Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0014389

Physical Location & Seq

Genomic Coordinates Forward (+)

6868291 .. 6868914

Gene Structure 624 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0086000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGATGGGATTCGACGTCGAAAAGTTGCTTCCAGGCCACCGAAAGATAGTTGGGAAGAGCAACTCTACTTGTCTGTAGGCAAAGAGTTATGGGAGAAACTGACCGACTCCAATAACAAGTGCATATATCTCTACCAAAACGTTGCCCGGTGGAACGACTCTGCGGCCAAAGAGGCCTTCGAAAATGAGAAAACCCGGTTCTTGGCAAAGATCAAGGAGGTTCCCTGCAACGTGCCGTCGCCAGATCCCGACGCTTATATTGATGAAATAGATTGGAGCGACTTCGGCAACCCGGAACTGGTTTGGGACGAGGAAGAAAGTAATGAATGGAGAAGTGAAGGTGAGTTTATTCTTGAGGGTTTTGAGGTTCTTGATCCTTCGTTTTGCGTAGGATGGGGGCCGGAGACGTGGTACGAGGCAAAGAAGGAAGAGGAGGTGAAGAAAGATACTGACGAAGAAAAGGCTTGGGAAGCTTATTGGGAGGTAGACCTAGCGGCGGCGGTAGGAGGAGGACGAGGCAACAGTGATGGAAAGAAGTGGTATAACTCATCATCAAGACGTTGTACCCCGAGAAATGGCGGTGGTTATCGATTGGGCAGAGGAATTTGTATAGGGAGAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0001932 GO:0008150 GO:0019220 GO:0019222 GO:0031323 GO:0031399 GO:0032268 GO:0042325 GO:0043549 GO:0045859 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051174 GO:0051246 GO:0051338 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071900 GO:0080090 GO:1904029

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Radical_SAM TRAM UPF0004

Protein Analysis

207

Amino Acids

23.91

Weight (kDa)

4.78

Isoelectric Point (pI)

48.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014389)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36390
fragaria_vesca	FvH4_1g12320
malus_domestica	MD02G1137900.v1.1 MD15G1251600.v1.1
prunus_persica	Prupe.7G162800_v2.0.a1
pyrus_communis	pycom02g10930 pycom15g22170
rosa_chinensis	RchiOBHm_Chr2g0100141
rosa_laevigata	RLG00000016940
rosa_multiflora	Rmu_sc0018554.1_g000003
rosa_roxburghii	Rroxscaffold_2G00142530
rosa_rugosa	Rorug02G0086000
rosa_samantha	Rh2AG134700 Rh2BG138400 Rh2CG140200 Rh2DG140400
rosa_wichuraiana	Rw2G010530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	19
AccI	GTMKAC	1 cut(s)	486
AciI	CCGC	5 cut(s)	164, 494, 497, 500, 579
AclI	AACGTT	1 cut(s)	141
AclWI	GGATC	2 cut(s)	239, 368
AcoI	YGGCCR	1 cut(s)	165
AcsI	RAATTY	1 cut(s)	603
AcyI	GRCGYC	1 cut(s)	16
AfaI	GTAC	2 cut(s)	413, 565
AfiI	CCNNNNNNNGG	4 cut(s)	202, 298, 496, 575
AjiI	CACGTC	1 cut(s)	408
AjnI	CCWGG	1 cut(s)	32
AjuI	GAANNNNNNNTTGG	2 cut(s)	161, 193
AluBI	AGCT	1 cut(s)	473
AluI	AGCT	1 cut(s)	473
Alw26I	GTCTC	1 cut(s)	398
AlwI	GGATC	2 cut(s)	239, 368
Ama87I	CYCGRG	1 cut(s)	568
AoxI	GGCC	4 cut(s)	35, 165, 174, 398
ApoI	RAATTY	1 cut(s)	603
AspS9I	GGNCC	1 cut(s)	398
AsuC2I	CCSGG	3 cut(s)	148, 196, 293
AsuHPI	GGTGA	2 cut(s)	353, 448
AsuII	TTCGAA	1 cut(s)	180
AvaI	CYCGRG	1 cut(s)	568
BccI	CCATC	2 cut(s)	387, 521
BceAI	ACGGC	1 cut(s)	220
BciT130I	CCWGG	1 cut(s)	34
BcnI	CCSGG	3 cut(s)	148, 196, 293
BcoDI	GTCTC	1 cut(s)	398
BfaI	CTAG	1 cut(s)	491
BfmI	CTRYAG	1 cut(s)	75
BglI	GCCNNNNNGGC	1 cut(s)	173
BisI	GCNGC	3 cut(s)	165, 495, 498
BlsI	GCNGC	3 cut(s)	166, 496, 499
Bme1390I	CCNGG	4 cut(s)	34, 148, 196, 293
BmeT110I	CYCGRG	1 cut(s)	568
BmgBI	CACGTC	1 cut(s)	408
BmgT120I	GGNCC	1 cut(s)	398
BmiI	GGNNCC	2 cut(s)	222, 399
BmrFI	CCNGG	4 cut(s)	34, 148, 196, 293
Bpu14I	TTCGAA	1 cut(s)	180
BpuEI	CTTGAG	1 cut(s)	374
BpuMI	CCSGG	3 cut(s)	148, 196, 293
Bsa29I	ATCGAT	1 cut(s)	589
BsaHI	GRCGYC	1 cut(s)	16
BsaXI	ACNNNNNCTCC	2 cut(s)	395, 425
Bsc4I	CCNNNNNNNGG	4 cut(s)	202, 298, 496, 575
Bse1I	ACTGG	1 cut(s)	303
BseBI	CCWGG	1 cut(s)	34
BseCI	ATCGAT	1 cut(s)	589
BseGI	GGATG	2 cut(s)	10, 398
BseLI	CCNNNNNNNGG	4 cut(s)	202, 298, 496, 575
BseNI	ACTGG	1 cut(s)	303
BseRI	GAGGAG	2 cut(s)	446, 522
BshFI	GGCC	4 cut(s)	37, 167, 176, 400
BshVI	ATCGAT	1 cut(s)	589
BsiHKCI	CYCGRG	1 cut(s)	568
BsiSI	CCGG	4 cut(s)	148, 196, 293, 401
BslFI	GGGAC	1 cut(s)	320
BslI	CCNNNNNNNGG	4 cut(s)	202, 298, 496, 575
BsmAI	GTCTC	1 cut(s)	398
BsmBI	CGTCTC	1 cut(s)	398
BsmFI	GGGAC	1 cut(s)	320
BsnI	GGCC	4 cut(s)	37, 167, 176, 400
BsoBI	CYCGRG	1 cut(s)	568
Bsp119I	TTCGAA	1 cut(s)	180
Bsp143I	GATC	3 cut(s)	210, 244, 373
BspACI	CCGC	5 cut(s)	164, 494, 497, 500, 579
BspANI	GGCC	4 cut(s)	37, 167, 176, 400
BspDI	ATCGAT	1 cut(s)	589
BspLI	GGNNCC	2 cut(s)	222, 399
BspPI	GGATC	2 cut(s)	239, 368
BspQI	GCTCTTC	1 cut(s)	51
BspT104I	TTCGAA	1 cut(s)	180
BsrI	ACTGG	1 cut(s)	303
BssMI	GATC	3 cut(s)	210, 244, 373
BssNI	GRCGYC	1 cut(s)	16
Bst2UI	CCWGG	1 cut(s)	34
Bst4CI	ACNGT	1 cut(s)	524
Bst6I	CTCTTC	2 cut(s)	51, 423
BstACI	GRCGYC	1 cut(s)	16
BstBI	TTCGAA	1 cut(s)	180
BstF5I	GGATG	2 cut(s)	10, 398
BstKTI	GATC	3 cut(s)	213, 247, 376
BstMAI	GTCTC	1 cut(s)	398
BstMBI	GATC	3 cut(s)	210, 244, 373
BstMWI	GCNNNNNNNGC	3 cut(s)	173, 285, 470
BstNI	CCWGG	1 cut(s)	34
BstSCI	CCNGG	4 cut(s)	32, 146, 194, 291
BstSFI	CTRYAG	1 cut(s)	75
BstX2I	RGATCY	1 cut(s)	244
BstYI	RGATCY	1 cut(s)	244
Bsu15I	ATCGAT	1 cut(s)	589
BsuRI	GGCC	4 cut(s)	37, 167, 176, 400
BsuTUI	ATCGAT	1 cut(s)	589
BtrI	CACGTC	1 cut(s)	408
BtsCI	GGATG	2 cut(s)	10, 398
BtsIMutI	CAGTG	1 cut(s)	529
Cfr13I	GGNCC	1 cut(s)	398
ClaI	ATCGAT	1 cut(s)	589
CseI	GACGC	1 cut(s)	260
Csp6I	GTAC	2 cut(s)	412, 564
CviJI	RGCY	6 cut(s)	37, 167, 176, 400, 464, 473
CviKI_1	RGCY	6 cut(s)	37, 167, 176, 400, 464, 473
CviQI	GTAC	2 cut(s)	412, 564
DpnI	GATC	3 cut(s)	212, 246, 375
DpnII	GATC	3 cut(s)	210, 244, 373
EaeI	YGGCCR	1 cut(s)	165
Eam1104I	CTCTTC	2 cut(s)	51, 423
EarI	CTCTTC	2 cut(s)	51, 423
Eco147I	AGGCCT	1 cut(s)	176
Eco88I	CYCGRG	1 cut(s)	568
EcoRII	CCWGG	1 cut(s)	32
Esp3I	CGTCTC	1 cut(s)	398
FaiI	YATR	6 cut(s)	91, 125, 127, 258, 543, 611
FaqI	GGGAC	1 cut(s)	320
FblI	GTMKAC	1 cut(s)	486
Fnu4HI	GCNGC	3 cut(s)	165, 495, 498
FokI	GGATG	2 cut(s)	17, 405
Fsp4HI	GCNGC	3 cut(s)	165, 495, 498
FspBI	CTAG	1 cut(s)	491
GluI	GCNGC	3 cut(s)	165, 495, 498
HaeIII	GGCC	4 cut(s)	37, 167, 176, 400
HapII	CCGG	4 cut(s)	148, 196, 293, 401
HgaI	GACGC	1 cut(s)	260
Hin1I	GRCGYC	1 cut(s)	16
HindIII	AAGCTT	1 cut(s)	471
HinfI	GANTC	3 cut(s)	10, 107, 158
HpaII	CCGG	4 cut(s)	148, 196, 293, 401
HphI	GGTGA	2 cut(s)	353, 448
Hpy166II	GTNNAC	1 cut(s)	487
Hpy188III	TCNNGA	4 cut(s)	248, 353, 371, 555
Hpy8I	GTNNAC	1 cut(s)	487
Hpy99I	CGWCG	4 cut(s)	18, 21, 241, 254
HpyAV	CCTTC	4 cut(s)	187, 332, 387, 418
HpyCH4III	ACNGT	1 cut(s)	524
HpyCH4IV	ACGT	5 cut(s)	16, 141, 231, 407, 559
HpyCH4V	TGCA	2 cut(s)	123, 228
HpyF10VI	GCNNNNNNNGC	3 cut(s)	173, 285, 470
HpySE526I	ACGT	5 cut(s)	16, 141, 231, 407, 559
Hsp92I	GRCGYC	1 cut(s)	16
Kzo9I	GATC	3 cut(s)	210, 244, 373
LguI	GCTCTTC	1 cut(s)	51
LmnI	GCTCC	1 cut(s)	276
LpnPI	CCDG	9 cut(s)	19, 46, 161, 209, 238, 255, 284, 306, 414
MaeI	CTAG	1 cut(s)	491
MaeII	ACGT	5 cut(s)	16, 141, 231, 407, 559
MalI	GATC	3 cut(s)	212, 246, 375
MboI	GATC	3 cut(s)	210, 244, 373
MboII	GAAGA	5 cut(s)	68, 326, 440, 451, 467
MflI	RGATCY	1 cut(s)	244
MluCI	AATT	1 cut(s)	603
MlyI	GAGTC	2 cut(s)	101, 152
MspI	CCGG	4 cut(s)	148, 196, 293, 401
MspR9I	CCNGG	4 cut(s)	34, 148, 196, 293
MvaI	CCWGG	1 cut(s)	34
MwoI	GCNNNNNNNGC	3 cut(s)	173, 285, 470
NciI	CCSGG	3 cut(s)	148, 196, 293
NdeII	GATC	3 cut(s)	210, 244, 373
NlaIV	GGNNCC	2 cut(s)	222, 399
NspV	TTCGAA	1 cut(s)	180
PceI	AGGCCT	1 cut(s)	176
PciSI	GCTCTTC	1 cut(s)	51
PfeI	GAWTC	1 cut(s)	10
PkrI	GCNGC	3 cut(s)	166, 496, 499
PleI	GAGTC	2 cut(s)	101, 152
PpsI	GAGTC	2 cut(s)	101, 152
Psp1406I	AACGTT	1 cut(s)	141
Psp6I	CCWGG	1 cut(s)	32
PspGI	CCWGG	1 cut(s)	32
PspN4I	GGNNCC	2 cut(s)	222, 399
PspPI	GGNCC	1 cut(s)	398
PsuI	RGATCY	1 cut(s)	244
RsaI	GTAC	2 cut(s)	413, 565
RsaNI	GTAC	2 cut(s)	412, 564
SapI	GCTCTTC	1 cut(s)	51
SatI	GCNGC	3 cut(s)	165, 495, 498
Sau3AI	GATC	3 cut(s)	210, 244, 373
Sau96I	GGNCC	1 cut(s)	398
SchI	GAGTC	2 cut(s)	101, 152
ScrFI	CCNGG	4 cut(s)	34, 148, 196, 293
SfcI	CTRYAG	1 cut(s)	75
SfiI	GGCCNNNNNGGCC	1 cut(s)	173
SfuI	TTCGAA	1 cut(s)	180
SmlI	CTYRAG	1 cut(s)	353
SmoI	CTYRAG	1 cut(s)	353
Sse9I	AATT	1 cut(s)	603
SseBI	AGGCCT	1 cut(s)	176
SsiI	CCGC	5 cut(s)	164, 494, 497, 500, 579
SspMI	CTAG	1 cut(s)	491
StuI	AGGCCT	1 cut(s)	176
StyD4I	CCNGG	4 cut(s)	32, 146, 194, 291
TaaI	ACNGT	1 cut(s)	524
TaiI	ACGT	5 cut(s)	19, 144, 234, 410, 562
TaqI	TCGA	4 cut(s)	13, 19, 180, 589
TaqII	GACCGA	1 cut(s)	119
TasI	AATT	1 cut(s)	603
TauI	GCSGC	3 cut(s)	167, 497, 500
TfiI	GAWTC	1 cut(s)	10
TscAI	CASTG	1 cut(s)	529
TspDTI	ATGAA	2 cut(s)	279, 339
TspRI	CASTG	1 cut(s)	529
XapI	RAATTY	1 cut(s)	603
XmiI	GTMKAC	1 cut(s)	486
XspI	CTAG	1 cut(s)	491
ZraI	GACGTC	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.