBI AGCT 7 cut(s) 142, 317, 414, 461, 632, 727, 752
AluI AGCT 7 cut(s) 142, 317, 414, 461, 632, 727, 752
Alw26I GTCTC 2 cut(s) 43, 170
AoxI GGCC 1 cut(s) 276
ApeKI GCWGC 2 cut(s) 90, 401
AspS9I GGNCC 2 cut(s) 160, 296
AvaII GGWCC 2 cut(s) 160, 296
BarI GAAGNNNNNNTAC 2 cut(s) 585, 617
BbvI GCAGC 2 cut(s) 102, 413
BccI CCATC 3 cut(s) 55, 617, 742
BcoDI GTCTC 2 cut(s) 43, 170
BfaI CTAG 1 cut(s) 714
BfuAI ACCTGC 1 cut(s) 295
BglII AGATCT 1 cut(s) 551
BisI GCNGC 5 cut(s) 91, 121, 133, 402, 616
BlsI GCNGC 5 cut(s) 92, 122, 134, 403, 617
Bme18I GGWCC 2 cut(s) 160, 296
BmgT120I GGNCC 2 cut(s) 160, 296
BplI GAGNNNNNCTC 2 cut(s) 26, 58
BpmI CTGGAG 1 cut(s) 441
BsaAI YACGTR 1 cut(s) 649
BsaHI GRCGYC 1 cut(s) 27
BsaI GGTCTC 1 cut(s) 43
BsaJI CCNNGG 2 cut(s) 156, 690
BsaWI WCCGGW 1 cut(s) 635
Bsc4I CCNNNNNNNGG 3 cut(s) 119, 169, 774
Bse1I ACTGG 1 cut(s) 228
Bse3DI GCAATG 1 cut(s) 690
BseDI CCNNGG 2 cut(s) 156, 690
BseGI GGATG 1 cut(s) 241
BseLI CCNNNNNNNGG 3 cut(s) 119, 169, 774
BseMI GCAATG 1 cut(s) 690
BseMII CTCAG 3 cut(s) 181, 282, 501
BseNI ACTGG 1 cut(s) 228
BseRI GAGGAG 1 cut(s) 444
BseXI GCAGC 2 cut(s) 102, 413
BsgI GTGCAG 1 cut(s) 172
BshFI GGCC 1 cut(s) 278
BsiSI CCGG 1 cut(s) 636
BslI CCNNNNNNNGG 3 cut(s) 119, 169, 774
BsmAI GTCTC 2 cut(s) 43, 170
BsmBI CGTCTC 1 cut(s) 170
BsnI GGCC 1 cut(s) 278
Bso31I GGTCTC 1 cut(s) 43
Bsp143I GATC 3 cut(s) 328, 551, 770
BspACI CCGC 5 cut(s) 12, 120, 132, 478, 616
BspANI GGCC 1 cut(s) 278
BspCNI CTCAG 3 cut(s) 180, 281, 502
BspMI ACCTGC 1 cut(s) 295
BspQI GCTCTTC 1 cut(s) 324
BspTNI GGTCTC 1 cut(s) 43
BsrDI GCAATG 1 cut(s) 690
BsrI ACTGG 1 cut(s) 228
BssECI CCNNGG 2 cut(s) 156, 690
BssMI GATC 3 cut(s) 328, 551, 770
BssNI GRCGYC 1 cut(s) 27
BssT1I CCWWGG 1 cut(s) 690
Bst6I CTCTTC 2 cut(s) 324, 663
BstACI GRCGYC 1 cut(s) 27
BstBAI YACGTR 1 cut(s) 649
BstC8I GCNNGC 1 cut(s) 613
BstDEI CTNAG 3 cut(s) 167, 268, 510
BstDSI CCRYGG 1 cut(s) 156
BstF5I GGATG 1 cut(s) 241
BstKTI GATC 3 cut(s) 331, 554, 773
BstMAI GTCTC 2 cut(s) 43, 170
BstMBI GATC 3 cut(s) 328, 551, 770
BstMWI GCNNNNNNNGC 5 cut(s) 129, 401, 671, 680, 758
BstNSI RCATGY 1 cut(s) 372
BstV1I GCAGC 2 cut(s) 102, 413
BstX2I RGATCY 1 cut(s) 551
BstYI RGATCY 1 cut(s) 551
BsuRI GGCC 1 cut(s) 278
BtgI CCRYGG 1 cut(s) 156
BtsCI GGATG 1 cut(s) 241
BtsI GCAGTG 1 cut(s) 100
BtsIMutI CAGTG 2 cut(s) 100, 507
BveI ACCTGC 1 cut(s) 295
Cac8I GCNNGC 1 cut(s) 613
Cfr13I GGNCC 2 cut(s) 160, 296
CseI GACGC 1 cut(s) 270
Csp6I GTAC 1 cut(s) 602
CspCI CAANNNNNGTGG 2 cut(s) 238, 273
CviAII CATG 2 cut(s) 340, 369
CviQI GTAC 1 cut(s) 602
DdeI CTNAG 3 cut(s) 167, 268, 510
DpnI GATC 3 cut(s) 330, 553, 772
DpnII GATC 3 cut(s) 328, 551, 770
Eam1104I CTCTTC 2 cut(s) 324, 663
EarI CTCTTC 2 cut(s) 324, 663
Eco130I CCWWGG 1 cut(s) 690
Eco147I AGGCCT 1 cut(s) 278
Eco31I GGTCTC 1 cut(s) 43
Eco47I GGWCC 2 cut(s) 160, 296
EcoT14I CCWWGG 1 cut(s) 690
ErhI CCWWGG 1 cut(s) 690
Esp3I CGTCTC 1 cut(s) 170
FaeI CATG 2 cut(s) 343, 372
FaiI YATR 9 cut(s) 126, 341, 354, 370, 417, 429, 606, 646, 720
FatI CATG 2 cut(s) 339, 368
FauI CCCGC 1 cut(s) 5
FblI GTMKAC 2 cut(s) 30, 532
Fnu4HI GCNGC 5 cut(s) 91, 121, 133, 402, 616
FokI GGATG 1 cut(s) 248
Fsp4HI GCNGC 5 cut(s) 91, 121, 133, 402, 616
FspBI CTAG 1 cut(s) 714
GluI GCNGC 5 cut(s) 91, 121, 133, 402, 616
GsuI CTGGAG 1 cut(s) 441
HaeIII GGCC 1 cut(s) 278
HapII CCGG 1 cut(s) 636
HgaI GACGC 1 cut(s) 270
Hin1I GRCGYC 1 cut(s) 27
Hin1II CATG 2 cut(s) 343, 372
HincII GTYRAC 1 cut(s) 250
HindII GTYRAC 1 cut(s) 250
HinfI GANTC 2 cut(s) 65, 764
HpaII CCGG 1 cut(s) 636
Hpy166II GTNNAC 4 cut(s) 31, 250, 260, 533
Hpy188I TCNGA 1 cut(s) 25
Hpy188III TCNNGA 2 cut(s) 270, 768
Hpy8I GTNNAC 4 cut(s) 31, 250, 260, 533
Hpy99I CGWCG 1 cut(s) 759
HpyAV CCTTC 1 cut(s) 413
HpyCH4IV ACGT 2 cut(s) 27, 648
HpyCH4V TGCA 5 cut(s) 98, 189, 304, 372, 401
HpyF10VI GCNNNNNNNGC 5 cut(s) 129, 401, 671, 680, 758
HpyF3I CTNAG 3 cut(s) 167, 268, 510
HpySE526I ACGT 2 cut(s) 27, 648
Hsp92I GRCGYC 1 cut(s) 27
Hsp92II CATG 2 cut(s) 343, 372
Kzo9I GATC 3 cut(s) 328, 551, 770
LguI GCTCTTC 1 cut(s) 324
LmnI GCTCC 1 cut(s) 724
Lsp1109I GCAGC 2 cut(s) 102, 413
MaeI CTAG 1 cut(s) 714
MaeII ACGT 2 cut(s) 27, 648
MalI GATC 3 cut(s) 330, 553, 772
MboI GATC 3 cut(s) 328, 551, 770
MboII GAAGA 4 cut(s) 196, 311, 605, 680
MflI RGATCY 1 cut(s) 551
MluCI AATT 1 cut(s) 558
MnlI CCTC 8 cut(s) 28, 268, 369, 400, 462, 465, 634, 664
MspA1I CMGCKG 1 cut(s) 120
MspI CCGG 1 cut(s) 636
MwoI GCNNNNNNNGC 5 cut(s) 129, 401, 671, 680, 758
NdeII GATC 3 cut(s) 328, 551, 770
NlaIII CATG 2 cut(s) 343, 372
NspI RCATGY 1 cut(s) 372
PceI AGGCCT 1 cut(s) 278
PciSI GCTCTTC 1 cut(s) 324
PfeI GAWTC 2 cut(s) 65, 764
PkrI GCNGC 5 cut(s) 92, 122, 134, 403, 617
Ppu21I YACGTR 1 cut(s) 649
PspPI GGNCC 2 cut(s) 160, 296
PsuI RGATCY 1 cut(s) 551
RsaI GTAC 1 cut(s) 603
RsaNI GTAC 1 cut(s) 602
SapI GCTCTTC 1 cut(s) 324
SatI GCNGC 5 cut(s) 91, 121, 133, 402, 616
Sau3AI GATC 3 cut(s) 328, 551, 770
Sau96I GGNCC 2 cut(s) 160, 296
SinI GGWCC 2 cut(s) 160, 296
Sse9I AATT 1 cut(s) 558
SseBI AGGCCT 1 cut(s) 278
SsiI CCGC 5 cut(s) 12, 120, 132, 478, 616
SspMI CTAG 1 cut(s) 714
StuI AGGCCT 1 cut(s) 278
StyI CCWWGG 1 cut(s) 690
TaiI ACGT 2 cut(s) 30, 651
TaqI TCGA 1 cut(s) 754
TasI AATT 1 cut(s) 558
TatI WGTACW 1 cut(s) 601
TauI GCSGC 3 cut(s) 123, 135, 618
TfiI GAWTC 2 cut(s) 65, 764
TscAI CASTG 2 cut(s) 100, 514
TseI GCWGC 2 cut(s) 90, 401
TspDTI ATGAA 2 cut(s) 432, 762
TspGWI ACGGA 1 cut(s) 152
TspRI CASTG 2 cut(s) 100, 514
VpaK11BI GGWCC 2 cut(s) 160, 296
XceI RCATGY 1 cut(s) 372
XmiI GTMKAC 2 cut(s) 30, 532
XspI CTAG 1 cut(s) 714
ZraI GACGTC 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.