Rh2AG135500

RTE1-HOMOLOG-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0005598
Physical Location & Seq
Reverse (-)
12283073 .. 12285569
2497 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG135500.1

Sequence Viewer

Length: 720 bp
ATGTTTTTGAGGCATCAGCAGTTTCCAACTCTGGCAATGGAAGCAAATGGAGACTCTGAGCACCACATGATGATTGATGGAAGTGCTTTACCGACTTTGCAAATTGACCCTAAAAGAGCCCGGTTTCCATGCTGCATTGTGTGGACACCGCTTCCTGTTATTTCATGGTTGATTCCTTTTGTTGGCCACATTGGCATCTGCAGAGAAGATGGTGTGATTTTGGACTTTGCAGGACCCAATTTTGTGTCCGTGGATGACTTTGCTTTTGGAGCACCAACTCGCTACATCCAAATAAGCAAAGAAAAGTGTTGTGCTATACCCTGTCCATCTGAGCATGAAGCAGTGTTGCATGATGATCCTGGAAGAGACATTTTGACATGGGATGATGCACTTCAGAAGGGCACACAGGAATTCCAACACCGGTCTTATAACCTTTTTACCTGCAATTGCCACTCTTTTGTAGCCAACAGCCTTAACAGGTTAAGCTTTCGTTCTGGTGGGTGGAATGTGGTGAACCTCGCAGCTCTCATCTTCCTTAAGGGTGAATGGGTAAGCGTAGGATCCATGGTGCAATCATTTTTGCCATTTTTAATAACATTCAGTGTTGGACTTGCAATAGGAGGTGCAGCCTTCCTAACTTACTTAGGATTCTTCATCGCCTTCCTTGTTGGTTGGTTCCTTCTTGGTACTTACTGTTTCAAGAACTTGATCCAATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 map04016
Pfam Domains
Protein Families
DUF778

Protein Analysis

239

Amino Acids

26.7

Weight (kDa)

5.85

Isoelectric Point (pI)

30.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RTE1 PF05608 36 - 181 1.5e-68 RTE1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 429
Acc36I ACCTGC 1 cut(s) 449
AciI CCGC 1 cut(s) 149
AclWI GGATC 4 cut(s) 350, 555, 568, 703
AcoI YGGCCR 1 cut(s) 184
AcsI RAATTY 1 cut(s) 410
AcuI CTGAAG 1 cut(s) 377
AfaI GTAC 1 cut(s) 688
AfiI CCNNNNNNNGG 1 cut(s) 182
AflII CTTAAG 1 cut(s) 536
AgeI ACCGGT 1 cut(s) 420
AgsI TTSAA 1 cut(s) 700
AjnI CCWGG 1 cut(s) 358
AluBI AGCT 2 cut(s) 486, 524
AluI AGCT 2 cut(s) 486, 524
Alw21I GWGCWC 2 cut(s) 63, 274
Alw26I GTCTC 2 cut(s) 45, 360
AlwI GGATC 4 cut(s) 350, 555, 568, 703
AoxI GGCC 1 cut(s) 184
ApeKI GCWGC 3 cut(s) 132, 521, 626
ApoI RAATTY 1 cut(s) 410
ArsI GACNNNNNNTTYG 2 cut(s) 248, 280
AsiGI ACCGGT 1 cut(s) 420
AspS9I GGNCC 1 cut(s) 233
AsuC2I CCSGG 1 cut(s) 121
AsuHPI GGTGA 2 cut(s) 523, 554
AvaII GGWCC 1 cut(s) 233
BaeGI GKGCMC 1 cut(s) 404
BalI TGGCCA 1 cut(s) 186
BamHI GGATCC 1 cut(s) 560
BanII GRGCYC 1 cut(s) 121
Bbv12I GWGCWC 2 cut(s) 63, 274
BbvI GCAGC 3 cut(s) 119, 533, 638
BccI CCATC 3 cut(s) 71, 203, 334
BciT130I CCWGG 1 cut(s) 360
BcnI CCSGG 1 cut(s) 121
BcoDI GTCTC 2 cut(s) 45, 360
BfmI CTRYAG 1 cut(s) 199
BfrI CTTAAG 1 cut(s) 536
BfuAI ACCTGC 1 cut(s) 449
BglI GCCNNNNNGGC 1 cut(s) 192
BisI GCNGC 3 cut(s) 133, 522, 627
BlsI GCNGC 3 cut(s) 134, 523, 628
Bme1390I CCNGG 2 cut(s) 121, 360
Bme18I GGWCC 1 cut(s) 233
BmgT120I GGNCC 1 cut(s) 233
BmiI GGNNCC 3 cut(s) 235, 562, 677
BmrFI CCNGG 2 cut(s) 121, 360
BmsI GCATC 3 cut(s) 22, 204, 376
BpuMI CCSGG 1 cut(s) 121
BsaJI CCNNGG 2 cut(s) 249, 564
BsaWI WCCGGW 1 cut(s) 420
Bsc4I CCNNNNNNNGG 1 cut(s) 182
Bse118I RCCGGY 1 cut(s) 420
Bse3DI GCAATG 1 cut(s) 42
BseBI CCWGG 1 cut(s) 360
BseDI CCNNGG 2 cut(s) 249, 564
BseGI GGATG 3 cut(s) 259, 285, 388
BseLI CCNNNNNNNGG 1 cut(s) 182
BseMI GCAATG 1 cut(s) 42
BseMII CTCAG 2 cut(s) 48, 321
BseSI GKGCMC 1 cut(s) 404
BseXI GCAGC 3 cut(s) 119, 533, 638
BsgI GTGCAG 1 cut(s) 645
BshFI GGCC 1 cut(s) 186
BshTI ACCGGT 1 cut(s) 420
BsiHKAI GWGCWC 2 cut(s) 63, 274
BsiSI CCGG 2 cut(s) 121, 421
BslI CCNNNNNNNGG 1 cut(s) 182
BsmAI GTCTC 2 cut(s) 45, 360
BsnI GGCC 1 cut(s) 186
Bsp1286I GDGCHC 4 cut(s) 63, 121, 274, 404
Bsp143I GATC 3 cut(s) 355, 560, 708
Bsp19I CCATGG 1 cut(s) 564
BspACI CCGC 1 cut(s) 149
BspANI GGCC 1 cut(s) 186
BspCNI CTCAG 2 cut(s) 49, 322
BspLI GGNNCC 3 cut(s) 235, 562, 677
BspMAI CTGCAG 1 cut(s) 203
BspMI ACCTGC 1 cut(s) 449
BspPI GGATC 4 cut(s) 350, 555, 568, 703
BspTI CTTAAG 1 cut(s) 536
BsrDI GCAATG 1 cut(s) 42
BsrFI RCCGGY 1 cut(s) 420
BssAI RCCGGY 1 cut(s) 420
BssECI CCNNGG 2 cut(s) 249, 564
BssMI GATC 3 cut(s) 355, 560, 708
BssT1I CCWWGG 1 cut(s) 564
Bst2UI CCWGG 1 cut(s) 360
Bst4CI ACNGT 1 cut(s) 695
Bst6I CTCTTC 1 cut(s) 358
BstAFI CTTAAG 1 cut(s) 536
BstDEI CTNAG 3 cut(s) 57, 330, 643
BstDSI CCRYGG 2 cut(s) 249, 564
BstF5I GGATG 3 cut(s) 259, 285, 388
BstKTI GATC 3 cut(s) 358, 563, 711
BstMAI GTCTC 2 cut(s) 45, 360
BstMBI GATC 3 cut(s) 355, 560, 708
BstMWI GCNNNNNNNGC 3 cut(s) 41, 192, 269
BstNI CCWGG 1 cut(s) 360
BstSCI CCNGG 2 cut(s) 119, 358
BstSFI CTRYAG 1 cut(s) 199
BstSLI GKGCMC 1 cut(s) 404
BstV1I GCAGC 3 cut(s) 119, 533, 638
BstX2I RGATCY 1 cut(s) 560
BstYI RGATCY 1 cut(s) 560
BsuRI GGCC 1 cut(s) 186
BtgI CCRYGG 2 cut(s) 249, 564
BtgZI GCGATG 1 cut(s) 640
BtsCI GGATG 3 cut(s) 259, 285, 388
BtsI GCAGTG 1 cut(s) 348
BtsIMutI CAGTG 2 cut(s) 348, 607
BveI ACCTGC 1 cut(s) 449
Cfr10I RCCGGY 1 cut(s) 420
Cfr13I GGNCC 1 cut(s) 233
Csp6I GTAC 1 cut(s) 687
CspAI ACCGGT 1 cut(s) 420
CviAII CATG 7 cut(s) 67, 129, 165, 335, 350, 378, 565
CviJI RGCY 7 cut(s) 119, 186, 464, 471, 486, 524, 629
CviKI_1 RGCY 7 cut(s) 119, 186, 464, 471, 486, 524, 629
CviQI GTAC 1 cut(s) 687
DdeI CTNAG 3 cut(s) 57, 330, 643
DpnI GATC 3 cut(s) 357, 562, 710
DpnII GATC 3 cut(s) 355, 560, 708
EaeI YGGCCR 1 cut(s) 184
Eam1104I CTCTTC 1 cut(s) 358
EarI CTCTTC 1 cut(s) 358
Eco130I CCWWGG 1 cut(s) 564
Eco24I GRGCYC 1 cut(s) 121
Eco47I GGWCC 1 cut(s) 233
Eco57I CTGAAG 1 cut(s) 377
EcoO109I RGGNCCY 1 cut(s) 233
EcoRI GAATTC 1 cut(s) 410
EcoRII CCWGG 1 cut(s) 358
EcoT14I CCWWGG 1 cut(s) 564
EcoT38I GRGCYC 1 cut(s) 121
ErhI CCWWGG 1 cut(s) 564
FaeI CATG 7 cut(s) 70, 132, 168, 338, 353, 381, 568
FaiI YATR 9 cut(s) 68, 130, 166, 317, 336, 351, 379, 429, 566
FatI CATG 7 cut(s) 66, 128, 164, 334, 349, 377, 564
Fnu4HI GCNGC 3 cut(s) 133, 522, 627
FokI GGATG 3 cut(s) 266, 272, 395
FriOI GRGCYC 1 cut(s) 121
Fsp4HI GCNGC 3 cut(s) 133, 522, 627
GluI GCNGC 3 cut(s) 133, 522, 627
HaeIII GGCC 1 cut(s) 186
HapII CCGG 2 cut(s) 121, 421
Hin1II CATG 7 cut(s) 70, 132, 168, 338, 353, 381, 568
HindIII AAGCTT 1 cut(s) 484
HinfI GANTC 3 cut(s) 53, 172, 648
HpaII CCGG 2 cut(s) 121, 421
HphI GGTGA 2 cut(s) 523, 554
Hpy166II GTNNAC 2 cut(s) 144, 514
Hpy188I TCNGA 3 cut(s) 58, 331, 396
Hpy188III TCNNGA 1 cut(s) 700
Hpy8I GTNNAC 2 cut(s) 144, 514
HpyAV CCTTC 4 cut(s) 391, 640, 670, 689
HpyCH4III ACNGT 1 cut(s) 695
HpyF10VI GCNNNNNNNGC 3 cut(s) 41, 192, 269
HpyF3I CTNAG 3 cut(s) 57, 330, 643
Hsp92II CATG 7 cut(s) 70, 132, 168, 338, 353, 381, 568
Kzo9I GATC 3 cut(s) 355, 560, 708
LmnI GCTCC 1 cut(s) 269
Lsp1109I GCAGC 3 cut(s) 119, 533, 638
LweI GCATC 3 cut(s) 22, 204, 376
MalI GATC 3 cut(s) 357, 562, 710
MboI GATC 3 cut(s) 355, 560, 708
MboII GAAGA 4 cut(s) 218, 375, 523, 643
MfeI CAATTG 2 cut(s) 445, 713
MflI RGATCY 1 cut(s) 560
MhlI GDGCHC 4 cut(s) 63, 121, 274, 404
MlsI TGGCCA 1 cut(s) 186
MluCI AATT 5 cut(s) 102, 238, 410, 445, 713
MluNI TGGCCA 1 cut(s) 186
MlyI GAGTC 1 cut(s) 47
MmeI TCCRAC 3 cut(s) 50, 439, 586
MnlI CCTC 3 cut(s) 3, 527, 614
Mox20I TGGCCA 1 cut(s) 186
MscI TGGCCA 1 cut(s) 186
MseI TTAA 4 cut(s) 474, 482, 537, 590
Msp20I TGGCCA 1 cut(s) 186
MspCI CTTAAG 1 cut(s) 536
MspI CCGG 2 cut(s) 121, 421
MspR9I CCNGG 2 cut(s) 121, 360
MunI CAATTG 2 cut(s) 445, 713
MvaI CCWGG 1 cut(s) 360
MwoI GCNNNNNNNGC 3 cut(s) 41, 192, 269
NciI CCSGG 1 cut(s) 121
NcoI CCATGG 1 cut(s) 564
NdeII GATC 3 cut(s) 355, 560, 708
NlaIII CATG 7 cut(s) 70, 132, 168, 338, 353, 381, 568
NlaIV GGNNCC 3 cut(s) 235, 562, 677
PfeI GAWTC 2 cut(s) 172, 648
PfoI TCCNGGA 1 cut(s) 358
PinAI ACCGGT 1 cut(s) 420
PkrI GCNGC 3 cut(s) 134, 523, 628
PleI GAGTC 1 cut(s) 47
PpsI GAGTC 1 cut(s) 47
PpuMI RGGWCCY 1 cut(s) 233
PsiI TTATAA 1 cut(s) 429
Psp5II RGGWCCY 1 cut(s) 233
Psp6I CCWGG 1 cut(s) 358
PspGI CCWGG 1 cut(s) 358
PspN4I GGNNCC 3 cut(s) 235, 562, 677
PspPI GGNCC 1 cut(s) 233
PspPPI RGGWCCY 1 cut(s) 233
PstI CTGCAG 1 cut(s) 203
PsuI RGATCY 1 cut(s) 560
RsaI GTAC 1 cut(s) 688
RsaNI GTAC 1 cut(s) 687
SaqAI TTAA 4 cut(s) 474, 482, 537, 590
SatI GCNGC 3 cut(s) 133, 522, 627
Sau3AI GATC 3 cut(s) 355, 560, 708
Sau96I GGNCC 1 cut(s) 233
SchI GAGTC 1 cut(s) 47
ScrFI CCNGG 2 cut(s) 121, 360
SduI GDGCHC 4 cut(s) 63, 121, 274, 404
SetI ASST 7 cut(s) 435, 443, 482, 488, 519, 526, 625
SfaNI GCATC 3 cut(s) 22, 204, 376
SfcI CTRYAG 1 cut(s) 199
SinI GGWCC 1 cut(s) 233
SmlI CTYRAG 1 cut(s) 536
SmoI CTYRAG 1 cut(s) 536
Sse9I AATT 5 cut(s) 102, 238, 410, 445, 713
SsiI CCGC 1 cut(s) 149
StyD4I CCNGG 2 cut(s) 119, 358
StyI CCWWGG 1 cut(s) 564
TaaI ACNGT 1 cut(s) 695
TasI AATT 5 cut(s) 102, 238, 410, 445, 713
TfiI GAWTC 2 cut(s) 172, 648
Tru1I TTAA 4 cut(s) 474, 482, 537, 590
Tru9I TTAA 4 cut(s) 474, 482, 537, 590
TscAI CASTG 2 cut(s) 348, 607
TseI GCWGC 3 cut(s) 132, 521, 626
TspDTI ATGAA 3 cut(s) 153, 351, 643
TspGWI ACGGA 1 cut(s) 238
TspRI CASTG 2 cut(s) 348, 607
Vha464I CTTAAG 1 cut(s) 536
VpaK11BI GGWCC 1 cut(s) 233
XapI RAATTY 1 cut(s) 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.