FvH4_1g12370

RTE1-HOMOLOG-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0005598
Physical Location & Seq
Reverse (-)
6786184 .. 6788434
2251 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g12370.t5

Sequence Viewer

Length: 684 bp
ATGGAAGCAAATGGAGACTCTGAGCACCACATGATGATTGAAGGAAGTGCTTCACCGACTTTGCAAATTGACCCTAAAAGAGCTCGGTTTCCAAGCTGCATTGTGTGGACACCGCTTCCTGTTATATCATGGCTGGTTCCTTTTGTTGGCCATATTGGCATATGCAGAGAAGATGGCGTGATTTTGGACTTTGCAGGACCCAATTTTGTGTCTGTGGATGACTTTGCTTTTGGAGCACCAACTCGCTACATCCAAATAAGCAAAGAAAAGTGTTGTGCTATTCCCTGTCCATCTGAGCATGAAGCAGTGTTGCATGATGATCCTGGAAGAGACATATTGACATGGGATGATGCACTTCATAAGGGCACTCAAGAATTCCAACACCGGGCTTATAACCTTTTTACCTGCAATTGCCACTCCTTTGTAGCCAACAGCCTTAACAGGTTAGGCTTTCGTTCTGGTGGGTGGAATGTGGTGAACCTCGCAGCTCTCATCTTCCTTAAGGGTGACTGGGTAAGTGTAAGATCCATGGTGCGGACTTTTTTGCCGTTCTTAATAACATTCAGTTTTGGACTTGCAATAGGAGGTACAATCTTCCTAACTTACTTAGGATTCTTCATCGCCTTCCTTGTTGGCTGGTTTCTTCTTGGTACTTACTGTTTCAAGAACTTGATCCAGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 map04016
Pfam Domains
Protein Families
DUF778

Protein Analysis

228

Amino Acids

25.4

Weight (kDa)

6.03

Isoelectric Point (pI)

34.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RTE1 PF05608 52 - 197 6.7e-67 RTE1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 393
Acc36I ACCTGC 1 cut(s) 413
AciI CCGC 2 cut(s) 113, 535
AclWI GGATC 3 cut(s) 314, 519, 667
AcoI YGGCCR 1 cut(s) 148
AcsI RAATTY 1 cut(s) 374
AfaI GTAC 2 cut(s) 589, 652
AfiI CCNNNNNNNGG 3 cut(s) 146, 385, 534
AflII CTTAAG 1 cut(s) 500
AgsI TTSAA 2 cut(s) 41, 664
AjnI CCWGG 1 cut(s) 322
AluBI AGCT 3 cut(s) 83, 96, 488
AluI AGCT 3 cut(s) 83, 96, 488
Alw21I GWGCWC 3 cut(s) 27, 85, 238
Alw26I GTCTC 2 cut(s) 9, 324
AlwI GGATC 3 cut(s) 314, 519, 667
AoxI GGCC 1 cut(s) 148
ApeKI GCWGC 2 cut(s) 96, 485
ApoI RAATTY 1 cut(s) 374
ArsI GACNNNNNNTTYG 2 cut(s) 212, 244
Asp700I GAANNNNTTC 1 cut(s) 49
AspS9I GGNCC 1 cut(s) 197
AsuC2I CCSGG 1 cut(s) 386
AsuHPI GGTGA 3 cut(s) 45, 487, 518
AvaII GGWCC 1 cut(s) 197
BaeGI GKGCMC 1 cut(s) 368
BalI TGGCCA 1 cut(s) 150
BanII GRGCYC 1 cut(s) 85
Bbv12I GWGCWC 3 cut(s) 27, 85, 238
BbvI GCAGC 2 cut(s) 83, 497
BccI CCATC 2 cut(s) 167, 298
BceAI ACGGC 1 cut(s) 532
BciT130I CCWGG 1 cut(s) 324
BcnI CCSGG 1 cut(s) 386
BcoDI GTCTC 2 cut(s) 9, 324
BfrI CTTAAG 1 cut(s) 500
BfuAI ACCTGC 1 cut(s) 413
BglI GCCNNNNNGGC 1 cut(s) 156
BisI GCNGC 2 cut(s) 97, 486
BlsI GCNGC 2 cut(s) 98, 487
Bme1390I CCNGG 2 cut(s) 324, 386
Bme18I GGWCC 1 cut(s) 197
BmgT120I GGNCC 1 cut(s) 197
BmiI GGNNCC 2 cut(s) 138, 199
BmrFI CCNGG 2 cut(s) 324, 386
BmrI ACTGGG 1 cut(s) 520
BmsI GCATC 1 cut(s) 340
BmuI ACTGGG 1 cut(s) 520
BpuEI CTTGAG 1 cut(s) 354
BpuMI CCSGG 1 cut(s) 386
BsaJI CCNNGG 1 cut(s) 528
Bsc4I CCNNNNNNNGG 3 cut(s) 146, 385, 534
Bse1I ACTGG 2 cut(s) 515, 676
BseBI CCWGG 1 cut(s) 324
BseDI CCNNGG 1 cut(s) 528
BseGI GGATG 3 cut(s) 223, 249, 352
BseLI CCNNNNNNNGG 3 cut(s) 146, 385, 534
BseMII CTCAG 2 cut(s) 12, 285
BseNI ACTGG 2 cut(s) 515, 676
BseSI GKGCMC 1 cut(s) 368
BseXI GCAGC 2 cut(s) 83, 497
BshFI GGCC 1 cut(s) 150
BsiHKAI GWGCWC 3 cut(s) 27, 85, 238
BsiSI CCGG 1 cut(s) 385
BslI CCNNNNNNNGG 3 cut(s) 146, 385, 534
BsmAI GTCTC 2 cut(s) 9, 324
BsnI GGCC 1 cut(s) 150
Bsp1286I GDGCHC 4 cut(s) 27, 85, 238, 368
Bsp143I GATC 3 cut(s) 319, 524, 672
Bsp19I CCATGG 1 cut(s) 528
BspACI CCGC 2 cut(s) 113, 535
BspANI GGCC 1 cut(s) 150
BspCNI CTCAG 2 cut(s) 13, 286
BspLI GGNNCC 2 cut(s) 138, 199
BspMI ACCTGC 1 cut(s) 413
BspPI GGATC 3 cut(s) 314, 519, 667
BspTI CTTAAG 1 cut(s) 500
BsrI ACTGG 2 cut(s) 515, 676
BssECI CCNNGG 1 cut(s) 528
BssMI GATC 3 cut(s) 319, 524, 672
BssT1I CCWWGG 1 cut(s) 528
Bst2UI CCWGG 1 cut(s) 324
Bst4CI ACNGT 1 cut(s) 659
Bst6I CTCTTC 1 cut(s) 322
BstAFI CTTAAG 1 cut(s) 500
BstDEI CTNAG 3 cut(s) 21, 294, 607
BstDSI CCRYGG 1 cut(s) 528
BstF5I GGATG 3 cut(s) 223, 249, 352
BstKTI GATC 3 cut(s) 322, 527, 675
BstMAI GTCTC 2 cut(s) 9, 324
BstMBI GATC 3 cut(s) 319, 524, 672
BstMWI GCNNNNNNNGC 2 cut(s) 156, 233
BstNI CCWGG 1 cut(s) 324
BstSCI CCNGG 2 cut(s) 322, 384
BstSLI GKGCMC 1 cut(s) 368
BstV1I GCAGC 2 cut(s) 83, 497
BstX2I RGATCY 1 cut(s) 524
BstYI RGATCY 1 cut(s) 524
BsuRI GGCC 1 cut(s) 150
BtgI CCRYGG 1 cut(s) 528
BtgZI GCGATG 1 cut(s) 604
BtsCI GGATG 3 cut(s) 223, 249, 352
BtsI GCAGTG 1 cut(s) 312
BtsIMutI CAGTG 1 cut(s) 312
BveI ACCTGC 1 cut(s) 413
Cfr13I GGNCC 1 cut(s) 197
Csp6I GTAC 2 cut(s) 588, 651
CviAII CATG 6 cut(s) 31, 129, 299, 314, 342, 529
CviQI GTAC 2 cut(s) 588, 651
DdeI CTNAG 3 cut(s) 21, 294, 607
DpnI GATC 3 cut(s) 321, 526, 674
DpnII GATC 3 cut(s) 319, 524, 672
EaeI YGGCCR 1 cut(s) 148
Eam1104I CTCTTC 1 cut(s) 322
EarI CTCTTC 1 cut(s) 322
Ecl136II GAGCTC 1 cut(s) 83
Eco130I CCWWGG 1 cut(s) 528
Eco24I GRGCYC 1 cut(s) 85
Eco47I GGWCC 1 cut(s) 197
Eco53kI GAGCTC 1 cut(s) 83
EcoICRI GAGCTC 1 cut(s) 83
EcoO109I RGGNCCY 1 cut(s) 197
EcoRI GAATTC 1 cut(s) 374
EcoRII CCWGG 1 cut(s) 322
EcoT14I CCWWGG 1 cut(s) 528
EcoT38I GRGCYC 1 cut(s) 85
ErhI CCWWGG 1 cut(s) 528
FaeI CATG 6 cut(s) 34, 132, 302, 317, 345, 532
FatI CATG 6 cut(s) 30, 128, 298, 313, 341, 528
FauNDI CATATG 1 cut(s) 161
Fnu4HI GCNGC 2 cut(s) 97, 486
FokI GGATG 3 cut(s) 230, 236, 359
FriOI GRGCYC 1 cut(s) 85
Fsp4HI GCNGC 2 cut(s) 97, 486
GluI GCNGC 2 cut(s) 97, 486
HaeIII GGCC 1 cut(s) 150
HapII CCGG 1 cut(s) 385
Hin1II CATG 6 cut(s) 34, 132, 302, 317, 345, 532
HinfI GANTC 2 cut(s) 17, 612
HpaII CCGG 1 cut(s) 385
HphI GGTGA 3 cut(s) 45, 487, 518
Hpy166II GTNNAC 2 cut(s) 108, 478
Hpy188I TCNGA 2 cut(s) 22, 295
Hpy188III TCNNGA 2 cut(s) 371, 664
Hpy8I GTNNAC 2 cut(s) 108, 478
HpyAV CCTTC 2 cut(s) 35, 634
HpyCH4III ACNGT 1 cut(s) 659
HpyCH4V TGCA 8 cut(s) 64, 99, 165, 194, 313, 353, 408, 578
HpyF10VI GCNNNNNNNGC 2 cut(s) 156, 233
HpyF3I CTNAG 3 cut(s) 21, 294, 607
Hsp92II CATG 6 cut(s) 34, 132, 302, 317, 345, 532
Kzo9I GATC 3 cut(s) 319, 524, 672
LmnI GCTCC 1 cut(s) 233
Lsp1109I GCAGC 2 cut(s) 83, 497
LweI GCATC 1 cut(s) 340
MaeIII GTNAC 1 cut(s) 506
MalI GATC 3 cut(s) 321, 526, 674
MboI GATC 3 cut(s) 319, 524, 672
MboII GAAGA 6 cut(s) 182, 339, 487, 586, 607, 635
MfeI CAATTG 1 cut(s) 409
MflI RGATCY 1 cut(s) 524
MhlI GDGCHC 4 cut(s) 27, 85, 238, 368
MlsI TGGCCA 1 cut(s) 150
MluCI AATT 4 cut(s) 66, 202, 374, 409
MluNI TGGCCA 1 cut(s) 150
MlyI GAGTC 1 cut(s) 11
MmeI TCCRAC 1 cut(s) 403
MnlI CCTC 2 cut(s) 491, 578
Mox20I TGGCCA 1 cut(s) 150
MroXI GAANNNNTTC 1 cut(s) 49
MscI TGGCCA 1 cut(s) 150
MseI TTAA 3 cut(s) 438, 501, 554
Msp20I TGGCCA 1 cut(s) 150
MspCI CTTAAG 1 cut(s) 500
MspI CCGG 1 cut(s) 385
MspR9I CCNGG 2 cut(s) 324, 386
MunI CAATTG 1 cut(s) 409
MvaI CCWGG 1 cut(s) 324
MwoI GCNNNNNNNGC 2 cut(s) 156, 233
NciI CCSGG 1 cut(s) 386
NcoI CCATGG 1 cut(s) 528
NdeI CATATG 1 cut(s) 161
NdeII GATC 3 cut(s) 319, 524, 672
NlaIII CATG 6 cut(s) 34, 132, 302, 317, 345, 532
NlaIV GGNNCC 2 cut(s) 138, 199
NmuCI GTSAC 1 cut(s) 506
PdmI GAANNNNTTC 1 cut(s) 49
PfeI GAWTC 1 cut(s) 612
PfoI TCCNGGA 1 cut(s) 322
PkrI GCNGC 2 cut(s) 98, 487
PleI GAGTC 1 cut(s) 11
PpsI GAGTC 1 cut(s) 11
PpuMI RGGWCCY 1 cut(s) 197
PsiI TTATAA 1 cut(s) 393
Psp124BI GAGCTC 1 cut(s) 85
Psp5II RGGWCCY 1 cut(s) 197
Psp6I CCWGG 1 cut(s) 322
PspGI CCWGG 1 cut(s) 322
PspN4I GGNNCC 2 cut(s) 138, 199
PspPI GGNCC 1 cut(s) 197
PspPPI RGGWCCY 1 cut(s) 197
PsuI RGATCY 1 cut(s) 524
RsaI GTAC 2 cut(s) 589, 652
RsaNI GTAC 2 cut(s) 588, 651
SacI GAGCTC 1 cut(s) 85
SaqAI TTAA 3 cut(s) 438, 501, 554
SatI GCNGC 2 cut(s) 97, 486
Sau3AI GATC 3 cut(s) 319, 524, 672
Sau96I GGNCC 1 cut(s) 197
SchI GAGTC 1 cut(s) 11
ScrFI CCNGG 2 cut(s) 324, 386
SduI GDGCHC 4 cut(s) 27, 85, 238, 368
SetI ASST 8 cut(s) 85, 98, 399, 407, 446, 483, 490, 589
SfaNI GCATC 1 cut(s) 340
SinI GGWCC 1 cut(s) 197
SmlI CTYRAG 2 cut(s) 369, 500
SmoI CTYRAG 2 cut(s) 369, 500
Sse9I AATT 4 cut(s) 66, 202, 374, 409
SsiI CCGC 2 cut(s) 113, 535
SstI GAGCTC 1 cut(s) 85
StyD4I CCNGG 2 cut(s) 322, 384
StyI CCWWGG 1 cut(s) 528
TaaI ACNGT 1 cut(s) 659
TasI AATT 4 cut(s) 66, 202, 374, 409
TfiI GAWTC 1 cut(s) 612
Tru1I TTAA 3 cut(s) 438, 501, 554
Tru9I TTAA 3 cut(s) 438, 501, 554
TscAI CASTG 1 cut(s) 312
TseFI GTSAC 1 cut(s) 506
TseI GCWGC 2 cut(s) 96, 485
Tsp45I GTSAC 1 cut(s) 506
TspDTI ATGAA 3 cut(s) 315, 347, 607
TspRI CASTG 1 cut(s) 312
Vha464I CTTAAG 1 cut(s) 500
VpaK11BI GGWCC 1 cut(s) 197
XapI RAATTY 1 cut(s) 374
XmnI GAANNNNTTC 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.