Rw2G008780

Heterogeneous nuclear ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0016692
Physical Location & Seq
Forward (+)
8798042 .. 8799434
1393 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G008780.1

Sequence Viewer

Length: 804 bp
ATGTACGGATCAAGAGGGGCAATGTTGGGAGGCGGGGGGTTATCGGACGTCTACGAGGTCGGCTCAAAGAGACCAAGAATGATGGAATCAAATCCCTACTTCGCAGTTGGCAGCAGTGCAAGGGGCTTTCAACCTTTCGGCGGCTATGGTGGCGGCTTCCAGCTTCCTGCTTTTCCCGTGGTCCGTCTTAGGGGGCTTCCTTTCAACTGCACAGACATTGACATCTTCAAGTTCTTTGCTGGACTGGATATTGTGGATGTGTTGCTGGTCAACAAGGGTGGACGCTTCTCAGGAGAGGCCTTTGTTGTCTTTGCTGGACCTTTGCAGGTTGAGTTAGCTCTTCAAAGAGATCGGCAGAACATGGGGCGTAGGTATGTTGAAGTTTTCACATGCAAGAGGCAGGATTACTACAATGCTGTTGCAGCAGAGGTCAGCTATGAAGGGATTTATGACAATGATTTTCAAGGAAGTCCTCCTCCAGCTAAATCATCATCAAAGCGGTTCAATGATAAGGAAAAAATGGAATACACTGAGATATTGAAGTTGCGTGGTCTACCATTCTCTGTAAAAAGATCTCAAATTATTGATTTTTTTGGAGATTTCAAGGTCGTTGAAGATAGAGTACATATTGCTTGCCGCCCAGATGGAAAAGCTACCGGAGAGGCATATGTGGAGTTTGTTTCTGCAGAAGAGGCTAAAAAGGCAATGTCCAAGGACAAGATGATGATTGGGTCCAGGTATGTGGAGCTGTTTCCATCAACACCAGATGAAGCTCGACGGGCAGAATCCAGATCAAGGCAGTGA

Protein Analysis

267

Amino Acids

29.82

Weight (kDa)

8.83

Isoelectric Point (pI)

55.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 182 - 248 8.7e-08 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016692)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66010 AT5G66010
fragaria_vesca FvH4_1g10440
malus_domestica MD02G1117600.v1.1 MD15G1232300.v1.1
prunus_persica Prupe.7G181800_v2.0.a1
pyrus_communis pycom15g20670
rosa_chinensis RchiOBHm_Chr2g0097301
rosa_laevigata RLG00000016715
rosa_roxburghii Rroxscaffold_2G00144800
rosa_samantha Rh2AG112300 Rh2BG115000 Rh2CG117100
rosa_wichuraiana Rw2G008780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 51
Acc36I ACCTGC 1 cut(s) 316
AccI GTMKAC 2 cut(s) 51, 553
AciI CCGC 5 cut(s) 33, 141, 153, 499, 637
AclWI GGATC 1 cut(s) 16
AcyI GRCGYC 1 cut(s) 48
AfaI GTAC 2 cut(s) 5, 624
AfiI CCNNNNNNNGG 3 cut(s) 140, 190, 795
AjnI CCWGG 1 cut(s) 734
AluBI AGCT 7 cut(s) 163, 338, 435, 482, 653, 748, 773
AluI AGCT 7 cut(s) 163, 338, 435, 482, 653, 748, 773
Alw26I GTCTC 1 cut(s) 64
AlwI GGATC 1 cut(s) 16
AoxI GGCC 1 cut(s) 297
ApeKI GCWGC 2 cut(s) 111, 422
AspS9I GGNCC 3 cut(s) 181, 317, 732
AvaII GGWCC 3 cut(s) 181, 317, 732
BarI GAAGNNNNNNTAC 2 cut(s) 606, 638
BbvI GCAGC 2 cut(s) 123, 434
BccI CCATC 3 cut(s) 76, 638, 763
BciT130I CCWGG 1 cut(s) 736
BcoDI GTCTC 1 cut(s) 64
BfmI CTRYAG 1 cut(s) 684
BfuAI ACCTGC 1 cut(s) 316
BglII AGATCT 1 cut(s) 572
BisI GCNGC 5 cut(s) 112, 142, 154, 423, 637
BlsI GCNGC 5 cut(s) 113, 143, 155, 424, 638
Bme1390I CCNGG 1 cut(s) 736
Bme18I GGWCC 3 cut(s) 181, 317, 732
BmgT120I GGNCC 3 cut(s) 181, 317, 732
BmiI GGNNCC 1 cut(s) 733
BmrFI CCNGG 1 cut(s) 736
BplI GAGNNNNNCTC 2 cut(s) 47, 79
BpmI CTGGAG 1 cut(s) 462
BsaHI GRCGYC 1 cut(s) 48
BsaI GGTCTC 1 cut(s) 64
BsaJI CCNNGG 2 cut(s) 177, 711
BsaWI WCCGGW 1 cut(s) 656
Bsc4I CCNNNNNNNGG 3 cut(s) 140, 190, 795
Bse1I ACTGG 1 cut(s) 249
Bse3DI GCAATG 2 cut(s) 27, 711
BseBI CCWGG 1 cut(s) 736
BseDI CCNNGG 2 cut(s) 177, 711
BseGI GGATG 1 cut(s) 262
BseLI CCNNNNNNNGG 3 cut(s) 140, 190, 795
BseMI GCAATG 2 cut(s) 27, 711
BseMII CTCAG 2 cut(s) 303, 522
BseNI ACTGG 1 cut(s) 249
BseRI GAGGAG 1 cut(s) 465
BseXI GCAGC 2 cut(s) 123, 434
BsgI GTGCAG 1 cut(s) 193
BshFI GGCC 1 cut(s) 299
BsiSI CCGG 1 cut(s) 657
BslI CCNNNNNNNGG 3 cut(s) 140, 190, 795
BsmAI GTCTC 1 cut(s) 64
BsnI GGCC 1 cut(s) 299
Bso31I GGTCTC 1 cut(s) 64
Bsp143I GATC 4 cut(s) 8, 349, 572, 791
BspACI CCGC 5 cut(s) 33, 141, 153, 499, 637
BspANI GGCC 1 cut(s) 299
BspCNI CTCAG 2 cut(s) 302, 523
BspLI GGNNCC 1 cut(s) 733
BspMAI CTGCAG 1 cut(s) 688
BspMI ACCTGC 1 cut(s) 316
BspPI GGATC 1 cut(s) 16
BspQI GCTCTTC 1 cut(s) 345
BspTNI GGTCTC 1 cut(s) 64
BsrDI GCAATG 2 cut(s) 27, 711
BsrI ACTGG 1 cut(s) 249
BssECI CCNNGG 2 cut(s) 177, 711
BssMI GATC 4 cut(s) 8, 349, 572, 791
BssNI GRCGYC 1 cut(s) 48
BssT1I CCWWGG 1 cut(s) 711
Bst2UI CCWGG 1 cut(s) 736
Bst6I CTCTTC 2 cut(s) 345, 684
BstACI GRCGYC 1 cut(s) 48
BstC8I GCNNGC 1 cut(s) 634
BstDEI CTNAG 3 cut(s) 188, 289, 531
BstDSI CCRYGG 1 cut(s) 177
BstF5I GGATG 1 cut(s) 262
BstKTI GATC 4 cut(s) 11, 352, 575, 794
BstMAI GTCTC 1 cut(s) 64
BstMBI GATC 4 cut(s) 8, 349, 572, 791
BstMWI GCNNNNNNNGC 5 cut(s) 150, 422, 692, 701, 779
BstNI CCWGG 1 cut(s) 736
BstNSI RCATGY 1 cut(s) 393
BstSCI CCNGG 1 cut(s) 734
BstSFI CTRYAG 1 cut(s) 684
BstV1I GCAGC 2 cut(s) 123, 434
BstX2I RGATCY 1 cut(s) 572
BstXI CCANNNNNNTGG 1 cut(s) 742
BstYI RGATCY 1 cut(s) 572
BsuRI GGCC 1 cut(s) 299
BtgI CCRYGG 1 cut(s) 177
BtsCI GGATG 1 cut(s) 262
BtsI GCAGTG 1 cut(s) 121
BtsIMutI CAGTG 2 cut(s) 121, 528
BveI ACCTGC 1 cut(s) 316
Cac8I GCNNGC 1 cut(s) 634
Cfr13I GGNCC 3 cut(s) 181, 317, 732
CseI GACGC 1 cut(s) 291
Csp6I GTAC 2 cut(s) 4, 623
CspCI CAANNNNNGTGG 2 cut(s) 259, 294
CviAII CATG 2 cut(s) 361, 390
CviQI GTAC 2 cut(s) 4, 623
DdeI CTNAG 3 cut(s) 188, 289, 531
DpnI GATC 4 cut(s) 10, 351, 574, 793
DpnII GATC 4 cut(s) 8, 349, 572, 791
Eam1104I CTCTTC 2 cut(s) 345, 684
EarI CTCTTC 2 cut(s) 345, 684
Eco130I CCWWGG 1 cut(s) 711
Eco147I AGGCCT 1 cut(s) 299
Eco31I GGTCTC 1 cut(s) 64
Eco47I GGWCC 3 cut(s) 181, 317, 732
EcoRII CCWGG 1 cut(s) 734
EcoT14I CCWWGG 1 cut(s) 711
ErhI CCWWGG 1 cut(s) 711
FaeI CATG 2 cut(s) 364, 393
FatI CATG 2 cut(s) 360, 389
FauI CCCGC 1 cut(s) 26
FauNDI CATATG 1 cut(s) 667
FblI GTMKAC 2 cut(s) 51, 553
Fnu4HI GCNGC 5 cut(s) 112, 142, 154, 423, 637
FokI GGATG 1 cut(s) 269
Fsp4HI GCNGC 5 cut(s) 112, 142, 154, 423, 637
GluI GCNGC 5 cut(s) 112, 142, 154, 423, 637
GsuI CTGGAG 1 cut(s) 462
HaeIII GGCC 1 cut(s) 299
HapII CCGG 1 cut(s) 657
HgaI GACGC 1 cut(s) 291
Hin1I GRCGYC 1 cut(s) 48
Hin1II CATG 2 cut(s) 364, 393
HincII GTYRAC 1 cut(s) 271
HindII GTYRAC 1 cut(s) 271
HinfI GANTC 2 cut(s) 86, 785
HpaII CCGG 1 cut(s) 657
Hpy166II GTNNAC 4 cut(s) 52, 271, 281, 554
Hpy188I TCNGA 1 cut(s) 46
Hpy188III TCNNGA 3 cut(s) 12, 291, 789
Hpy8I GTNNAC 4 cut(s) 52, 271, 281, 554
Hpy99I CGWCG 1 cut(s) 780
HpyAV CCTTC 1 cut(s) 434
HpyCH4IV ACGT 1 cut(s) 48
HpyCH4V TGCA 6 cut(s) 119, 210, 325, 393, 422, 686
HpyF10VI GCNNNNNNNGC 5 cut(s) 150, 422, 692, 701, 779
HpyF3I CTNAG 3 cut(s) 188, 289, 531
HpySE526I ACGT 1 cut(s) 48
Hsp92I GRCGYC 1 cut(s) 48
Hsp92II CATG 2 cut(s) 364, 393
Kzo9I GATC 4 cut(s) 8, 349, 572, 791
LguI GCTCTTC 1 cut(s) 345
LmnI GCTCC 1 cut(s) 745
Lsp1109I GCAGC 2 cut(s) 123, 434
MaeII ACGT 1 cut(s) 48
MalI GATC 4 cut(s) 10, 351, 574, 793
MboI GATC 4 cut(s) 8, 349, 572, 791
MboII GAAGA 4 cut(s) 217, 332, 626, 701
MflI RGATCY 1 cut(s) 572
MluCI AATT 1 cut(s) 579
MspI CCGG 1 cut(s) 657
MspR9I CCNGG 1 cut(s) 736
MvaI CCWGG 1 cut(s) 736
MwoI GCNNNNNNNGC 5 cut(s) 150, 422, 692, 701, 779
NdeI CATATG 1 cut(s) 667
NdeII GATC 4 cut(s) 8, 349, 572, 791
NlaIII CATG 2 cut(s) 364, 393
NlaIV GGNNCC 1 cut(s) 733
NspI RCATGY 1 cut(s) 393
PceI AGGCCT 1 cut(s) 299
PciSI GCTCTTC 1 cut(s) 345
PfeI GAWTC 2 cut(s) 86, 785
PkrI GCNGC 5 cut(s) 113, 143, 155, 424, 638
Psp6I CCWGG 1 cut(s) 734
PspGI CCWGG 1 cut(s) 734
PspN4I GGNNCC 1 cut(s) 733
PspPI GGNCC 3 cut(s) 181, 317, 732
PstI CTGCAG 1 cut(s) 688
PsuI RGATCY 1 cut(s) 572
RsaI GTAC 2 cut(s) 5, 624
RsaNI GTAC 2 cut(s) 4, 623
SapI GCTCTTC 1 cut(s) 345
SatI GCNGC 5 cut(s) 112, 142, 154, 423, 637
Sau3AI GATC 4 cut(s) 8, 349, 572, 791
Sau96I GGNCC 3 cut(s) 181, 317, 732
ScrFI CCNGG 1 cut(s) 736
SfcI CTRYAG 1 cut(s) 684
SinI GGWCC 3 cut(s) 181, 317, 732
Sse9I AATT 1 cut(s) 579
SseBI AGGCCT 1 cut(s) 299
SsiI CCGC 5 cut(s) 33, 141, 153, 499, 637
StuI AGGCCT 1 cut(s) 299
StyD4I CCNGG 1 cut(s) 734
StyI CCWWGG 1 cut(s) 711
TaiI ACGT 1 cut(s) 51
TaqI TCGA 1 cut(s) 775
TasI AATT 1 cut(s) 579
TatI WGTACW 1 cut(s) 622
TauI GCSGC 3 cut(s) 144, 156, 639
TfiI GAWTC 2 cut(s) 86, 785
TscAI CASTG 2 cut(s) 121, 535
TseI GCWGC 2 cut(s) 111, 422
TspDTI ATGAA 2 cut(s) 453, 783
TspGWI ACGGA 2 cut(s) 21, 173
TspRI CASTG 2 cut(s) 121, 535
VpaK11BI GGWCC 3 cut(s) 181, 317, 732
XceI RCATGY 1 cut(s) 393
XmiI GTMKAC 2 cut(s) 51, 553
ZraI GACGTC 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.