MD15G1232300.v1.1

Heterogeneous nuclear ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0016692
Physical Location & Seq
Forward (+)
18991290 .. 18993212
1923 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1232300.v1.1.491

Sequence Viewer

Length: 984 bp
ATGGACCCAATTAGGGAGCTAGTCAATGGAGACTCATATATAAATCAAAGCTCGATAATCTCCTACTCGTCCTTTCGAACGATCGCAATTAGGGTTTTCTGGATAATACTCAAATCCCCAAATTTCAGTCTTTCCTTCTCCTTTAGAGACTCGAAGCTGCCTTGGAATTCAAATCGCTGCAAGCCTGCAACCATGTACGGATCGAGAGGGGCAATGTTGGGAAGCGGGGGGGTTTCGGACGGGTACGAGGTCGGCTCAAAGAGACCAAGAATGATGGATCCCTACTTCGCAGTGAGCAGCGGCGCAAGTGGCTTTCAACCTTATGGCTATGGTGGGAATTTTCAGCCCCCGGTTTTTCCTGTGGCCCGTCTCAGGGGACTTCCATTCAACTGCACAGATATTGACATCTTCAAGTTCTTTGCTGGATTGGATATTGTTGATGTGTTGCTGGTCAACAAGGGTGGACGGTTTTCAGGTGAGGCCTTTGTTGTTTTTGCTGGGCCCATGCAGGTTGAGCTTGCTTTACAGAGAGATCGGCAGAACATGGGCCGTAGGTACGTCGAAGTATTCAGGTGCAAGAGGCAGGAGTACTACAAGGCCGTTGCAGCGGAGGTAAACTATGAAGGAATTTATGATAATGACTATCAAGCAGCAAGCCCTCCACCATCCAAATCAAAGAGGTTCAGCGACAAGGAGAAAATGGAGTACACCGAAATATTGAAGATGCGTGGCCTCCCCTTCTCAGCAAAAAAATCTGAAATTCTGGAGTTTTTTGAAGAATTCAAGGTTGTGGAAGATAGGGTGCATATTGCTTGCCGCCCAGACGGAAAAGCCACCGGAGAGGCATATGTGGAGTTTGTTTCTGCAGACGAGGCAAAGAAGGCAATGTGCAAGGACAAGATGACTATTGGGTCGAGGTACGTGGAGCTGTTTCCATCGACACCAGATGAAGCTAGACGGGCGGAATCCAGATCAAGACAGTGA

Protein Analysis

328

Amino Acids

36.99

Weight (kDa)

9.01

Isoelectric Point (pI)

45.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 242 - 307 1.2e-07 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016692)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66010 AT5G66010
fragaria_vesca FvH4_1g10440
malus_domestica MD02G1117600.v1.1 MD15G1232300.v1.1
prunus_persica Prupe.7G181800_v2.0.a1
pyrus_communis pycom15g20670
rosa_chinensis RchiOBHm_Chr2g0097301
rosa_laevigata RLG00000016715
rosa_roxburghii Rroxscaffold_2G00144800
rosa_samantha Rh2AG112300 Rh2BG115000 Rh2CG117100
rosa_wichuraiana Rw2G008780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 910
Acc36I ACCTGC 1 cut(s) 499
AciI CCGC 5 cut(s) 225, 300, 608, 817, 962
AclWI GGATC 3 cut(s) 208, 272, 285
AcsI RAATTY 6 cut(s) 121, 166, 337, 627, 759, 779
AfaI GTAC 6 cut(s) 197, 245, 557, 590, 707, 920
AfiI CCNNNNNNNGG 3 cut(s) 13, 372, 373
AgsI TTSAA 7 cut(s) 171, 317, 388, 412, 721, 776, 784
AluBI AGCT 6 cut(s) 19, 51, 157, 517, 928, 953
AluI AGCT 6 cut(s) 19, 51, 157, 517, 928, 953
Alw26I GTCTC 4 cut(s) 24, 141, 256, 374
AlwI GGATC 3 cut(s) 208, 272, 285
AoxI GGCC 6 cut(s) 363, 480, 500, 547, 597, 730
ApaI GGGCCC 1 cut(s) 504
ApeKI GCWGC 5 cut(s) 157, 177, 297, 605, 650
ApoI RAATTY 6 cut(s) 121, 166, 337, 627, 759, 779
AspLEI GCGC 1 cut(s) 305
AspS9I GGNCC 5 cut(s) 4, 364, 500, 501, 547
AsuC2I CCSGG 1 cut(s) 350
AsuHPI GGTGA 1 cut(s) 488
AsuII TTCGAA 1 cut(s) 76
AvaII GGWCC 1 cut(s) 4
BaeGI GKGCMC 1 cut(s) 504
BamHI GGATCC 1 cut(s) 277
BanII GRGCYC 1 cut(s) 504
BbvI GCAGC 5 cut(s) 144, 164, 309, 617, 662
BccI CCATC 3 cut(s) 268, 673, 943
BceAI ACGGC 2 cut(s) 534, 584
BcnI CCSGG 1 cut(s) 350
BcoDI GTCTC 4 cut(s) 24, 141, 256, 374
BfaI CTAG 2 cut(s) 20, 954
BfmI CTRYAG 1 cut(s) 864
BfuAI ACCTGC 1 cut(s) 499
BisI GCNGC 7 cut(s) 158, 178, 298, 301, 606, 651, 817
BlsI GCNGC 7 cut(s) 159, 179, 299, 302, 607, 652, 818
BmcAI AGTACT 1 cut(s) 590
Bme1390I CCNGG 1 cut(s) 350
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 5 cut(s) 4, 364, 500, 501, 547
BmiI GGNNCC 3 cut(s) 6, 279, 502
BmrFI CCNGG 1 cut(s) 350
BmsI GCATC 1 cut(s) 714
BplI GAGNNNNNCTC 2 cut(s) 239, 271
BpmI CTGGAG 1 cut(s) 785
Bpu14I TTCGAA 1 cut(s) 76
BpuMI CCSGG 1 cut(s) 350
BsaAI YACGTR 1 cut(s) 922
BsaI GGTCTC 1 cut(s) 256
BsaJI CCNNGG 2 cut(s) 161, 348
BsaWI WCCGGW 1 cut(s) 836
Bsc4I CCNNNNNNNGG 3 cut(s) 13, 372, 373
Bse3DI GCAATG 2 cut(s) 219, 891
BseDI CCNNGG 2 cut(s) 161, 348
BseGI GGATG 1 cut(s) 665
BseLI CCNNNNNNNGG 3 cut(s) 13, 372, 373
BseMI GCAATG 2 cut(s) 219, 891
BseMII CTCAG 2 cut(s) 385, 756
BseSI GKGCMC 1 cut(s) 504
BseXI GCAGC 5 cut(s) 144, 164, 309, 617, 662
BseYI CCCAGC 1 cut(s) 497
BsgI GTGCAG 1 cut(s) 376
Bsh1285I CGRYCG 1 cut(s) 84
BshFI GGCC 6 cut(s) 365, 482, 502, 549, 599, 732
BsiEI CGRYCG 1 cut(s) 84
BsiSI CCGG 2 cut(s) 350, 837
BslFI GGGAC 1 cut(s) 390
BslI CCNNNNNNNGG 3 cut(s) 13, 372, 373
BsmAI GTCTC 4 cut(s) 24, 141, 256, 374
BsmBI CGTCTC 1 cut(s) 374
BsmFI GGGAC 1 cut(s) 390
BsnI GGCC 6 cut(s) 365, 482, 502, 549, 599, 732
Bso31I GGTCTC 1 cut(s) 256
Bsp119I TTCGAA 1 cut(s) 76
Bsp120I GGGCCC 1 cut(s) 500
Bsp1286I GDGCHC 1 cut(s) 504
Bsp143I GATC 5 cut(s) 81, 200, 277, 532, 971
BspACI CCGC 5 cut(s) 225, 300, 608, 817, 962
BspANI GGCC 6 cut(s) 365, 482, 502, 549, 599, 732
BspCNI CTCAG 2 cut(s) 384, 755
BspLI GGNNCC 3 cut(s) 6, 279, 502
BspMAI CTGCAG 1 cut(s) 868
BspMI ACCTGC 1 cut(s) 499
BspPI GGATC 3 cut(s) 208, 272, 285
BspT104I TTCGAA 1 cut(s) 76
BspTNI GGTCTC 1 cut(s) 256
BsrDI GCAATG 2 cut(s) 219, 891
BssECI CCNNGG 2 cut(s) 161, 348
BssMI GATC 5 cut(s) 81, 200, 277, 532, 971
BssT1I CCWWGG 1 cut(s) 161
Bst4CI ACNGT 2 cut(s) 468, 981
BstBAI YACGTR 1 cut(s) 922
BstBI TTCGAA 1 cut(s) 76
BstC8I GCNNGC 5 cut(s) 182, 186, 519, 655, 814
BstDEI CTNAG 2 cut(s) 371, 742
BstF5I GGATG 1 cut(s) 665
BstHHI GCGC 1 cut(s) 305
BstKTI GATC 5 cut(s) 84, 203, 280, 535, 974
BstMAI GTCTC 4 cut(s) 24, 141, 256, 374
BstMBI GATC 5 cut(s) 81, 200, 277, 532, 971
BstMCI CGRYCG 1 cut(s) 84
BstMWI GCNNNNNNNGC 6 cut(s) 309, 514, 605, 872, 881, 959
BstSCI CCNGG 1 cut(s) 348
BstSFI CTRYAG 1 cut(s) 864
BstSLI GKGCMC 1 cut(s) 504
BstV1I GCAGC 5 cut(s) 144, 164, 309, 617, 662
BstX2I RGATCY 1 cut(s) 277
BstYI RGATCY 1 cut(s) 277
BsuRI GGCC 6 cut(s) 365, 482, 502, 549, 599, 732
BtsCI GGATG 1 cut(s) 665
BtsI GCAGTG 1 cut(s) 297
BtsIMutI CAGTG 1 cut(s) 297
BveI ACCTGC 1 cut(s) 499
Cac8I GCNNGC 5 cut(s) 182, 186, 519, 655, 814
CfoI GCGC 1 cut(s) 305
Cfr13I GGNCC 5 cut(s) 4, 364, 500, 501, 547
Csp6I GTAC 6 cut(s) 196, 244, 556, 589, 706, 919
CspCI CAANNNNNGTGG 2 cut(s) 442, 477
CviAII CATG 3 cut(s) 193, 505, 544
CviQI GTAC 6 cut(s) 196, 244, 556, 589, 706, 919
DdeI CTNAG 2 cut(s) 371, 742
DpnI GATC 5 cut(s) 83, 202, 279, 534, 973
DpnII GATC 5 cut(s) 81, 200, 277, 532, 971
DrdI GACNNNNNNGTC 1 cut(s) 910
DseDI GACNNNNNNGTC 1 cut(s) 910
EciI GGCGGA 1 cut(s) 977
Eco130I CCWWGG 1 cut(s) 161
Eco147I AGGCCT 1 cut(s) 482
Eco24I GRGCYC 1 cut(s) 504
Eco31I GGTCTC 1 cut(s) 256
Eco47I GGWCC 1 cut(s) 4
EcoRI GAATTC 2 cut(s) 166, 779
EcoT14I CCWWGG 1 cut(s) 161
EcoT38I GRGCYC 1 cut(s) 504
ErhI CCWWGG 1 cut(s) 161
Esp3I CGTCTC 1 cut(s) 374
FaeI CATG 3 cut(s) 196, 508, 547
FaqI GGGAC 1 cut(s) 390
FatI CATG 3 cut(s) 192, 504, 543
FauI CCCGC 1 cut(s) 218
FauNDI CATATG 1 cut(s) 847
Fnu4HI GCNGC 7 cut(s) 158, 178, 298, 301, 606, 651, 817
FokI GGATG 1 cut(s) 652
FriOI GRGCYC 1 cut(s) 504
Fsp4HI GCNGC 7 cut(s) 158, 178, 298, 301, 606, 651, 817
FspBI CTAG 2 cut(s) 20, 954
GlaI GCGC 1 cut(s) 304
GluI GCNGC 7 cut(s) 158, 178, 298, 301, 606, 651, 817
GsaI CCCAGC 1 cut(s) 501
GsuI CTGGAG 1 cut(s) 785
HaeIII GGCC 6 cut(s) 365, 482, 502, 549, 599, 732
HapII CCGG 2 cut(s) 350, 837
HhaI GCGC 1 cut(s) 305
Hin1II CATG 3 cut(s) 196, 508, 547
Hin6I GCGC 1 cut(s) 303
HinP1I GCGC 1 cut(s) 303
HincII GTYRAC 1 cut(s) 454
HindII GTYRAC 1 cut(s) 454
HinfI GANTC 3 cut(s) 32, 149, 965
HpaII CCGG 2 cut(s) 350, 837
HphI GGTGA 1 cut(s) 488
Hpy166II GTNNAC 4 cut(s) 454, 464, 616, 708
Hpy188I TCNGA 2 cut(s) 238, 757
Hpy188III TCNNGA 5 cut(s) 100, 204, 764, 969, 975
Hpy8I GTNNAC 4 cut(s) 454, 464, 616, 708
Hpy99I CGWCG 1 cut(s) 563
HpyAV CCTTC 4 cut(s) 145, 617, 748, 874
HpyCH4III ACNGT 2 cut(s) 468, 981
HpyCH4IV ACGT 2 cut(s) 558, 921
HpyCH4V TGCA 9 cut(s) 180, 188, 393, 508, 576, 605, 805, 866, 891
HpyF10VI GCNNNNNNNGC 6 cut(s) 309, 514, 605, 872, 881, 959
HpyF3I CTNAG 2 cut(s) 371, 742
HpySE526I ACGT 2 cut(s) 558, 921
Hsp92II CATG 3 cut(s) 196, 508, 547
HspAI GCGC 1 cut(s) 303
Kzo9I GATC 5 cut(s) 81, 200, 277, 532, 971
LmnI GCTCC 2 cut(s) 16, 925
Lsp1109I GCAGC 5 cut(s) 144, 164, 309, 617, 662
LweI GCATC 1 cut(s) 714
MaeI CTAG 2 cut(s) 20, 954
MaeII ACGT 2 cut(s) 558, 921
MalI GATC 5 cut(s) 83, 202, 279, 534, 973
MboI GATC 5 cut(s) 81, 200, 277, 532, 971
MboII GAAGA 4 cut(s) 400, 733, 788, 806
MflI RGATCY 1 cut(s) 277
MhlI GDGCHC 1 cut(s) 504
MluCI AATT 8 cut(s) 9, 87, 121, 166, 337, 627, 759, 779
MlyI GAGTC 2 cut(s) 26, 143
MspA1I CMGCKG 2 cut(s) 300, 608
MspI CCGG 2 cut(s) 350, 837
MspR9I CCNGG 1 cut(s) 350
MwoI GCNNNNNNNGC 6 cut(s) 309, 514, 605, 872, 881, 959
NciI CCSGG 1 cut(s) 350
NdeI CATATG 1 cut(s) 847
NdeII GATC 5 cut(s) 81, 200, 277, 532, 971
NlaIII CATG 3 cut(s) 196, 508, 547
NlaIV GGNNCC 3 cut(s) 6, 279, 502
NspV TTCGAA 1 cut(s) 76
PceI AGGCCT 1 cut(s) 482
PfeI GAWTC 1 cut(s) 965
PkrI GCNGC 7 cut(s) 159, 179, 299, 302, 607, 652, 818
Ple19I CGATCG 1 cut(s) 84
PleI GAGTC 2 cut(s) 26, 143
PpsI GAGTC 2 cut(s) 26, 143
Ppu21I YACGTR 1 cut(s) 922
PspFI CCCAGC 1 cut(s) 497
PspN4I GGNNCC 3 cut(s) 6, 279, 502
PspOMI GGGCCC 1 cut(s) 500
PspPI GGNCC 5 cut(s) 4, 364, 500, 501, 547
PstI CTGCAG 1 cut(s) 868
PsuI RGATCY 1 cut(s) 277
PvuI CGATCG 1 cut(s) 84
RsaI GTAC 6 cut(s) 197, 245, 557, 590, 707, 920
RsaNI GTAC 6 cut(s) 196, 244, 556, 589, 706, 919
SatI GCNGC 7 cut(s) 158, 178, 298, 301, 606, 651, 817
Sau3AI GATC 5 cut(s) 81, 200, 277, 532, 971
Sau96I GGNCC 5 cut(s) 4, 364, 500, 501, 547
ScaI AGTACT 1 cut(s) 590
SchI GAGTC 2 cut(s) 26, 143
ScrFI CCNGG 1 cut(s) 350
SduI GDGCHC 1 cut(s) 504
SfaNI GCATC 1 cut(s) 714
SfcI CTRYAG 1 cut(s) 864
SfuI TTCGAA 1 cut(s) 76
SinI GGWCC 1 cut(s) 4
Sse9I AATT 8 cut(s) 9, 87, 121, 166, 337, 627, 759, 779
SseBI AGGCCT 1 cut(s) 482
SsiI CCGC 5 cut(s) 225, 300, 608, 817, 962
SspI AATATT 1 cut(s) 717
SspMI CTAG 2 cut(s) 20, 954
StuI AGGCCT 1 cut(s) 482
StyD4I CCNGG 1 cut(s) 348
StyI CCWWGG 1 cut(s) 161
TaaI ACNGT 2 cut(s) 468, 981
TaiI ACGT 2 cut(s) 561, 924
TaqI TCGA 7 cut(s) 53, 76, 152, 203, 561, 914, 938
TasI AATT 8 cut(s) 9, 87, 121, 166, 337, 627, 759, 779
TatI WGTACW 2 cut(s) 588, 705
TauI GCSGC 2 cut(s) 303, 819
TfiI GAWTC 1 cut(s) 965
TscAI CASTG 1 cut(s) 297
TseI GCWGC 5 cut(s) 157, 177, 297, 605, 650
TspDTI ATGAA 2 cut(s) 636, 963
TspGWI ACGGA 2 cut(s) 213, 840
TspRI CASTG 1 cut(s) 297
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 6 cut(s) 121, 166, 337, 627, 759, 779
XspI CTAG 2 cut(s) 20, 954
ZrmI AGTACT 1 cut(s) 590
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.