FvH4_1g12320

TRAM domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0014389
Physical Location & Seq
Forward (+)
6744865 .. 6748097
3233 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g12320.t1

Sequence Viewer

Length: 1902 bp
ATGAGAACGAAGGAGAAGCGCGCGCCTCTACTATCTGGCCTCACAGTAATGGCGACCTCACTCTCTTCCCTGTCCTCGATTCTGAACCAACCACGGCATGTCGTTTTGCTCCAGAAGCCATGTCGTTTCGCTCTGAGACTCCTCAGTTGGAAGCCGGCAGAAGCTTCCGGAATCCGATGCTACCACCGGCAGCGGACCAGTACTAGGCTCCAAAGACGGAGTCTTGGCTCCAGAAGCTTCTCGAGCTCCAGCTCTTCTCTTCCGAGCCACTCCGACGGCCCCAGCCTCCGCCACTTCGTCGCTCAGGCCGCCGCAGTCACCGCCTCCAAACCTCAGCCCCAGAATGTGATAGCTCCTCTGCCGATAGGGCGAATCTACCACGAGACGTATGGGTGTCAGATGAATATAAATGACATGGAGATTGTTCTGTCGATTATGAAGGAGGCTGGATATAGTGAAGTTGTGGACGTTCCTGAGAATGCAGAGGTTATTTTCATTAATACATGTGCGATCAGGGACAATGCAGAACAGAAGGTGTGGCAGCGGCTTAATTACTTTTGGTTTCTTAAGAGGCATTGGAAGAGCAATGTTAAGATAGGGAGGTCGCAGTCCACACGCCCTCCGAAAGTTGTGGTTTTGGGATGTATGGCGGAGAGGTTGAAGGACAAGATACTAGATGCAGATAAAATGGTCGATGTGGTCTGTGGACCTGATGCGTACAGGGACTTGCCGCGGCTATTGCAAGATGTGGACTACGGTCAGAAAGGGATTAATACTCTTCTTTCATTGGAAGAGACTTACGCTGATATTAGTCCAGTTCGAATCTCCAAGAATTCAATCAGTGCTTTCGTTTCTGTTATGAGGGGTTGCAACAATATGTGCTCATTTTGTATTGTTCCTTTCACAAGAGGCAGAGAGCGGTCACGTCCTGTGGAATCAATTGTCAGGGAGGTGGGAGAGCTTTGGCAAGAAGGTGTGAAAGAGGTAACACTGCTAGGCCAGAATGTAAATAGCTATAATGATGCCTCTGAGTATGAAAAGGAAGCTGAAGCAGGAACTAGTTGGAACTACAGTGAAGGATTTTCCAGCTTGTGCAAGGTGAAAAAAGTAGGTTCACGTTTTGCTGATCTCTTGGATCGGCTTTCCACAGAGTTTCCAGAGATGAGATTCAGATACACATCCCCCCACCCTAAAGATTTCCCTGATGAGTTGCTCTATATAATGCGAGACAGACACAATATTTGCAACTATATCCATTTGCCAGCTCAAAGTGGTAGTAGCAGAGTTATAGAAAGAATGCGACGGGGCTATACCCGTGAGGCATACTTAGATCTTGTGCAAAAGATACGGAGGATAATTCCAGATGTCGGCATCAGCAGTGATTTCATATGTGGATTTTGTGGGGAGACTGAGGAGGACCATGAAGAGACAATAAGCCTTGTAAAGGCTGTTGGATATGATATGGCTTACATGTTTGCATATAGCATGAGAGAGAAGACCCATGCAAATAGAAACTATGATGATGATGTTCCGGAGAAAGTGAAGCAGAGGAGGCTGACTGAACTTATTGAAGCTTTCCGTGAGAGCACAGGTCAGTGCTATGACTCACAGGTGGGAACTACCCAGCTTGTATTAGTAGAAGGACCCAATAAGAGAGCTCCGGATACAGAACTAATTGGCAAGAGCGACAGAGGTCATAGAGTTTCTTTTGTCAATGTGCCGTTACCAGATCGAGATGCTGATTCAAATGAGGAACGGAATCCCAAAGTGGGTGATTATGTTGAAGTTCGTATACAGAAATCTTCAAGAGCGTCACTCTATGGAGAGGCAATTGCTATAAGTAAATTGAGCACTTTTTACAACATCGTGAATGAAGAAGCTCTTGCTTGTGCGAGTAGTTGA

Protein Analysis

634

Amino Acids

71.69

Weight (kDa)

8.47

Isoelectric Point (pI)

46.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UPF0004 PF00919 124 - 236 4.5e-25 Uncharacterized protein family UPF0004
Radical_SAM PF04055 284 - 480 2e-27 Radical SAM superfamily
TRAM PF01938 536 - 611 8.8e-09 TRAM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014389)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G36390
fragaria_vesca FvH4_1g12320
malus_domestica MD02G1137900.v1.1 MD15G1251600.v1.1
prunus_persica Prupe.7G162800_v2.0.a1
pyrus_communis pycom02g10930 pycom15g22170
rosa_chinensis RchiOBHm_Chr2g0100141
rosa_laevigata RLG00000016940
rosa_multiflora Rmu_sc0018554.1_g000003
rosa_roxburghii Rroxscaffold_2G00142530
rosa_rugosa Rorug02G0086000
rosa_samantha Rh2AG134700 Rh2BG138400 Rh2CG140200 Rh2DG140400
rosa_wichuraiana Rw2G010530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 919
AccI GTMKAC 1 cut(s) 1792
AccII CGCG 3 cut(s) 21, 23, 733
AccIII TCCGGA 3 cut(s) 167, 1531, 1660
AclWI GGATC 1 cut(s) 1143
AcsI RAATTY 1 cut(s) 832
AcuI CTGAAG 1 cut(s) 1068
AfaI GTAC 2 cut(s) 202, 719
AfiI CCNNNNNNNGG 4 cut(s) 204, 1367, 1444, 1769
AflII CTTAAG 1 cut(s) 566
AflIII ACRYGT 2 cut(s) 503, 1470
AgsI TTSAA 6 cut(s) 661, 837, 1571, 1746, 1784, 1806
AhlI ACTAGT 1 cut(s) 1058
AjiI CACGTC 1 cut(s) 926
Alw21I GWGCWC 5 cut(s) 248, 884, 1589, 1660, 1853
Alw26I GTCTC 6 cut(s) 130, 377, 788, 1221, 1400, 1421
AlwI GGATC 1 cut(s) 1143
Ama87I CYCGRG 1 cut(s) 241
Aor13HI TCCGGA 3 cut(s) 167, 1531, 1660
AoxI GGCC 4 cut(s) 37, 277, 306, 997
ApeKI GCWGC 2 cut(s) 190, 541
ApoI RAATTY 1 cut(s) 832
ArsI GACNNNNNNTTYG 4 cut(s) 205, 237, 1224, 1256
AseI ATTAAT 2 cut(s) 498, 771
AspLEI GCGC 3 cut(s) 21, 23, 25
AspS9I GGNCC 5 cut(s) 195, 278, 707, 1417, 1643
AsuHPI GGTGA 3 cut(s) 310, 1111, 1784
AsuII TTCGAA 1 cut(s) 820
AvaI CYCGRG 1 cut(s) 241
AvaII GGWCC 4 cut(s) 195, 707, 1417, 1643
BanII GRGCYC 2 cut(s) 248, 1660
BarI GAAGNNNNNNTAC 2 cut(s) 1776, 1808
BauI CACGAG 1 cut(s) 380
BbsI GAAGAC 1 cut(s) 1502
Bbv12I GWGCWC 5 cut(s) 248, 884, 1589, 1660, 1853
BbvCI CCTCAGC 1 cut(s) 333
BbvI GCAGC 2 cut(s) 202, 553
BceAI ACGGC 3 cut(s) 110, 292, 1705
BciVI GTATCC 1 cut(s) 1657
BcoDI GTCTC 6 cut(s) 130, 377, 788, 1221, 1400, 1421
BcuI ACTAGT 1 cut(s) 1058
BfaI CTAG 4 cut(s) 204, 674, 995, 1059
BfmI CTRYAG 1 cut(s) 1069
BfrI CTTAAG 1 cut(s) 566
BfuI GTATCC 1 cut(s) 1657
BglI GCCNNNNNGGC 1 cut(s) 367
BglII AGATCT 1 cut(s) 1330
BisI GCNGC 7 cut(s) 191, 309, 312, 542, 545, 731, 734
BlsI GCNGC 7 cut(s) 192, 310, 313, 543, 546, 732, 735
BmcAI AGTACT 1 cut(s) 202
Bme18I GGWCC 4 cut(s) 195, 707, 1417, 1643
BmeT110I CYCGRG 1 cut(s) 241
BmgBI CACGTC 1 cut(s) 926
BmgT120I GGNCC 5 cut(s) 195, 278, 707, 1417, 1643
BmiI GGNNCC 4 cut(s) 209, 229, 280, 1645
BmsI GCATC 6 cut(s) 167, 667, 703, 1012, 1380, 1726
BoxI GACNNNNGTC 2 cut(s) 756, 1692
BpiI GAAGAC 1 cut(s) 1502
BplI GAGNNNNNCTC 2 cut(s) 1800, 1832
BpmI CTGGAG 3 cut(s) 95, 214, 232
Bpu10I CCTNAGC 2 cut(s) 303, 333
Bpu14I TTCGAA 1 cut(s) 820
BsaBI GATNNNNATC 1 cut(s) 1177
BsaJI CCNNGG 2 cut(s) 92, 731
BsaWI WCCGGW 3 cut(s) 167, 1531, 1660
BsaXI ACNNNNNCTCC 2 cut(s) 604, 634
Bsc4I CCNNNNNNNGG 4 cut(s) 204, 1367, 1444, 1769
Bse118I RCCGGY 2 cut(s) 154, 186
Bse1I ACTGG 2 cut(s) 198, 815
Bse3DI GCAATG 1 cut(s) 592
Bse8I GATNNNNATC 1 cut(s) 1177
BseAI TCCGGA 3 cut(s) 167, 1531, 1660
BseDI CCNNGG 2 cut(s) 92, 731
BseGI GGATG 2 cut(s) 647, 1178
BseJI GATNNNNATC 1 cut(s) 1177
BseLI CCNNNNNNNGG 4 cut(s) 204, 1367, 1444, 1769
BseMI GCAATG 1 cut(s) 592
BseMII CTCAG 7 cut(s) 125, 157, 317, 347, 465, 1020, 1401
BseNI ACTGG 2 cut(s) 198, 815
BsePI GCGCGC 2 cut(s) 19, 21
BseRI GAGGAG 4 cut(s) 131, 345, 1427, 1564
BseXI GCAGC 2 cut(s) 202, 553
BseYI CCCAGC 2 cut(s) 281, 1623
Bsh1236I CGCG 3 cut(s) 21, 23, 733
BshFI GGCC 4 cut(s) 39, 279, 308, 999
BsiHKAI GWGCWC 5 cut(s) 248, 884, 1589, 1660, 1853
BsiHKCI CYCGRG 1 cut(s) 241
BsiSI CCGG 5 cut(s) 155, 168, 187, 1532, 1661
BslFI GGGAC 2 cut(s) 530, 737
BslI CCNNNNNNNGG 4 cut(s) 204, 1367, 1444, 1769
BsmAI GTCTC 6 cut(s) 130, 377, 788, 1221, 1400, 1421
BsmBI CGTCTC 1 cut(s) 377
BsmFI GGGAC 2 cut(s) 530, 737
BsmI GAATGC 2 cut(s) 484, 1302
BsnI GGCC 4 cut(s) 39, 279, 308, 999
BsoBI CYCGRG 1 cut(s) 241
Bsp119I TTCGAA 1 cut(s) 820
Bsp1286I GDGCHC 5 cut(s) 248, 884, 1589, 1660, 1853
Bsp13I TCCGGA 3 cut(s) 167, 1531, 1660
Bsp143I GATC 5 cut(s) 510, 1126, 1135, 1330, 1729
BspANI GGCC 4 cut(s) 39, 279, 308, 999
BspCNI CTCAG 7 cut(s) 126, 156, 316, 346, 466, 1021, 1402
BspEI TCCGGA 3 cut(s) 167, 1531, 1660
BspFNI CGCG 3 cut(s) 21, 23, 733
BspLI GGNNCC 4 cut(s) 209, 229, 280, 1645
BspPI GGATC 1 cut(s) 1143
BspQI GCTCTTC 2 cut(s) 259, 575
BspT104I TTCGAA 1 cut(s) 820
BspTI CTTAAG 1 cut(s) 566
BsrBI CCGCTC 1 cut(s) 919
BsrDI GCAATG 1 cut(s) 592
BsrFI RCCGGY 2 cut(s) 154, 186
BsrI ACTGG 2 cut(s) 198, 815
BssAI RCCGGY 2 cut(s) 154, 186
BssECI CCNNGG 2 cut(s) 92, 731
BssHII GCGCGC 2 cut(s) 19, 21
BssMI GATC 5 cut(s) 510, 1126, 1135, 1330, 1729
BssNAI GTATAC 1 cut(s) 1793
BssSI CACGAG 1 cut(s) 380
Bst1107I GTATAC 1 cut(s) 1793
Bst2BI CACGAG 1 cut(s) 380
Bst4CI ACNGT 3 cut(s) 46, 758, 1073
Bst6I CTCTTC 7 cut(s) 70, 259, 264, 575, 783, 786, 1419
BstAFI CTTAAG 1 cut(s) 566
BstBI TTCGAA 1 cut(s) 820
BstC8I GCNNGC 4 cut(s) 21, 23, 156, 1263
BstDEI CTNAG 8 cut(s) 134, 143, 303, 333, 474, 1029, 1327, 1410
BstDSI CCRYGG 2 cut(s) 92, 731
BstENI CCTNNNNNAGG 1 cut(s) 1442
BstF5I GGATG 2 cut(s) 647, 1178
BstFNI CGCG 3 cut(s) 21, 23, 733
BstHHI GCGC 3 cut(s) 21, 23, 25
BstKTI GATC 5 cut(s) 513, 1129, 1138, 1333, 1732
BstMAI GTCTC 6 cut(s) 130, 377, 788, 1221, 1400, 1421
BstMBI GATC 5 cut(s) 510, 1126, 1135, 1330, 1729
BstMWI GCNNNNNNNGC 8 cut(s) 115, 234, 243, 308, 320, 367, 739, 1552
BstNSI RCATGY 3 cut(s) 101, 507, 1474
BstPAI GACNNNNGTC 2 cut(s) 756, 1692
BstSFI CTRYAG 1 cut(s) 1069
BstUI CGCG 3 cut(s) 21, 23, 733
BstV1I GCAGC 2 cut(s) 202, 553
BstV2I GAAGAC 1 cut(s) 1502
BstX2I RGATCY 1 cut(s) 1330
BstYI RGATCY 1 cut(s) 1330
BstZ17I GTATAC 1 cut(s) 1793
BsuI GTATCC 1 cut(s) 1657
BsuRI GGCC 4 cut(s) 39, 279, 308, 999
BtgI CCRYGG 2 cut(s) 92, 731
BtrI CACGTC 1 cut(s) 926
BtsCI GGATG 2 cut(s) 647, 1178
BtsI GCAGTG 2 cut(s) 989, 1384
BtsIMutI CAGTG 5 cut(s) 847, 989, 1078, 1384, 1601
Cac8I GCNNGC 4 cut(s) 21, 23, 156, 1263
CfoI GCGC 3 cut(s) 21, 23, 25
Cfr10I RCCGGY 2 cut(s) 154, 186
Cfr13I GGNCC 5 cut(s) 195, 278, 707, 1417, 1643
Cfr42I CCGCGG 1 cut(s) 734
CseI GACGC 1 cut(s) 1800
Csp6I GTAC 2 cut(s) 201, 718
CviAII CATG 8 cut(s) 98, 120, 415, 504, 1421, 1471, 1486, 1502
CviQI GTAC 2 cut(s) 201, 718
DdeI CTNAG 8 cut(s) 134, 143, 303, 333, 474, 1029, 1327, 1410
DpnI GATC 5 cut(s) 512, 1128, 1137, 1332, 1731
DpnII GATC 5 cut(s) 510, 1126, 1135, 1330, 1729
Eam1104I CTCTTC 7 cut(s) 70, 259, 264, 575, 783, 786, 1419
EarI CTCTTC 7 cut(s) 70, 259, 264, 575, 783, 786, 1419
EciI GGCGGA 2 cut(s) 278, 665
Ecl136II GAGCTC 2 cut(s) 246, 1658
Eco24I GRGCYC 2 cut(s) 248, 1660
Eco47I GGWCC 4 cut(s) 195, 707, 1417, 1643
Eco53kI GAGCTC 2 cut(s) 246, 1658
Eco57I CTGAAG 1 cut(s) 1068
Eco88I CYCGRG 1 cut(s) 241
EcoICRI GAGCTC 2 cut(s) 246, 1658
EcoNI CCTNNNNNAGG 1 cut(s) 1442
EcoO109I RGGNCCY 1 cut(s) 1643
EcoRI GAATTC 1 cut(s) 832
EcoT38I GRGCYC 2 cut(s) 248, 1660
Esp3I CGTCTC 1 cut(s) 377
FaeI CATG 8 cut(s) 101, 123, 418, 507, 1424, 1474, 1489, 1505
FalI AAGNNNNNCTT 2 cut(s) 1866, 1898
FaqI GGGAC 2 cut(s) 530, 737
FatI CATG 8 cut(s) 97, 119, 414, 503, 1420, 1470, 1485, 1501
FauNDI CATATG 1 cut(s) 1388
FblI GTMKAC 1 cut(s) 1792
Fnu4HI GCNGC 7 cut(s) 191, 309, 312, 542, 545, 731, 734
FokI GGATG 2 cut(s) 654, 1165
FriOI GRGCYC 2 cut(s) 248, 1660
Fsp4HI GCNGC 7 cut(s) 191, 309, 312, 542, 545, 731, 734
FspBI CTAG 4 cut(s) 204, 674, 995, 1059
GlaI GCGC 3 cut(s) 20, 22, 24
GluI GCNGC 7 cut(s) 191, 309, 312, 542, 545, 731, 734
GsaI CCCAGC 2 cut(s) 285, 1627
GsuI CTGGAG 3 cut(s) 95, 214, 232
HaeIII GGCC 4 cut(s) 39, 279, 308, 999
HapII CCGG 5 cut(s) 155, 168, 187, 1532, 1661
HgaI GACGC 1 cut(s) 1800
HhaI GCGC 3 cut(s) 21, 23, 25
Hin1II CATG 8 cut(s) 101, 123, 418, 507, 1424, 1474, 1489, 1505
Hin6I GCGC 3 cut(s) 19, 21, 23
HinP1I GCGC 3 cut(s) 19, 21, 23
HindIII AAGCTT 3 cut(s) 162, 235, 1572
HpaII CCGG 5 cut(s) 155, 168, 187, 1532, 1661
HphI GGTGA 3 cut(s) 310, 1111, 1784
Hpy166II GTNNAC 6 cut(s) 466, 612, 707, 751, 1115, 1793
Hpy8I GTNNAC 6 cut(s) 466, 612, 707, 751, 1115, 1793
Hpy99I CGWCG 3 cut(s) 278, 302, 1305
HpyAV CCTTC 7 cut(s) 4, 433, 526, 655, 965, 1070, 1634
HpyCH4III ACNGT 3 cut(s) 46, 758, 1073
HpyCH4IV ACGT 4 cut(s) 386, 468, 925, 1117
HpyF10VI GCNNNNNNNGC 8 cut(s) 115, 234, 243, 308, 320, 367, 739, 1552
HpyF3I CTNAG 8 cut(s) 134, 143, 303, 333, 474, 1029, 1327, 1410
HpySE526I ACGT 4 cut(s) 386, 468, 925, 1117
Hsp92II CATG 8 cut(s) 101, 123, 418, 507, 1424, 1474, 1489, 1505
HspAI GCGC 3 cut(s) 19, 21, 23
Kpn2I TCCGGA 3 cut(s) 167, 1531, 1660
KroI GCCGGC 1 cut(s) 154
KroNI GCCGGC 1 cut(s) 156
KspI CCGCGG 1 cut(s) 734
Kzo9I GATC 5 cut(s) 510, 1126, 1135, 1330, 1729
LguI GCTCTTC 2 cut(s) 259, 575
LmnI GCTCC 6 cut(s) 114, 213, 233, 251, 358, 1663
Lsp1109I GCAGC 2 cut(s) 202, 553
LweI GCATC 6 cut(s) 167, 667, 703, 1012, 1380, 1726
MaeI CTAG 4 cut(s) 204, 674, 995, 1059
MaeII ACGT 4 cut(s) 386, 468, 925, 1117
MaeIII GTNAC 5 cut(s) 316, 921, 985, 1722, 1812
MalI GATC 5 cut(s) 512, 1128, 1137, 1332, 1731
MbiI CCGCTC 1 cut(s) 919
MboI GATC 5 cut(s) 510, 1126, 1135, 1330, 1729
MfeI CAATTG 2 cut(s) 939, 1830
MflI RGATCY 1 cut(s) 1330
MhlI GDGCHC 5 cut(s) 248, 884, 1589, 1660, 1853
MluCI AATT 7 cut(s) 550, 832, 939, 1356, 1674, 1830, 1844
MlyI GAGTC 3 cut(s) 132, 229, 1598
MmeI TCCRAC 4 cut(s) 128, 297, 1043, 1432
MroI TCCGGA 3 cut(s) 167, 1531, 1660
MroNI GCCGGC 1 cut(s) 154
MseI TTAA 5 cut(s) 498, 549, 567, 591, 771
MslI CAYNNNNRTG 1 cut(s) 47
MspA1I CMGCKG 3 cut(s) 193, 544, 733
MspCI CTTAAG 1 cut(s) 566
MspI CCGG 5 cut(s) 155, 168, 187, 1532, 1661
MunI CAATTG 2 cut(s) 939, 1830
Mva1269I GAATGC 2 cut(s) 484, 1302
MvnI CGCG 3 cut(s) 21, 23, 733
MwoI GCNNNNNNNGC 8 cut(s) 115, 234, 243, 308, 320, 367, 739, 1552
NaeI GCCGGC 1 cut(s) 156
NdeI CATATG 1 cut(s) 1388
NdeII GATC 5 cut(s) 510, 1126, 1135, 1330, 1729
NgoMIV GCCGGC 1 cut(s) 154
NlaIII CATG 8 cut(s) 101, 123, 418, 507, 1424, 1474, 1489, 1505
NlaIV GGNNCC 4 cut(s) 209, 229, 280, 1645
NmuCI GTSAC 3 cut(s) 316, 921, 1812
NspI RCATGY 3 cut(s) 101, 507, 1474
NspV TTCGAA 1 cut(s) 820
PaeR7I CTCGAG 1 cut(s) 241
PauI GCGCGC 2 cut(s) 19, 21
PciI ACATGT 2 cut(s) 503, 1470
PciSI GCTCTTC 2 cut(s) 259, 575
PctI GAATGC 2 cut(s) 484, 1302
PdiI GCCGGC 1 cut(s) 156
PfeI GAWTC 8 cut(s) 79, 171, 372, 822, 935, 1167, 1742, 1759
PflFI GACNNNGTC 1 cut(s) 219
PkrI GCNGC 7 cut(s) 192, 310, 313, 543, 546, 732, 735
PleI GAGTC 3 cut(s) 132, 228, 1598
PpsI GAGTC 3 cut(s) 132, 228, 1598
PpuMI RGGWCCY 1 cut(s) 1643
PscI ACATGT 2 cut(s) 503, 1470
PshAI GACNNNNGTC 2 cut(s) 756, 1692
PshBI ATTAAT 2 cut(s) 498, 771
Psp124BI GAGCTC 2 cut(s) 248, 1660
Psp5II RGGWCCY 1 cut(s) 1643
PspFI CCCAGC 2 cut(s) 281, 1623
PspN4I GGNNCC 4 cut(s) 209, 229, 280, 1645
PspPI GGNCC 5 cut(s) 195, 278, 707, 1417, 1643
PspPPI RGGWCCY 1 cut(s) 1643
PsuI RGATCY 1 cut(s) 1330
PsyI GACNNNGTC 1 cut(s) 219
PteI GCGCGC 2 cut(s) 19, 21
RsaI GTAC 2 cut(s) 202, 719
RsaNI GTAC 2 cut(s) 201, 718
RseI CAYNNNNRTG 1 cut(s) 47
SacI GAGCTC 2 cut(s) 248, 1660
SacII CCGCGG 1 cut(s) 734
SapI GCTCTTC 2 cut(s) 259, 575
SaqAI TTAA 5 cut(s) 498, 549, 567, 591, 771
SatI GCNGC 7 cut(s) 191, 309, 312, 542, 545, 731, 734
Sau3AI GATC 5 cut(s) 510, 1126, 1135, 1330, 1729
Sau96I GGNCC 5 cut(s) 195, 278, 707, 1417, 1643
ScaI AGTACT 1 cut(s) 202
SchI GAGTC 3 cut(s) 132, 229, 1598
SduI GDGCHC 5 cut(s) 248, 884, 1589, 1660, 1853
SfaNI GCATC 6 cut(s) 167, 667, 703, 1012, 1380, 1726
SfcI CTRYAG 1 cut(s) 1069
Sfr274I CTCGAG 1 cut(s) 241
Sfr303I CCGCGG 1 cut(s) 734
SfuI TTCGAA 1 cut(s) 820
SgrBI CCGCGG 1 cut(s) 734
SinI GGWCC 4 cut(s) 195, 707, 1417, 1643
SlaI CTCGAG 1 cut(s) 241
SmiMI CAYNNNNRTG 1 cut(s) 47
SmlI CTYRAG 2 cut(s) 241, 566
SmoI CTYRAG 2 cut(s) 241, 566
SpeI ACTAGT 1 cut(s) 1058
Sse9I AATT 7 cut(s) 550, 832, 939, 1356, 1674, 1830, 1844
SspI AATATT 1 cut(s) 1240
SspMI CTAG 4 cut(s) 204, 674, 995, 1059
SstI GAGCTC 2 cut(s) 248, 1660
TaaI ACNGT 3 cut(s) 46, 758, 1073
TaiI ACGT 4 cut(s) 389, 471, 928, 1120
TaqI TCGA 6 cut(s) 77, 242, 431, 693, 820, 1732
TasI AATT 7 cut(s) 550, 832, 939, 1356, 1674, 1830, 1844
TatI WGTACW 1 cut(s) 200
TauI GCSGC 5 cut(s) 311, 314, 547, 733, 736
TfiI GAWTC 8 cut(s) 79, 171, 372, 822, 935, 1167, 1742, 1759
Tru1I TTAA 5 cut(s) 498, 549, 567, 591, 771
Tru9I TTAA 5 cut(s) 498, 549, 567, 591, 771
TscAI CASTG 5 cut(s) 847, 996, 1078, 1384, 1601
TseFI GTSAC 3 cut(s) 316, 921, 1812
TseI GCWGC 2 cut(s) 190, 541
Tsp45I GTSAC 3 cut(s) 316, 921, 1812
TspDTI ATGAA 8 cut(s) 416, 452, 484, 774, 1050, 1375, 1437, 1887
TspGWI ACGGA 4 cut(s) 232, 1363, 1568, 1771
TspRI CASTG 5 cut(s) 847, 996, 1078, 1384, 1601
Tth111I GACNNNGTC 1 cut(s) 219
Vha464I CTTAAG 1 cut(s) 566
VpaK11BI GGWCC 4 cut(s) 195, 707, 1417, 1643
VspI ATTAAT 2 cut(s) 498, 771
XagI CCTNNNNNAGG 1 cut(s) 1442
XapI RAATTY 1 cut(s) 832
XceI RCATGY 3 cut(s) 101, 507, 1474
XcmI CCANNNNNNNNNTGG 1 cut(s) 386
XhoI CTCGAG 1 cut(s) 241
XmiI GTMKAC 1 cut(s) 1792
XspI CTAG 4 cut(s) 204, 674, 995, 1059
ZrmI AGTACT 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.