Rh2BG138400

TRAM domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0014389
Physical Location & Seq
Forward (+)
11805695 .. 11809396
3702 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG138400.1

Sequence Viewer

Length: 1917 bp
ATGAGAACGAAGCAGGAACACTACCTACTAGTCTCTGGCCTCACAGTAATGGCGACCTCGCTCTCGTCTCTGTCCTCGATTTTGAACCAACCTCACTGCGCTCTCCGCCTGAAGCTCCAGAAGCCATGTCGTTTTGCTCTCCGGTTACTGAATTGGAAACCGGAAGAAGGTTCCGGAATCCGATGCTACTACCATCGGCAGCGGACCACTACTCGGCTGCAAAGGAGGAGTCTTGGCTCCAGAAGCTTCTCTCAGTCGAGCTCTTCTCTTCCGAACCACTCCGACGGCCCCAGCCTCCGCCACTTCGTCGCCCAGGCCGCCGCTCTCACCGCTTCCGAGGCCCAGGCCCTGAATGTGGTAGCTCCTGAAGGTCCTCCGATAGGCCGCATCTATCATGAGACTTACGGGTGTCAGATGAATATTAATGACATGGAGATTGTCCTGTCTATTATGAAGGAGGCTGGATATAGTGAAGTTGTGGATGTTCCTGAGAATGCAGAGGTTATTTTCATTAATACCTGTGCTATCAGGGACAATGCAGAACAGAAGGTGTGGCAACGGCTTAATTACTTCTGGTTTCTTAAGAGGCACTGGAAGAGCAATGTTAAGATAGGGAGGTCGCAATCCACACGCCCTCCGAAAGTTGTGGTTTTGGGATGTATGGCCGAGAGGTTAAAGGACAAGATACTAGATGCAGACAAAATGGTCGATGTGGTCTGTGGGCCTGATGCGTACAGGGACTTGCCACGGTTACTGCAAGATGTGGACTATGGTCAGAAAGGTATCAATACTCTTCTTTCACTGGAAGAGACTTACGCTGATATTAGTCCAGTTCGAATCTCCAAAAATTCAATCAGTGCTTTCGTTTCTGTTATGAGGGGTTGCAACAATATGTGCTCTTTTTGCATTGTTCCTTTCACAAGAGGCAGAGAGCGGTCACGTCCTGTGGAATCAATTGTCAGGGAGGTGGGAGAGCTTTGGCAAGAAGGTGTGAAAGAGGTGACACTGCTAGGCCAGAATGTAAATAGCTATAATGATGCCTCTGAGTATGAAAAGGAAGCTGAAGCAGGAACTAATTGGAACTACAGTGAAGGATTTTCCAGCTTGTGTAAGGTGAAAAAAGTAGGTTCACGTTTTGCTGATCTCTTGGACCGACTTTCCACAGAATTTCCAGAGATGAGATTCAGATACACATCCCCCCACCCTAAAGATTTCCCTGATGAGTTACTCTATATAATGCGAGACAGACATAATATTTGCAACTCTATCCATTTGCCTGCTCAAAGTGGTAGTAGCAGAGTTATAGAAAGAATGCGTCGGGGCTATACTCGTGAGGCATACTTAGATCTCGTGCAAAAGATAAGGAGGATTATTCCAGATGTCGGCATCAGTAGTGATTTCATATGTGGATTTTGTGGGGAGACTGAGGAGGACCATGAAGAGACAATAAGCCTTGTAAAGGCTGTGGGTTATGATATGGCTTACATGTTTGCATATAGCATGAGAGATAAAACCCATGCAAATAGAAACTATGATGATGATGTTCTGGAGAAAGTGAAGCAGAGGAGGCTGACTGAACTTATTGAAGCTTTCCGTGAGAGCACAGGCCAGTGTTATGACTCACAGGTGGGAACTACCCAACTTGTATTAGTAGAAGGACCCAATAAGAGAGCTCCGGATACAGAACTCATTGGCAAGAGTGACAGAGGTCATAGAGTTTCTTTCGTCAATGTGCCATTACCAAATCGAGATGCTGATTCAAATGAGGAACGGAATCCCAAAGTGGGTGATTATGTTGAAGTTTGTATTCAGAAGTCTACAAGAGCGTCACTCTATGGAGAGGCAATTGCTATAAGCAAATTGAGCTCTTTTTATAACATCGTGAATGAAGAAGCTCTTGCTTGTGCAAGTAGTTGA

Protein Analysis

638

Amino Acids

72.3

Weight (kDa)

7.49

Isoelectric Point (pI)

45.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UPF0004 PF00919 129 - 241 4.6e-25 Uncharacterized protein family UPF0004
Radical_SAM PF04055 289 - 485 3.7e-27 Radical SAM superfamily
TRAM PF01938 541 - 616 7e-08 TRAM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014389)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G36390
fragaria_vesca FvH4_1g12320
malus_domestica MD02G1137900.v1.1 MD15G1251600.v1.1
prunus_persica Prupe.7G162800_v2.0.a1
pyrus_communis pycom02g10930 pycom15g22170
rosa_chinensis RchiOBHm_Chr2g0100141
rosa_laevigata RLG00000016940
rosa_multiflora Rmu_sc0018554.1_g000003
rosa_roxburghii Rroxscaffold_2G00142530
rosa_rugosa Rorug02G0086000
rosa_samantha Rh2AG134700 Rh2BG138400 Rh2CG140200 Rh2DG140400
rosa_wichuraiana Rw2G010530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1875
AasI GACNNNNNNGTC 1 cut(s) 704
AccBSI CCGCTC 2 cut(s) 323, 934
AccI GTMKAC 1 cut(s) 1817
AccIII TCCGGA 2 cut(s) 173, 1675
AciI CCGC 8 cut(s) 106, 202, 298, 318, 321, 330, 385, 934
AcoI YGGCCR 1 cut(s) 663
AcsI RAATTY 2 cut(s) 847, 1166
AcuI CTGAAG 3 cut(s) 131, 387, 1083
AfaI GTAC 1 cut(s) 734
AfiI CCNNNNNNNGG 7 cut(s) 167, 213, 355, 380, 1382, 1459, 1784
AflII CTTAAG 1 cut(s) 581
AflIII ACRYGT 1 cut(s) 1485
AgsI TTSAA 5 cut(s) 85, 852, 1586, 1761, 1799
AhlI ACTAGT 1 cut(s) 28
AjiI CACGTC 1 cut(s) 941
AjnI CCWGG 2 cut(s) 312, 342
Alw21I GWGCWC 5 cut(s) 263, 899, 1604, 1675, 1868
Alw26I GTCTC 7 cut(s) 37, 72, 392, 803, 1236, 1415, 1436
AlwNI CAGNNNCTG 1 cut(s) 349
Aor13HI TCCGGA 2 cut(s) 173, 1675
ApeKI GCWGC 2 cut(s) 199, 217
ApoI RAATTY 2 cut(s) 847, 1166
ArsI GACNNNNNNTTYG 4 cut(s) 214, 246, 1239, 1271
AseI ATTAAT 2 cut(s) 423, 513
AspLEI GCGC 1 cut(s) 101
AspS9I GGNCC 9 cut(s) 204, 287, 340, 346, 371, 722, 1150, 1432, 1658
AsuHPI GGTGA 4 cut(s) 319, 1012, 1126, 1799
AsuII TTCGAA 1 cut(s) 835
AvaII GGWCC 5 cut(s) 204, 371, 1150, 1432, 1658
BanII GRGCYC 3 cut(s) 263, 1675, 1868
BauI CACGAG 2 cut(s) 1329, 1349
Bbv12I GWGCWC 5 cut(s) 263, 899, 1604, 1675, 1868
BbvI GCAGC 2 cut(s) 204, 211
BccI CCATC 1 cut(s) 201
BceAI ACGGC 2 cut(s) 301, 575
BciT130I CCWGG 2 cut(s) 314, 344
BciVI GTATCC 1 cut(s) 1672
BcoDI GTCTC 7 cut(s) 37, 72, 392, 803, 1236, 1415, 1436
BcuI ACTAGT 1 cut(s) 28
BfaI CTAG 3 cut(s) 29, 689, 1010
BfmI CTRYAG 1 cut(s) 1084
BfrI CTTAAG 1 cut(s) 581
BfuI GTATCC 1 cut(s) 1672
BglII AGATCT 1 cut(s) 1345
BisI GCNGC 5 cut(s) 200, 218, 318, 321, 385
BlsI GCNGC 5 cut(s) 201, 219, 319, 322, 386
Bme1390I CCNGG 2 cut(s) 314, 344
Bme18I GGWCC 5 cut(s) 204, 371, 1150, 1432, 1658
BmgBI CACGTC 1 cut(s) 941
BmgT120I GGNCC 9 cut(s) 204, 287, 340, 346, 371, 722, 1150, 1432, 1658
BmiI GGNNCC 4 cut(s) 172, 238, 289, 1660
BmrFI CCNGG 2 cut(s) 314, 344
BmsI GCATC 7 cut(s) 173, 396, 682, 718, 1027, 1395, 1741
BoxI GACNNNNGTC 2 cut(s) 771, 1707
BplI GAGNNNNNCTC 4 cut(s) 250, 282, 1815, 1847
BpmI CTGGAG 3 cut(s) 101, 223, 1568
Bpu14I TTCGAA 1 cut(s) 835
BsaBI GATNNNNATC 1 cut(s) 1192
BsaJI CCNNGG 4 cut(s) 312, 336, 342, 746
BsaWI WCCGGW 4 cut(s) 141, 160, 173, 1675
BsaXI ACNNNNNCTCC 2 cut(s) 619, 649
Bsc4I CCNNNNNNNGG 7 cut(s) 167, 213, 355, 380, 1382, 1459, 1784
Bse1I ACTGG 4 cut(s) 596, 807, 830, 1609
Bse3DI GCAATG 1 cut(s) 607
Bse8I GATNNNNATC 1 cut(s) 1192
BseAI TCCGGA 2 cut(s) 173, 1675
BseBI CCWGG 2 cut(s) 314, 344
BseDI CCNNGG 4 cut(s) 312, 336, 342, 746
BseGI GGATG 3 cut(s) 487, 662, 1193
BseJI GATNNNNATC 1 cut(s) 1192
BseLI CCNNNNNNNGG 7 cut(s) 167, 213, 355, 380, 1382, 1459, 1784
BseMI GCAATG 1 cut(s) 607
BseMII CTCAG 4 cut(s) 266, 480, 1035, 1416
BseNI ACTGG 4 cut(s) 596, 807, 830, 1609
BseRI GAGGAG 3 cut(s) 241, 1442, 1579
BseXI GCAGC 2 cut(s) 204, 211
BseYI CCCAGC 1 cut(s) 290
BsiHKAI GWGCWC 5 cut(s) 263, 899, 1604, 1675, 1868
BsiSI CCGG 4 cut(s) 142, 161, 174, 1676
BslFI GGGAC 2 cut(s) 545, 752
BslI CCNNNNNNNGG 7 cut(s) 167, 213, 355, 380, 1382, 1459, 1784
BsmAI GTCTC 7 cut(s) 37, 72, 392, 803, 1236, 1415, 1436
BsmBI CGTCTC 1 cut(s) 72
BsmFI GGGAC 2 cut(s) 545, 752
BsmI GAATGC 2 cut(s) 499, 1317
Bsp119I TTCGAA 1 cut(s) 835
Bsp1286I GDGCHC 5 cut(s) 263, 899, 1604, 1675, 1868
Bsp13I TCCGGA 2 cut(s) 173, 1675
Bsp143I GATC 2 cut(s) 1141, 1345
BspACI CCGC 8 cut(s) 106, 202, 298, 318, 321, 330, 385, 934
BspCNI CTCAG 4 cut(s) 265, 481, 1036, 1417
BspEI TCCGGA 2 cut(s) 173, 1675
BspHI TCATGA 1 cut(s) 394
BspLI GGNNCC 4 cut(s) 172, 238, 289, 1660
BspQI GCTCTTC 2 cut(s) 268, 590
BspT104I TTCGAA 1 cut(s) 835
BspTI CTTAAG 1 cut(s) 581
BsrBI CCGCTC 2 cut(s) 323, 934
BsrDI GCAATG 1 cut(s) 607
BsrI ACTGG 4 cut(s) 596, 807, 830, 1609
BssECI CCNNGG 4 cut(s) 312, 336, 342, 746
BssMI GATC 2 cut(s) 1141, 1345
BssSI CACGAG 2 cut(s) 1329, 1349
Bst2BI CACGAG 2 cut(s) 1329, 1349
Bst2UI CCWGG 2 cut(s) 314, 344
Bst4CI ACNGT 3 cut(s) 46, 750, 1088
Bst6I CTCTTC 6 cut(s) 268, 273, 590, 798, 801, 1434
BstAFI CTTAAG 1 cut(s) 581
BstBI TTCGAA 1 cut(s) 835
BstC8I GCNNGC 1 cut(s) 1278
BstDEI CTNAG 5 cut(s) 252, 489, 1044, 1342, 1425
BstDSI CCRYGG 1 cut(s) 746
BstENI CCTNNNNNAGG 2 cut(s) 378, 1457
BstF5I GGATG 3 cut(s) 487, 662, 1193
BstHHI GCGC 1 cut(s) 101
BstKTI GATC 2 cut(s) 1144, 1348
BstMAI GTCTC 7 cut(s) 37, 72, 392, 803, 1236, 1415, 1436
BstMBI GATC 2 cut(s) 1141, 1345
BstMWI GCNNNNNNNGC 9 cut(s) 105, 121, 243, 317, 329, 338, 903, 1567, 1863
BstNI CCWGG 2 cut(s) 314, 344
BstNSI RCATGY 1 cut(s) 1489
BstPAI GACNNNNGTC 2 cut(s) 771, 1707
BstSCI CCNGG 2 cut(s) 312, 342
BstSFI CTRYAG 1 cut(s) 1084
BstV1I GCAGC 2 cut(s) 204, 211
BstX2I RGATCY 1 cut(s) 1345
BstYI RGATCY 1 cut(s) 1345
BsuI GTATCC 1 cut(s) 1672
BtgI CCRYGG 1 cut(s) 746
BtrI CACGTC 1 cut(s) 941
BtsCI GGATG 3 cut(s) 487, 662, 1193
BtsI GCAGTG 2 cut(s) 94, 1004
BtsIMutI CAGTG 7 cut(s) 94, 589, 800, 862, 1004, 1093, 1616
Cac8I GCNNGC 1 cut(s) 1278
CaiI CAGNNNCTG 1 cut(s) 349
CciI TCATGA 1 cut(s) 394
CfoI GCGC 1 cut(s) 101
Cfr13I GGNCC 9 cut(s) 204, 287, 340, 346, 371, 722, 1150, 1432, 1658
CseI GACGC 2 cut(s) 1304, 1815
Csp6I GTAC 1 cut(s) 733
CviAII CATG 7 cut(s) 126, 395, 430, 1436, 1486, 1501, 1517
CviQI GTAC 1 cut(s) 733
DdeI CTNAG 5 cut(s) 252, 489, 1044, 1342, 1425
DpnI GATC 2 cut(s) 1143, 1347
DpnII GATC 2 cut(s) 1141, 1345
DrdI GACNNNNNNGTC 1 cut(s) 704
DseDI GACNNNNNNGTC 1 cut(s) 704
EaeI YGGCCR 1 cut(s) 663
Eam1104I CTCTTC 6 cut(s) 268, 273, 590, 798, 801, 1434
EarI CTCTTC 6 cut(s) 268, 273, 590, 798, 801, 1434
EciI GGCGGA 2 cut(s) 95, 287
Ecl136II GAGCTC 3 cut(s) 261, 1673, 1866
Eco24I GRGCYC 3 cut(s) 263, 1675, 1868
Eco47I GGWCC 5 cut(s) 204, 371, 1150, 1432, 1658
Eco53kI GAGCTC 3 cut(s) 261, 1673, 1866
Eco57I CTGAAG 3 cut(s) 131, 387, 1083
EcoICRI GAGCTC 3 cut(s) 261, 1673, 1866
EcoNI CCTNNNNNAGG 2 cut(s) 378, 1457
EcoO109I RGGNCCY 3 cut(s) 346, 371, 1658
EcoRII CCWGG 2 cut(s) 312, 342
EcoT38I GRGCYC 3 cut(s) 263, 1675, 1868
Esp3I CGTCTC 1 cut(s) 72
FaeI CATG 7 cut(s) 129, 398, 433, 1439, 1489, 1504, 1520
FalI AAGNNNNNCTT 2 cut(s) 1881, 1913
FaqI GGGAC 2 cut(s) 545, 752
FatI CATG 7 cut(s) 125, 394, 429, 1435, 1485, 1500, 1516
FauNDI CATATG 1 cut(s) 1403
FblI GTMKAC 1 cut(s) 1817
Fnu4HI GCNGC 5 cut(s) 200, 218, 318, 321, 385
FokI GGATG 3 cut(s) 494, 669, 1180
FriOI GRGCYC 3 cut(s) 263, 1675, 1868
Fsp4HI GCNGC 5 cut(s) 200, 218, 318, 321, 385
FspBI CTAG 3 cut(s) 29, 689, 1010
GlaI GCGC 1 cut(s) 100
GluI GCNGC 5 cut(s) 200, 218, 318, 321, 385
GsaI CCCAGC 1 cut(s) 294
GsuI CTGGAG 3 cut(s) 101, 223, 1568
HapII CCGG 4 cut(s) 142, 161, 174, 1676
HgaI GACGC 2 cut(s) 1304, 1815
HhaI GCGC 1 cut(s) 101
Hin1II CATG 7 cut(s) 129, 398, 433, 1439, 1489, 1504, 1520
Hin6I GCGC 1 cut(s) 99
HinP1I GCGC 1 cut(s) 99
HindIII AAGCTT 2 cut(s) 244, 1587
HinfI GANTC 8 cut(s) 177, 229, 837, 950, 1182, 1619, 1757, 1774
HpaII CCGG 4 cut(s) 142, 161, 174, 1676
HphI GGTGA 4 cut(s) 319, 1012, 1126, 1799
Hpy166II GTNNAC 3 cut(s) 766, 1130, 1818
Hpy8I GTNNAC 3 cut(s) 766, 1130, 1818
Hpy99I CGWCG 3 cut(s) 287, 311, 1320
HpyAV CCTTC 7 cut(s) 161, 362, 448, 541, 980, 1085, 1649
HpyCH4III ACNGT 3 cut(s) 46, 750, 1088
HpyCH4IV ACGT 2 cut(s) 940, 1132
HpyF10VI GCNNNNNNNGC 9 cut(s) 105, 121, 243, 317, 329, 338, 903, 1567, 1863
HpyF3I CTNAG 5 cut(s) 252, 489, 1044, 1342, 1425
HpySE526I ACGT 2 cut(s) 940, 1132
Hsp92II CATG 7 cut(s) 129, 398, 433, 1439, 1489, 1504, 1520
HspAI GCGC 1 cut(s) 99
Kpn2I TCCGGA 2 cut(s) 173, 1675
Kzo9I GATC 2 cut(s) 1141, 1345
LguI GCTCTTC 2 cut(s) 268, 590
LmnI GCTCC 4 cut(s) 120, 242, 367, 1678
Lsp1109I GCAGC 2 cut(s) 204, 211
LweI GCATC 7 cut(s) 173, 396, 682, 718, 1027, 1395, 1741
MaeI CTAG 3 cut(s) 29, 689, 1010
MaeII ACGT 2 cut(s) 940, 1132
MaeIII GTNAC 7 cut(s) 144, 750, 936, 1000, 1224, 1700, 1827
MalI GATC 2 cut(s) 1143, 1347
MbiI CCGCTC 2 cut(s) 323, 934
MboI GATC 2 cut(s) 1141, 1345
MboII GAAGA 8 cut(s) 176, 255, 260, 607, 785, 818, 1451, 1901
MfeI CAATTG 2 cut(s) 954, 1845
MflI RGATCY 1 cut(s) 1345
MhlI GDGCHC 5 cut(s) 263, 899, 1604, 1675, 1868
MluCI AATT 8 cut(s) 151, 565, 847, 954, 1075, 1166, 1845, 1859
MlyI GAGTC 2 cut(s) 238, 1613
MmeI TCCRAC 1 cut(s) 306
MroI TCCGGA 2 cut(s) 173, 1675
MseI TTAA 6 cut(s) 423, 513, 564, 582, 606, 674
MslI CAYNNNNRTG 1 cut(s) 47
MspA1I CMGCKG 1 cut(s) 202
MspCI CTTAAG 1 cut(s) 581
MspI CCGG 4 cut(s) 142, 161, 174, 1676
MspR9I CCNGG 2 cut(s) 314, 344
MunI CAATTG 2 cut(s) 954, 1845
Mva1269I GAATGC 2 cut(s) 499, 1317
MvaI CCWGG 2 cut(s) 314, 344
MwoI GCNNNNNNNGC 9 cut(s) 105, 121, 243, 317, 329, 338, 903, 1567, 1863
NdeI CATATG 1 cut(s) 1403
NdeII GATC 2 cut(s) 1141, 1345
NlaIII CATG 7 cut(s) 129, 398, 433, 1439, 1489, 1504, 1520
NlaIV GGNNCC 4 cut(s) 172, 238, 289, 1660
NmeAIII GCCGAG 2 cut(s) 193, 691
NmuCI GTSAC 4 cut(s) 936, 1000, 1700, 1827
NspI RCATGY 1 cut(s) 1489
NspV TTCGAA 1 cut(s) 835
PagI TCATGA 1 cut(s) 394
PciI ACATGT 1 cut(s) 1485
PciSI GCTCTTC 2 cut(s) 268, 590
PctI GAATGC 2 cut(s) 499, 1317
PfeI GAWTC 6 cut(s) 177, 837, 950, 1182, 1757, 1774
PkrI GCNGC 5 cut(s) 201, 219, 319, 322, 386
PleI GAGTC 2 cut(s) 237, 1613
PpsI GAGTC 2 cut(s) 237, 1613
PpuMI RGGWCCY 2 cut(s) 371, 1658
PscI ACATGT 1 cut(s) 1485
PshAI GACNNNNGTC 2 cut(s) 771, 1707
PshBI ATTAAT 2 cut(s) 423, 513
PsiI TTATAA 1 cut(s) 1875
Psp124BI GAGCTC 3 cut(s) 263, 1675, 1868
Psp5II RGGWCCY 2 cut(s) 371, 1658
Psp6I CCWGG 2 cut(s) 312, 342
PspFI CCCAGC 1 cut(s) 290
PspGI CCWGG 2 cut(s) 312, 342
PspN4I GGNNCC 4 cut(s) 172, 238, 289, 1660
PspPI GGNCC 9 cut(s) 204, 287, 340, 346, 371, 722, 1150, 1432, 1658
PspPPI RGGWCCY 2 cut(s) 371, 1658
PsrI GAACNNNNNNTAC 2 cut(s) 9, 41
PstNI CAGNNNCTG 1 cut(s) 349
PsuI RGATCY 1 cut(s) 1345
RsaI GTAC 1 cut(s) 734
RsaNI GTAC 1 cut(s) 733
RseI CAYNNNNRTG 1 cut(s) 47
SacI GAGCTC 3 cut(s) 263, 1675, 1868
SapI GCTCTTC 2 cut(s) 268, 590
SaqAI TTAA 6 cut(s) 423, 513, 564, 582, 606, 674
SatI GCNGC 5 cut(s) 200, 218, 318, 321, 385
Sau3AI GATC 2 cut(s) 1141, 1345
Sau96I GGNCC 9 cut(s) 204, 287, 340, 346, 371, 722, 1150, 1432, 1658
SchI GAGTC 2 cut(s) 238, 1613
ScrFI CCNGG 2 cut(s) 314, 344
SduI GDGCHC 5 cut(s) 263, 899, 1604, 1675, 1868
SfaNI GCATC 7 cut(s) 173, 396, 682, 718, 1027, 1395, 1741
SfcI CTRYAG 1 cut(s) 1084
SfuI TTCGAA 1 cut(s) 835
SinI GGWCC 5 cut(s) 204, 371, 1150, 1432, 1658
SmiMI CAYNNNNRTG 1 cut(s) 47
SmlI CTYRAG 1 cut(s) 581
SmoI CTYRAG 1 cut(s) 581
SpeI ACTAGT 1 cut(s) 28
Sse9I AATT 8 cut(s) 151, 565, 847, 954, 1075, 1166, 1845, 1859
SsiI CCGC 8 cut(s) 106, 202, 298, 318, 321, 330, 385, 934
SspI AATATT 2 cut(s) 421, 1255
SspMI CTAG 3 cut(s) 29, 689, 1010
SstI GAGCTC 3 cut(s) 263, 1675, 1868
StyD4I CCNGG 2 cut(s) 312, 342
TaaI ACNGT 3 cut(s) 46, 750, 1088
TaiI ACGT 2 cut(s) 943, 1135
TaqI TCGA 5 cut(s) 77, 257, 708, 835, 1747
TaqII GACCGA 1 cut(s) 1167
TasI AATT 8 cut(s) 151, 565, 847, 954, 1075, 1166, 1845, 1859
TauI GCSGC 3 cut(s) 320, 323, 387
TfiI GAWTC 6 cut(s) 177, 837, 950, 1182, 1757, 1774
Tru1I TTAA 6 cut(s) 423, 513, 564, 582, 606, 674
Tru9I TTAA 6 cut(s) 423, 513, 564, 582, 606, 674
TscAI CASTG 7 cut(s) 101, 596, 807, 862, 1011, 1093, 1616
TseFI GTSAC 4 cut(s) 936, 1000, 1700, 1827
TseI GCWGC 2 cut(s) 199, 217
Tsp45I GTSAC 4 cut(s) 936, 1000, 1700, 1827
TspDTI ATGAA 7 cut(s) 431, 467, 499, 1065, 1390, 1452, 1902
TspGWI ACGGA 2 cut(s) 1583, 1786
TspRI CASTG 7 cut(s) 101, 596, 807, 862, 1011, 1093, 1616
Vha464I CTTAAG 1 cut(s) 581
VpaK11BI GGWCC 5 cut(s) 204, 371, 1150, 1432, 1658
VspI ATTAAT 2 cut(s) 423, 513
XagI CCTNNNNNAGG 2 cut(s) 378, 1457
XapI RAATTY 2 cut(s) 847, 1166
XceI RCATGY 1 cut(s) 1489
XmiI GTMKAC 1 cut(s) 1817
XspI CTAG 3 cut(s) 29, 689, 1010
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.