Rh2DG140400

TRAM domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0014389
Physical Location & Seq
Forward (+)
11776694 .. 11780342
3649 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG140400.1

Sequence Viewer

Length: 1869 bp
ATGGCGACCTCGCTCTCGTCTCTGTCCTCGATTTTGAACCAACCTCACTGCGCTCTCCGCCTGAAGCTCCAGAAGCCATGTCGTTTTGCTCTCCGGTTTCTGAATTGGAAACCGGAAGAAGCTTCCGGAATCCGATGCTACTACCATCGGCAGCGGACCACTACTCGGCTGCAAAGGAGGAGTCTTGGCTCCAGAAGCTTCTCTCAGTCGAGCTCTTCTCTTCCGAACCACTCCGACGGCCCCAGCCTCCGCCACTTCGTCGCCCAGGCCGCCGCTCTCACCGCTTCCGAGGCCCAGGCCCTGAATGTGGTAGCTCCTGAAGGTCCTCCGATAGGCCGCATCTATCATGAGACTTACGGGTGTCAGATGAATATTAATGACATGGAGATTGTCCTGTCTATTATGAAGGAGGCTGGATATAGTGAAGTTGTGGATGTTCCTGAGAATGCAGAGGTCATTTTCATTAATACCTGTGCTATCAGGGACAATGCAGAACAGAAGGTGTGGCAACGGCTTAATTACTTCTGGTTTCTTAAGAGGCACTGGAAGAGCAATGTTAAGATAGGGAGGTCGCAATCCACACGCCCTCCGAAAGTTGTGGTTTTGGGATGTATGGCCGAGAGGTTAAAGGACAAGATACTAGATGCAGACAAAATGGTCGATGTGGTCTGTGGGCCTGATGCGTACAGGGACTTGCCACGGTTACTGCAAGATGTGGACTATGGTCAGAAAGGGATCAATACTCTTCTTTCACTGGAAGAGACTTACGCTGATATTAGTCCAGTTCGAATCTCCAAAAATTCAATCAGTGCTTTCGTTTCTGTTATGAGGGGTTGCAACAATATGTGCTCTTTTTGCATTGTTCCTTTCACAAGAGGCAGAGAGCGTTCACGTCCTGTGGAGTCAATTGTCAGGGAGGTGGGAGAGCTTTGGCAAGAAGGTGTGAAAGAGGTGACACTGCTAGGCCAGAATGTAAATAGCTATAATGATGCCTCTGAGTATGAAAAGGAAGCTGAAGCAGGAACTAATTGGAACTACAGTGAAGGATTTTCCAGCTTGTGTAAGGTGAAAAAAGTAGGTTCACGTTTTGCTGATCTCTTGGACCGACTTTCCACAGAATTTCCAGAGATGAGATTCAGATACACATCCCCCCACCCTAAAGATTTCCCTGATGAGTTACTCTATATAATGCGAGACAGACATAATATTTGCAACTCTATCCATTTGCCTGCTCAAAGTGGTAGTAGCAGAGTTATAGAAAGAATGCGTCGGGGCTATACCCGGGAGGCATACTTAGATCTCGTGCAAAAGATAAGGAGGATTATTCCAGATGTCGGCATCAGTAGTGATTTCATATGTGGATTTTGTGGGGAGACTGAGGAGGACCATGAAGAGACAATAAGCCTTGTAAAGGCTGTGGGTTATGATATGGCTTACATGTTTGCATATAGCATGAGAGATAAAACCCATGCAAATAGAAACTATGATGATGATGTTCTGGAGAAAGTGAAGCAGAGGAGGCTGACTGAACTTATTGAAGCTTTCCGTGAGAGCACAGGCCAGTGTTATGACTCACAAGTGGGAACTACCCAACTTGTATTAGTAGAAGGACCTAATAAGAGAGCTCCGGATACAGAACTCATTGGCAAGAGTGACAGAGGTCATAGAGTTTCTTTCATCAATGTGCCATTACCAGATCGAGATGCTGATTCAAATGAGGAACGGAATCCCAAAGTGGGTGATTATGTTGAAGTCCGTATTCAGAAGTCTACAAGAGCGTCACTCTATGGAGAGGCAATTGCTATAAGCAAATTGAGTTCTTTTTATAACATCGTGAATGAAGAAGCTCTTGCTTGTGCAAGTAGTTGA

Protein Analysis

622

Amino Acids

70.56

Weight (kDa)

7.15

Isoelectric Point (pI)

44.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UPF0004 PF00919 113 - 225 4.4e-25 Uncharacterized protein family UPF0004
Radical_SAM PF04055 273 - 469 3.5e-27 Radical SAM superfamily
TRAM PF01938 525 - 600 4.4e-09 TRAM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014389)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G36390
fragaria_vesca FvH4_1g12320
malus_domestica MD02G1137900.v1.1 MD15G1251600.v1.1
prunus_persica Prupe.7G162800_v2.0.a1
pyrus_communis pycom02g10930 pycom15g22170
rosa_chinensis RchiOBHm_Chr2g0100141
rosa_laevigata RLG00000016940
rosa_multiflora Rmu_sc0018554.1_g000003
rosa_roxburghii Rroxscaffold_2G00142530
rosa_rugosa Rorug02G0086000
rosa_samantha Rh2AG134700 Rh2BG138400 Rh2CG140200 Rh2DG140400
rosa_wichuraiana Rw2G010530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1827
AasI GACNNNNNNGTC 1 cut(s) 656
AccBSI CCGCTC 1 cut(s) 275
AccI GTMKAC 1 cut(s) 1769
AccIII TCCGGA 2 cut(s) 125, 1627
AciI CCGC 7 cut(s) 58, 154, 250, 270, 273, 282, 337
AclWI GGATC 1 cut(s) 743
AcoI YGGCCR 1 cut(s) 615
AcsI RAATTY 2 cut(s) 799, 1118
AcuI CTGAAG 3 cut(s) 83, 339, 1035
AfaI GTAC 1 cut(s) 686
AfiI CCNNNNNNNGG 6 cut(s) 165, 307, 332, 1334, 1411, 1736
AflII CTTAAG 1 cut(s) 533
AflIII ACRYGT 1 cut(s) 1437
AgsI TTSAA 5 cut(s) 37, 804, 1538, 1713, 1751
AjiI CACGTC 1 cut(s) 893
AjnI CCWGG 2 cut(s) 264, 294
Alw21I GWGCWC 4 cut(s) 215, 851, 1556, 1627
Alw26I GTCTC 6 cut(s) 24, 344, 755, 1188, 1367, 1388
AlwI GGATC 1 cut(s) 743
AlwNI CAGNNNCTG 1 cut(s) 301
Ama87I CYCGRG 1 cut(s) 1281
Aor13HI TCCGGA 2 cut(s) 125, 1627
AoxI GGCC 9 cut(s) 238, 267, 291, 297, 334, 615, 674, 964, 1558
ApeKI GCWGC 2 cut(s) 151, 169
ApoI RAATTY 2 cut(s) 799, 1118
ArsI GACNNNNNNTTYG 4 cut(s) 166, 198, 1191, 1223
AseI ATTAAT 2 cut(s) 375, 465
AspLEI GCGC 1 cut(s) 53
AspS9I GGNCC 9 cut(s) 156, 239, 292, 298, 323, 674, 1102, 1384, 1610
AsuC2I CCSGG 2 cut(s) 1282, 1283
AsuHPI GGTGA 4 cut(s) 271, 964, 1078, 1751
AsuII TTCGAA 1 cut(s) 787
AvaI CYCGRG 1 cut(s) 1281
AvaII GGWCC 5 cut(s) 156, 323, 1102, 1384, 1610
BanII GRGCYC 2 cut(s) 215, 1627
BauI CACGAG 1 cut(s) 1301
Bbv12I GWGCWC 4 cut(s) 215, 851, 1556, 1627
BbvI GCAGC 2 cut(s) 156, 163
BccI CCATC 1 cut(s) 153
BceAI ACGGC 2 cut(s) 253, 527
BciT130I CCWGG 2 cut(s) 266, 296
BciVI GTATCC 1 cut(s) 1624
BcnI CCSGG 2 cut(s) 1282, 1283
BcoDI GTCTC 6 cut(s) 24, 344, 755, 1188, 1367, 1388
BfaI CTAG 2 cut(s) 641, 962
BfmI CTRYAG 1 cut(s) 1036
BfrI CTTAAG 1 cut(s) 533
BfuI GTATCC 1 cut(s) 1624
BglII AGATCT 1 cut(s) 1297
BisI GCNGC 5 cut(s) 152, 170, 270, 273, 337
BlsI GCNGC 5 cut(s) 153, 171, 271, 274, 338
Bme1390I CCNGG 4 cut(s) 266, 296, 1282, 1283
Bme18I GGWCC 5 cut(s) 156, 323, 1102, 1384, 1610
BmeT110I CYCGRG 1 cut(s) 1281
BmgBI CACGTC 1 cut(s) 893
BmgT120I GGNCC 9 cut(s) 156, 239, 292, 298, 323, 674, 1102, 1384, 1610
BmiI GGNNCC 2 cut(s) 190, 241
BmrFI CCNGG 4 cut(s) 266, 296, 1282, 1283
BmsI GCATC 7 cut(s) 125, 348, 634, 670, 979, 1347, 1693
BoxI GACNNNNGTC 2 cut(s) 723, 1659
BplI GAGNNNNNCTC 4 cut(s) 202, 234, 1767, 1799
BpmI CTGGAG 3 cut(s) 53, 175, 1520
Bpu14I TTCGAA 1 cut(s) 787
BpuMI CCSGG 2 cut(s) 1282, 1283
BsaBI GATNNNNATC 1 cut(s) 1144
BsaJI CCNNGG 5 cut(s) 264, 288, 294, 698, 1281
BsaWI WCCGGW 4 cut(s) 93, 112, 125, 1627
BsaXI ACNNNNNCTCC 2 cut(s) 571, 601
Bsc4I CCNNNNNNNGG 6 cut(s) 165, 307, 332, 1334, 1411, 1736
Bse1I ACTGG 4 cut(s) 548, 759, 782, 1561
Bse3DI GCAATG 1 cut(s) 559
Bse8I GATNNNNATC 1 cut(s) 1144
BseAI TCCGGA 2 cut(s) 125, 1627
BseBI CCWGG 2 cut(s) 266, 296
BseDI CCNNGG 5 cut(s) 264, 288, 294, 698, 1281
BseGI GGATG 3 cut(s) 439, 614, 1145
BseJI GATNNNNATC 1 cut(s) 1144
BseLI CCNNNNNNNGG 6 cut(s) 165, 307, 332, 1334, 1411, 1736
BseMI GCAATG 1 cut(s) 559
BseMII CTCAG 4 cut(s) 218, 432, 987, 1368
BseNI ACTGG 4 cut(s) 548, 759, 782, 1561
BseRI GAGGAG 3 cut(s) 193, 1394, 1531
BseXI GCAGC 2 cut(s) 156, 163
BseYI CCCAGC 1 cut(s) 242
BshFI GGCC 9 cut(s) 240, 269, 293, 299, 336, 617, 676, 966, 1560
BsiHKAI GWGCWC 4 cut(s) 215, 851, 1556, 1627
BsiHKCI CYCGRG 1 cut(s) 1281
BsiSI CCGG 5 cut(s) 94, 113, 126, 1282, 1628
BslFI GGGAC 2 cut(s) 497, 704
BslI CCNNNNNNNGG 6 cut(s) 165, 307, 332, 1334, 1411, 1736
BsmAI GTCTC 6 cut(s) 24, 344, 755, 1188, 1367, 1388
BsmBI CGTCTC 1 cut(s) 24
BsmFI GGGAC 2 cut(s) 497, 704
BsmI GAATGC 2 cut(s) 451, 1269
BsnI GGCC 9 cut(s) 240, 269, 293, 299, 336, 617, 676, 966, 1560
BsoBI CYCGRG 1 cut(s) 1281
Bsp119I TTCGAA 1 cut(s) 787
Bsp1286I GDGCHC 4 cut(s) 215, 851, 1556, 1627
Bsp13I TCCGGA 2 cut(s) 125, 1627
Bsp143I GATC 4 cut(s) 735, 1093, 1297, 1696
BspACI CCGC 7 cut(s) 58, 154, 250, 270, 273, 282, 337
BspANI GGCC 9 cut(s) 240, 269, 293, 299, 336, 617, 676, 966, 1560
BspCNI CTCAG 4 cut(s) 217, 433, 988, 1369
BspEI TCCGGA 2 cut(s) 125, 1627
BspHI TCATGA 1 cut(s) 346
BspLI GGNNCC 2 cut(s) 190, 241
BspPI GGATC 1 cut(s) 743
BspQI GCTCTTC 2 cut(s) 220, 542
BspT104I TTCGAA 1 cut(s) 787
BspTI CTTAAG 1 cut(s) 533
BsrBI CCGCTC 1 cut(s) 275
BsrDI GCAATG 1 cut(s) 559
BsrI ACTGG 4 cut(s) 548, 759, 782, 1561
BssECI CCNNGG 5 cut(s) 264, 288, 294, 698, 1281
BssMI GATC 4 cut(s) 735, 1093, 1297, 1696
BssSI CACGAG 1 cut(s) 1301
Bst2BI CACGAG 1 cut(s) 1301
Bst2UI CCWGG 2 cut(s) 266, 296
Bst4CI ACNGT 2 cut(s) 702, 1040
Bst6I CTCTTC 6 cut(s) 220, 225, 542, 750, 753, 1386
BstAFI CTTAAG 1 cut(s) 533
BstBI TTCGAA 1 cut(s) 787
BstC8I GCNNGC 1 cut(s) 1230
BstDEI CTNAG 5 cut(s) 204, 441, 996, 1294, 1377
BstDSI CCRYGG 1 cut(s) 698
BstENI CCTNNNNNAGG 2 cut(s) 330, 1409
BstF5I GGATG 3 cut(s) 439, 614, 1145
BstHHI GCGC 1 cut(s) 53
BstKTI GATC 4 cut(s) 738, 1096, 1300, 1699
BstMAI GTCTC 6 cut(s) 24, 344, 755, 1188, 1367, 1388
BstMBI GATC 4 cut(s) 735, 1093, 1297, 1696
BstMWI GCNNNNNNNGC 8 cut(s) 57, 73, 195, 269, 281, 290, 855, 1519
BstNI CCWGG 2 cut(s) 266, 296
BstNSI RCATGY 1 cut(s) 1441
BstPAI GACNNNNGTC 2 cut(s) 723, 1659
BstSCI CCNGG 4 cut(s) 264, 294, 1280, 1281
BstSFI CTRYAG 1 cut(s) 1036
BstV1I GCAGC 2 cut(s) 156, 163
BstX2I RGATCY 1 cut(s) 1297
BstYI RGATCY 1 cut(s) 1297
BsuI GTATCC 1 cut(s) 1624
BsuRI GGCC 9 cut(s) 240, 269, 293, 299, 336, 617, 676, 966, 1560
BtgI CCRYGG 1 cut(s) 698
BtrI CACGTC 1 cut(s) 893
BtsCI GGATG 3 cut(s) 439, 614, 1145
BtsI GCAGTG 2 cut(s) 46, 956
BtsIMutI CAGTG 7 cut(s) 46, 541, 752, 814, 956, 1045, 1568
Cac8I GCNNGC 1 cut(s) 1230
CaiI CAGNNNCTG 1 cut(s) 301
CciI TCATGA 1 cut(s) 346
CfoI GCGC 1 cut(s) 53
Cfr13I GGNCC 9 cut(s) 156, 239, 292, 298, 323, 674, 1102, 1384, 1610
Cfr9I CCCGGG 1 cut(s) 1281
CseI GACGC 2 cut(s) 1256, 1767
Csp6I GTAC 1 cut(s) 685
CviAII CATG 7 cut(s) 78, 347, 382, 1388, 1438, 1453, 1469
CviQI GTAC 1 cut(s) 685
DdeI CTNAG 5 cut(s) 204, 441, 996, 1294, 1377
DpnI GATC 4 cut(s) 737, 1095, 1299, 1698
DpnII GATC 4 cut(s) 735, 1093, 1297, 1696
DrdI GACNNNNNNGTC 1 cut(s) 656
DseDI GACNNNNNNGTC 1 cut(s) 656
EaeI YGGCCR 1 cut(s) 615
Eam1104I CTCTTC 6 cut(s) 220, 225, 542, 750, 753, 1386
EarI CTCTTC 6 cut(s) 220, 225, 542, 750, 753, 1386
EciI GGCGGA 2 cut(s) 47, 239
Ecl136II GAGCTC 2 cut(s) 213, 1625
Eco24I GRGCYC 2 cut(s) 215, 1627
Eco47I GGWCC 5 cut(s) 156, 323, 1102, 1384, 1610
Eco53kI GAGCTC 2 cut(s) 213, 1625
Eco57I CTGAAG 3 cut(s) 83, 339, 1035
Eco88I CYCGRG 1 cut(s) 1281
EcoICRI GAGCTC 2 cut(s) 213, 1625
EcoNI CCTNNNNNAGG 2 cut(s) 330, 1409
EcoO109I RGGNCCY 3 cut(s) 298, 323, 1610
EcoRII CCWGG 2 cut(s) 264, 294
EcoT38I GRGCYC 2 cut(s) 215, 1627
Esp3I CGTCTC 1 cut(s) 24
FaeI CATG 7 cut(s) 81, 350, 385, 1391, 1441, 1456, 1472
FalI AAGNNNNNCTT 2 cut(s) 1833, 1865
FaqI GGGAC 2 cut(s) 497, 704
FatI CATG 7 cut(s) 77, 346, 381, 1387, 1437, 1452, 1468
FauNDI CATATG 1 cut(s) 1355
FblI GTMKAC 1 cut(s) 1769
Fnu4HI GCNGC 5 cut(s) 152, 170, 270, 273, 337
FokI GGATG 3 cut(s) 446, 621, 1132
FriOI GRGCYC 2 cut(s) 215, 1627
Fsp4HI GCNGC 5 cut(s) 152, 170, 270, 273, 337
FspBI CTAG 2 cut(s) 641, 962
GlaI GCGC 1 cut(s) 52
GluI GCNGC 5 cut(s) 152, 170, 270, 273, 337
GsaI CCCAGC 1 cut(s) 246
GsuI CTGGAG 3 cut(s) 53, 175, 1520
HaeIII GGCC 9 cut(s) 240, 269, 293, 299, 336, 617, 676, 966, 1560
HapII CCGG 5 cut(s) 94, 113, 126, 1282, 1628
HgaI GACGC 2 cut(s) 1256, 1767
HhaI GCGC 1 cut(s) 53
Hin1II CATG 7 cut(s) 81, 350, 385, 1391, 1441, 1456, 1472
Hin6I GCGC 1 cut(s) 51
HinP1I GCGC 1 cut(s) 51
HindIII AAGCTT 3 cut(s) 120, 196, 1539
HinfI GANTC 8 cut(s) 129, 181, 789, 902, 1134, 1571, 1709, 1726
HpaII CCGG 5 cut(s) 94, 113, 126, 1282, 1628
HphI GGTGA 4 cut(s) 271, 964, 1078, 1751
Hpy166II GTNNAC 4 cut(s) 718, 890, 1082, 1770
Hpy8I GTNNAC 4 cut(s) 718, 890, 1082, 1770
Hpy99I CGWCG 3 cut(s) 239, 263, 1272
HpyAV CCTTC 6 cut(s) 314, 400, 493, 932, 1037, 1601
HpyCH4III ACNGT 2 cut(s) 702, 1040
HpyCH4IV ACGT 2 cut(s) 892, 1084
HpyF10VI GCNNNNNNNGC 8 cut(s) 57, 73, 195, 269, 281, 290, 855, 1519
HpyF3I CTNAG 5 cut(s) 204, 441, 996, 1294, 1377
HpySE526I ACGT 2 cut(s) 892, 1084
Hsp92II CATG 7 cut(s) 81, 350, 385, 1391, 1441, 1456, 1472
HspAI GCGC 1 cut(s) 51
Kpn2I TCCGGA 2 cut(s) 125, 1627
Kzo9I GATC 4 cut(s) 735, 1093, 1297, 1696
LguI GCTCTTC 2 cut(s) 220, 542
LmnI GCTCC 4 cut(s) 72, 194, 319, 1630
Lsp1109I GCAGC 2 cut(s) 156, 163
LweI GCATC 7 cut(s) 125, 348, 634, 670, 979, 1347, 1693
MaeI CTAG 2 cut(s) 641, 962
MaeII ACGT 2 cut(s) 892, 1084
MaeIII GTNAC 5 cut(s) 702, 952, 1176, 1652, 1779
MalI GATC 4 cut(s) 737, 1095, 1299, 1698
MbiI CCGCTC 1 cut(s) 275
MboI GATC 4 cut(s) 735, 1093, 1297, 1696
MboII GAAGA 8 cut(s) 128, 207, 212, 559, 737, 770, 1403, 1853
MfeI CAATTG 2 cut(s) 906, 1797
MflI RGATCY 1 cut(s) 1297
MhlI GDGCHC 4 cut(s) 215, 851, 1556, 1627
MluCI AATT 8 cut(s) 103, 517, 799, 906, 1027, 1118, 1797, 1811
MlyI GAGTC 3 cut(s) 190, 911, 1565
MmeI TCCRAC 1 cut(s) 258
MroI TCCGGA 2 cut(s) 125, 1627
MseI TTAA 6 cut(s) 375, 465, 516, 534, 558, 626
MslI CAYNNNNRTG 1 cut(s) 1682
MspA1I CMGCKG 1 cut(s) 154
MspCI CTTAAG 1 cut(s) 533
MspI CCGG 5 cut(s) 94, 113, 126, 1282, 1628
MspR9I CCNGG 4 cut(s) 266, 296, 1282, 1283
MunI CAATTG 2 cut(s) 906, 1797
Mva1269I GAATGC 2 cut(s) 451, 1269
MvaI CCWGG 2 cut(s) 266, 296
MwoI GCNNNNNNNGC 8 cut(s) 57, 73, 195, 269, 281, 290, 855, 1519
NciI CCSGG 2 cut(s) 1282, 1283
NdeI CATATG 1 cut(s) 1355
NdeII GATC 4 cut(s) 735, 1093, 1297, 1696
NlaIII CATG 7 cut(s) 81, 350, 385, 1391, 1441, 1456, 1472
NlaIV GGNNCC 2 cut(s) 190, 241
NmeAIII GCCGAG 2 cut(s) 145, 643
NmuCI GTSAC 3 cut(s) 952, 1652, 1779
NspI RCATGY 1 cut(s) 1441
NspV TTCGAA 1 cut(s) 787
PagI TCATGA 1 cut(s) 346
PciI ACATGT 1 cut(s) 1437
PciSI GCTCTTC 2 cut(s) 220, 542
PctI GAATGC 2 cut(s) 451, 1269
PfeI GAWTC 5 cut(s) 129, 789, 1134, 1709, 1726
PkrI GCNGC 5 cut(s) 153, 171, 271, 274, 338
PleI GAGTC 3 cut(s) 189, 910, 1565
PpsI GAGTC 3 cut(s) 189, 910, 1565
PpuMI RGGWCCY 2 cut(s) 323, 1610
PscI ACATGT 1 cut(s) 1437
PshAI GACNNNNGTC 2 cut(s) 723, 1659
PshBI ATTAAT 2 cut(s) 375, 465
PsiI TTATAA 1 cut(s) 1827
Psp124BI GAGCTC 2 cut(s) 215, 1627
Psp5II RGGWCCY 2 cut(s) 323, 1610
Psp6I CCWGG 2 cut(s) 264, 294
PspFI CCCAGC 1 cut(s) 242
PspGI CCWGG 2 cut(s) 264, 294
PspN4I GGNNCC 2 cut(s) 190, 241
PspPI GGNCC 9 cut(s) 156, 239, 292, 298, 323, 674, 1102, 1384, 1610
PspPPI RGGWCCY 2 cut(s) 323, 1610
PstNI CAGNNNCTG 1 cut(s) 301
PsuI RGATCY 1 cut(s) 1297
RsaI GTAC 1 cut(s) 686
RsaNI GTAC 1 cut(s) 685
RseI CAYNNNNRTG 1 cut(s) 1682
SacI GAGCTC 2 cut(s) 215, 1627
SapI GCTCTTC 2 cut(s) 220, 542
SaqAI TTAA 6 cut(s) 375, 465, 516, 534, 558, 626
SatI GCNGC 5 cut(s) 152, 170, 270, 273, 337
Sau3AI GATC 4 cut(s) 735, 1093, 1297, 1696
Sau96I GGNCC 9 cut(s) 156, 239, 292, 298, 323, 674, 1102, 1384, 1610
SchI GAGTC 3 cut(s) 190, 911, 1565
ScrFI CCNGG 4 cut(s) 266, 296, 1282, 1283
SduI GDGCHC 4 cut(s) 215, 851, 1556, 1627
SfaNI GCATC 7 cut(s) 125, 348, 634, 670, 979, 1347, 1693
SfcI CTRYAG 1 cut(s) 1036
SfuI TTCGAA 1 cut(s) 787
SinI GGWCC 5 cut(s) 156, 323, 1102, 1384, 1610
SmaI CCCGGG 1 cut(s) 1283
SmiMI CAYNNNNRTG 1 cut(s) 1682
SmlI CTYRAG 1 cut(s) 533
SmoI CTYRAG 1 cut(s) 533
Sse9I AATT 8 cut(s) 103, 517, 799, 906, 1027, 1118, 1797, 1811
SsiI CCGC 7 cut(s) 58, 154, 250, 270, 273, 282, 337
SspI AATATT 2 cut(s) 373, 1207
SspMI CTAG 2 cut(s) 641, 962
SstI GAGCTC 2 cut(s) 215, 1627
StyD4I CCNGG 4 cut(s) 264, 294, 1280, 1281
TaaI ACNGT 2 cut(s) 702, 1040
TaiI ACGT 2 cut(s) 895, 1087
TaqI TCGA 5 cut(s) 29, 209, 660, 787, 1699
TaqII GACCGA 1 cut(s) 1119
TasI AATT 8 cut(s) 103, 517, 799, 906, 1027, 1118, 1797, 1811
TauI GCSGC 3 cut(s) 272, 275, 339
TfiI GAWTC 5 cut(s) 129, 789, 1134, 1709, 1726
Tru1I TTAA 6 cut(s) 375, 465, 516, 534, 558, 626
Tru9I TTAA 6 cut(s) 375, 465, 516, 534, 558, 626
TscAI CASTG 7 cut(s) 53, 548, 759, 814, 963, 1045, 1568
TseFI GTSAC 3 cut(s) 952, 1652, 1779
TseI GCWGC 2 cut(s) 151, 169
Tsp45I GTSAC 3 cut(s) 952, 1652, 1779
TspDTI ATGAA 8 cut(s) 383, 419, 451, 1017, 1342, 1404, 1666, 1854
TspGWI ACGGA 3 cut(s) 1535, 1738, 1745
TspMI CCCGGG 1 cut(s) 1281
TspRI CASTG 7 cut(s) 53, 548, 759, 814, 963, 1045, 1568
Vha464I CTTAAG 1 cut(s) 533
VpaK11BI GGWCC 5 cut(s) 156, 323, 1102, 1384, 1610
VspI ATTAAT 2 cut(s) 375, 465
XagI CCTNNNNNAGG 2 cut(s) 330, 1409
XapI RAATTY 2 cut(s) 799, 1118
XceI RCATGY 1 cut(s) 1441
XmaI CCCGGG 1 cut(s) 1281
XmiI GTMKAC 1 cut(s) 1769
XspI CTAG 2 cut(s) 641, 962
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.