pycom15g20670

Heterogeneous nuclear ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0016692
Physical Location & Seq
Forward (+)
14822146 .. 14823649
1504 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g20670.1

Sequence Viewer

Length: 792 bp
ATGTACGGATCGAGAGGGGCAATGTTGGGAAGCGGGGGGGTTTCGGACGGGTACGAGGTCGGCTCAAAGAGACCAAGAATGATGGATCCCTACTTCGCAGTGAGCAGCGGCGCAAGTGGCTTTCAACCTTATGGCTATGGTGGGAATTTTCAGCCCCCGGTTTTTCCTGTGGCCCGTCTCAGGGGACTTCCGTTCAACTGCACAGATATTGACATCTTCAAGTTCTTTGCTGGATTGGATATTGTTGATGTGTTGCTGGTCAACAAGGGTGGACGGTTTTCAGGCGAGGCCTTTGTTGTTTTTGCTGGACCCATGCAGGTTGAGCTTGCTTTACAGAGAGATCGGCAGAACATGGGCCGTCGGTACGTCGAAGTGTTCAGGTGCAAGAGGCAGGAGTACTACAAGGCTGTTGCAGCAGAGGTAAACTATGAAGGAATTTATGATAATGACTATCAAGCAGCAAGCCCTCCACCATCTAAATCAAAGAGGGTCAGCGACAAGGAGAAAATGGAGTACACTGAAATATTGAAGATGCGTGGCCTCCCCTTCTCAGCAAAAAGATCTGAAATTGTGGAGTTTTTTGGAGAATTCAAGGTTGTAGAAGATAGGGTGCATATTGCTTGCCGCCCAGACGGAAAAGCTACCGGGGAGGCATATGTGGAGTTTGTTTCTGCAGACGAGGCAAAGAAGGCAATGTGCAAGGACAAGATGACCATTGGGTCGAGGTACGTGGAGCTGTTTCCATCGACACCAGATGAAGCTAGACGGGCGGAATCCAGATCAAGACAGTGA

Protein Analysis

264

Amino Acids

29.48

Weight (kDa)

8.74

Isoelectric Point (pI)

48.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 178 - 243 1.4e-07 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016692)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66010 AT5G66010
fragaria_vesca FvH4_1g10440
malus_domestica MD02G1117600.v1.1 MD15G1232300.v1.1
prunus_persica Prupe.7G181800_v2.0.a1
pyrus_communis pycom15g20670
rosa_chinensis RchiOBHm_Chr2g0097301
rosa_laevigata RLG00000016715
rosa_roxburghii Rroxscaffold_2G00144800
rosa_samantha Rh2AG112300 Rh2BG115000 Rh2CG117100
rosa_wichuraiana Rw2G008780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 718
Acc36I ACCTGC 1 cut(s) 307
AciI CCGC 4 cut(s) 33, 108, 625, 770
AclWI GGATC 3 cut(s) 16, 80, 93
AcsI RAATTY 3 cut(s) 145, 435, 587
AfaI GTAC 6 cut(s) 5, 53, 365, 398, 515, 728
AfiI CCNNNNNNNGG 2 cut(s) 180, 181
AgsI TTSAA 5 cut(s) 125, 196, 220, 529, 592
AluBI AGCT 4 cut(s) 325, 641, 736, 761
AluI AGCT 4 cut(s) 325, 641, 736, 761
Alw26I GTCTC 2 cut(s) 64, 182
AlwI GGATC 3 cut(s) 16, 80, 93
AoxI GGCC 4 cut(s) 171, 288, 355, 538
ApeKI GCWGC 3 cut(s) 105, 413, 458
ApoI RAATTY 3 cut(s) 145, 435, 587
AspLEI GCGC 1 cut(s) 113
AspS9I GGNCC 3 cut(s) 172, 308, 355
AsuC2I CCSGG 2 cut(s) 158, 646
AvaII GGWCC 1 cut(s) 308
BamHI GGATCC 1 cut(s) 85
BbvI GCAGC 3 cut(s) 117, 425, 470
BccI CCATC 3 cut(s) 76, 481, 751
BceAI ACGGC 1 cut(s) 342
BcnI CCSGG 2 cut(s) 158, 646
BcoDI GTCTC 2 cut(s) 64, 182
BfaI CTAG 1 cut(s) 762
BfmI CTRYAG 1 cut(s) 672
BfuAI ACCTGC 1 cut(s) 307
BglII AGATCT 1 cut(s) 560
BisI GCNGC 5 cut(s) 106, 109, 414, 459, 625
BlsI GCNGC 5 cut(s) 107, 110, 415, 460, 626
BmcAI AGTACT 1 cut(s) 398
Bme1390I CCNGG 2 cut(s) 158, 646
Bme18I GGWCC 1 cut(s) 308
BmgT120I GGNCC 3 cut(s) 172, 308, 355
BmiI GGNNCC 2 cut(s) 87, 310
BmrFI CCNGG 2 cut(s) 158, 646
BmsI GCATC 1 cut(s) 522
BplI GAGNNNNNCTC 2 cut(s) 47, 79
BpuMI CCSGG 2 cut(s) 158, 646
BsaAI YACGTR 1 cut(s) 730
BsaI GGTCTC 1 cut(s) 64
BsaJI CCNNGG 2 cut(s) 156, 645
Bsc4I CCNNNNNNNGG 2 cut(s) 180, 181
Bse3DI GCAATG 2 cut(s) 27, 699
BseDI CCNNGG 2 cut(s) 156, 645
BseLI CCNNNNNNNGG 2 cut(s) 180, 181
BseMI GCAATG 2 cut(s) 27, 699
BseMII CTCAG 2 cut(s) 193, 564
BseXI GCAGC 3 cut(s) 117, 425, 470
BsgI GTGCAG 1 cut(s) 184
BshFI GGCC 4 cut(s) 173, 290, 357, 540
BsiSI CCGG 2 cut(s) 158, 645
BslFI GGGAC 1 cut(s) 198
BslI CCNNNNNNNGG 2 cut(s) 180, 181
BsmAI GTCTC 2 cut(s) 64, 182
BsmBI CGTCTC 1 cut(s) 182
BsmFI GGGAC 1 cut(s) 198
BsnI GGCC 4 cut(s) 173, 290, 357, 540
Bso31I GGTCTC 1 cut(s) 64
Bsp143I GATC 5 cut(s) 8, 85, 340, 560, 779
BspACI CCGC 4 cut(s) 33, 108, 625, 770
BspANI GGCC 4 cut(s) 173, 290, 357, 540
BspCNI CTCAG 2 cut(s) 192, 563
BspLI GGNNCC 2 cut(s) 87, 310
BspMAI CTGCAG 1 cut(s) 676
BspMI ACCTGC 1 cut(s) 307
BspPI GGATC 3 cut(s) 16, 80, 93
BspTNI GGTCTC 1 cut(s) 64
BsrDI GCAATG 2 cut(s) 27, 699
BssECI CCNNGG 2 cut(s) 156, 645
BssMI GATC 5 cut(s) 8, 85, 340, 560, 779
Bst4CI ACNGT 2 cut(s) 276, 789
BstBAI YACGTR 1 cut(s) 730
BstC8I GCNNGC 3 cut(s) 327, 463, 622
BstDEI CTNAG 2 cut(s) 179, 550
BstHHI GCGC 1 cut(s) 113
BstKTI GATC 5 cut(s) 11, 88, 343, 563, 782
BstMAI GTCTC 2 cut(s) 64, 182
BstMBI GATC 5 cut(s) 8, 85, 340, 560, 779
BstMWI GCNNNNNNNGC 6 cut(s) 117, 322, 413, 680, 689, 767
BstSCI CCNGG 2 cut(s) 156, 644
BstSFI CTRYAG 1 cut(s) 672
BstV1I GCAGC 3 cut(s) 117, 425, 470
BstX2I RGATCY 2 cut(s) 85, 560
BstYI RGATCY 2 cut(s) 85, 560
BsuRI GGCC 4 cut(s) 173, 290, 357, 540
BtsI GCAGTG 1 cut(s) 105
BtsIMutI CAGTG 2 cut(s) 105, 516
BveI ACCTGC 1 cut(s) 307
Cac8I GCNNGC 3 cut(s) 327, 463, 622
CfoI GCGC 1 cut(s) 113
Cfr13I GGNCC 3 cut(s) 172, 308, 355
Csp6I GTAC 6 cut(s) 4, 52, 364, 397, 514, 727
CspCI CAANNNNNGTGG 2 cut(s) 250, 285
CviAII CATG 2 cut(s) 313, 352
CviQI GTAC 6 cut(s) 4, 52, 364, 397, 514, 727
DdeI CTNAG 2 cut(s) 179, 550
DpnI GATC 5 cut(s) 10, 87, 342, 562, 781
DpnII GATC 5 cut(s) 8, 85, 340, 560, 779
DrdI GACNNNNNNGTC 1 cut(s) 718
DseDI GACNNNNNNGTC 1 cut(s) 718
EciI GGCGGA 1 cut(s) 785
Eco147I AGGCCT 1 cut(s) 290
Eco31I GGTCTC 1 cut(s) 64
Eco47I GGWCC 1 cut(s) 308
EcoRI GAATTC 1 cut(s) 587
Esp3I CGTCTC 1 cut(s) 182
FaeI CATG 2 cut(s) 316, 355
FaiI YATR 9 cut(s) 132, 138, 314, 353, 429, 441, 615, 655, 657
FaqI GGGAC 1 cut(s) 198
FatI CATG 2 cut(s) 312, 351
FauI CCCGC 1 cut(s) 26
FauNDI CATATG 1 cut(s) 655
Fnu4HI GCNGC 5 cut(s) 106, 109, 414, 459, 625
Fsp4HI GCNGC 5 cut(s) 106, 109, 414, 459, 625
FspBI CTAG 1 cut(s) 762
GlaI GCGC 1 cut(s) 112
GluI GCNGC 5 cut(s) 106, 109, 414, 459, 625
HaeIII GGCC 4 cut(s) 173, 290, 357, 540
HapII CCGG 2 cut(s) 158, 645
HhaI GCGC 1 cut(s) 113
Hin1II CATG 2 cut(s) 316, 355
Hin6I GCGC 1 cut(s) 111
HinP1I GCGC 1 cut(s) 111
HincII GTYRAC 1 cut(s) 262
HindII GTYRAC 1 cut(s) 262
HinfI GANTC 1 cut(s) 773
HpaII CCGG 2 cut(s) 158, 645
Hpy166II GTNNAC 4 cut(s) 262, 272, 424, 516
Hpy188I TCNGA 2 cut(s) 46, 565
Hpy188III TCNNGA 3 cut(s) 12, 777, 783
Hpy8I GTNNAC 4 cut(s) 262, 272, 424, 516
Hpy99I CGWCG 2 cut(s) 363, 371
HpyAV CCTTC 3 cut(s) 425, 556, 682
HpyCH4III ACNGT 2 cut(s) 276, 789
HpyCH4IV ACGT 2 cut(s) 366, 729
HpyCH4V TGCA 7 cut(s) 201, 316, 384, 413, 613, 674, 699
HpyF10VI GCNNNNNNNGC 6 cut(s) 117, 322, 413, 680, 689, 767
HpyF3I CTNAG 2 cut(s) 179, 550
HpySE526I ACGT 2 cut(s) 366, 729
Hsp92II CATG 2 cut(s) 316, 355
HspAI GCGC 1 cut(s) 111
Kzo9I GATC 5 cut(s) 8, 85, 340, 560, 779
LmnI GCTCC 1 cut(s) 733
Lsp1109I GCAGC 3 cut(s) 117, 425, 470
LweI GCATC 1 cut(s) 522
MaeI CTAG 1 cut(s) 762
MaeII ACGT 2 cut(s) 366, 729
MalI GATC 5 cut(s) 10, 87, 342, 562, 781
MboI GATC 5 cut(s) 8, 85, 340, 560, 779
MboII GAAGA 3 cut(s) 208, 541, 614
MflI RGATCY 2 cut(s) 85, 560
MluCI AATT 4 cut(s) 145, 435, 567, 587
MspA1I CMGCKG 1 cut(s) 108
MspI CCGG 2 cut(s) 158, 645
MspR9I CCNGG 2 cut(s) 158, 646
MwoI GCNNNNNNNGC 6 cut(s) 117, 322, 413, 680, 689, 767
NciI CCSGG 2 cut(s) 158, 646
NdeI CATATG 1 cut(s) 655
NdeII GATC 5 cut(s) 8, 85, 340, 560, 779
NlaIII CATG 2 cut(s) 316, 355
NlaIV GGNNCC 2 cut(s) 87, 310
PceI AGGCCT 1 cut(s) 290
PfeI GAWTC 1 cut(s) 773
PkrI GCNGC 5 cut(s) 107, 110, 415, 460, 626
Ppu21I YACGTR 1 cut(s) 730
PspN4I GGNNCC 2 cut(s) 87, 310
PspPI GGNCC 3 cut(s) 172, 308, 355
PstI CTGCAG 1 cut(s) 676
PsuI RGATCY 2 cut(s) 85, 560
RsaI GTAC 6 cut(s) 5, 53, 365, 398, 515, 728
RsaNI GTAC 6 cut(s) 4, 52, 364, 397, 514, 727
SatI GCNGC 5 cut(s) 106, 109, 414, 459, 625
Sau3AI GATC 5 cut(s) 8, 85, 340, 560, 779
Sau96I GGNCC 3 cut(s) 172, 308, 355
ScaI AGTACT 1 cut(s) 398
ScrFI CCNGG 2 cut(s) 158, 646
SfaNI GCATC 1 cut(s) 522
SfcI CTRYAG 1 cut(s) 672
SinI GGWCC 1 cut(s) 308
Sse9I AATT 4 cut(s) 145, 435, 567, 587
SseBI AGGCCT 1 cut(s) 290
SsiI CCGC 4 cut(s) 33, 108, 625, 770
SspI AATATT 1 cut(s) 525
SspMI CTAG 1 cut(s) 762
StuI AGGCCT 1 cut(s) 290
StyD4I CCNGG 2 cut(s) 156, 644
TaaI ACNGT 2 cut(s) 276, 789
TaiI ACGT 2 cut(s) 369, 732
TaqI TCGA 4 cut(s) 11, 369, 722, 746
TasI AATT 4 cut(s) 145, 435, 567, 587
TatI WGTACW 2 cut(s) 396, 513
TauI GCSGC 2 cut(s) 111, 627
TfiI GAWTC 1 cut(s) 773
TscAI CASTG 2 cut(s) 105, 523
TseI GCWGC 3 cut(s) 105, 413, 458
TspDTI ATGAA 2 cut(s) 444, 771
TspGWI ACGGA 3 cut(s) 21, 180, 648
TspRI CASTG 2 cut(s) 105, 523
VpaK11BI GGWCC 1 cut(s) 308
XapI RAATTY 3 cut(s) 145, 435, 587
XspI CTAG 1 cut(s) 762
ZrmI AGTACT 1 cut(s) 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.