Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0005598

Physical Location & Seq

Genomic Coordinates Forward (+)

7658820 .. 7659798

Gene Structure 979 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g10870.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGTTTGGTCATAAGATGTTCAGAAAGCATTCCGTTTTATCTTGTATACAACACAATTTGAAAATTCTCTGTCTAATAGTTGATTGTGAAGTGTCTAATGTTTTTGAGGCAATTGAGCAGCTTCCAATTTTGGCAATGGAAACAAGTGCAGGCCCCGAGCACAACTTGATGATTGGTGGAAGTGATTCACCGACTTTGCAAATTGACCCCAAAAGATCCCGGTTCCCATGCTGCATTGTGTGGACACCCCTTCCTGTTATTTCATGGTTGGTTCCTTTCGTTGGCCACATTGGCATATGCAGAGAAGATGGCGTCATATTGGACTTTGCGGGGCCCAATTTCGTGTGCGTGGATAACTTTTCTTTTGGAGCAGCAACTCGGTACATCCAAATAAACAAAGAAAAGTGTTGCACTATTCCCGATCCGTCTGAGTACCAAAGTGAGGATCAATATGGGGAGAATGAACCTGGTAGAGACATAAAGACATGGGATGATGCACTCCGGAAGGGCACTCAGGAATTCCAACACCGAGCATACAACCTTTTTACCTGCAATTGCCACTCCTTCGTAGCCAACAACCTAAACAGGTTAGGGTTTCGGTCTGGTGGGTGGAATGTGGTGAACCTTGCAGCTCTGATCTTCCTCAAGGGTCAGTGGGTGAGCACAGCAGCCGTGGTGCAGTCCTTACTACCGTTTTTAATAATATTCTGTCTCGGAGTTGCATTAGCAGGTTCAACCTTCCTAACGTACTTAGGTTTCTTCACCGCCTTTCTTGTCGGTTGGTTTCTTCTTGGTACGTACTGTTTCAAGAGTTTGATCCAATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

DUF778

Protein Analysis

276

Amino Acids

30.78

Weight (kDa)

6.15

Isoelectric Point (pI)

40.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005598)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51040 AT3G51040 AT3G51040
fragaria_vesca	FvH4_1g12370 FvH4_1g12370 FvH4_1g12370 FvH4_1g12370 FvH4_1g12370 FvH4_1g12370
malus_domestica	MD02G1137300.v1.1 MD15G1250900.v1.1
prunus_persica	Prupe.7G163300_v2.0.a1 Prupe.7G163300_v2.0.a1 Prupe.7G163300_v2.0.a1 Prupe.7G163300_v2.0.a1 Prupe.7G163300_v2.0.a1
pyrus_communis	pycom02g10870 pycom15g22130
rosa_chinensis	RchiOBHm_Chr2g0100211
rosa_laevigata	RLG00000016945
rosa_multiflora	Rmu_sc0002547.1_g000005
rosa_roxburghii	Rroxscaffold_2G00142480
rosa_rugosa	Rorug02G0086300
rosa_samantha	Rh2AG135500 Rh2BG138900 Rh2CG140700 Rh2DG140900
rosa_wichuraiana	Rw2G010580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	557, 719
AccI	GTMKAC	1 cut(s)	46
AccIII	TCCGGA	1 cut(s)	501
AciI	CCGC	2 cut(s)	329, 765
AclWI	GGATC	4 cut(s)	210, 416, 453, 811
AcoI	YGGCCR	1 cut(s)	283
AcsI	RAATTY	2 cut(s)	63, 518
AcyI	GRCGYC	1 cut(s)	312
AfaI	GTAC	5 cut(s)	383, 434, 749, 796, 800
AfiI	CCNNNNNNNGG	2 cut(s)	281, 442
AgsI	TTSAA	3 cut(s)	61, 735, 808
AjnI	CCWGG	1 cut(s)	466
AluBI	AGCT	2 cut(s)	121, 632
AluI	AGCT	2 cut(s)	121, 632
Alw21I	GWGCWC	2 cut(s)	162, 665
Alw26I	GTCTC	2 cut(s)	468, 716
AlwI	GGATC	4 cut(s)	210, 416, 453, 811
Ama87I	CYCGRG	1 cut(s)	155
Aor13HI	TCCGGA	1 cut(s)	501
AoxI	GGCC	3 cut(s)	151, 283, 332
ApaI	GGGCCC	1 cut(s)	336
ApeKI	GCWGC	5 cut(s)	118, 231, 371, 629, 668
ApoI	RAATTY	2 cut(s)	63, 518
Asp700I	GAANNNNTTC	2 cut(s)	28, 184
AspS9I	GGNCC	3 cut(s)	152, 332, 333
AsuC2I	CCSGG	1 cut(s)	220
AsuHPI	GGTGA	4 cut(s)	180, 631, 670, 754
AvaI	CYCGRG	1 cut(s)	155
BaeGI	GKGCMC	2 cut(s)	336, 512
BalI	TGGCCA	1 cut(s)	285
BanII	GRGCYC	1 cut(s)	336
Bbv12I	GWGCWC	2 cut(s)	162, 665
BbvI	GCAGC	5 cut(s)	130, 218, 383, 641, 680
BccI	CCATC	1 cut(s)	302
BceAI	ACGGC	1 cut(s)	656
BciT130I	CCWGG	1 cut(s)	468
BcnI	CCSGG	1 cut(s)	220
BcoDI	GTCTC	2 cut(s)	468, 716
BfuAI	ACCTGC	2 cut(s)	557, 719
BglI	GCCNNNNNGGC	1 cut(s)	291
BisI	GCNGC	5 cut(s)	119, 232, 372, 630, 669
BlsI	GCNGC	5 cut(s)	120, 233, 373, 631, 670
Bme1390I	CCNGG	2 cut(s)	220, 468
BmeT110I	CYCGRG	1 cut(s)	155
BmgT120I	GGNCC	3 cut(s)	152, 332, 333
BmiI	GGNNCC	5 cut(s)	154, 224, 273, 333, 334
BmrFI	CCNGG	2 cut(s)	220, 468
BmsI	GCATC	1 cut(s)	484
BpuEI	CTTGAG	1 cut(s)	629
BpuMI	CCSGG	1 cut(s)	220
BsaAI	YACGTR	1 cut(s)	798
BsaHI	GRCGYC	1 cut(s)	312
BsaJI	CCNNGG	1 cut(s)	672
BsaWI	WCCGGW	1 cut(s)	501
Bsc4I	CCNNNNNNNGG	2 cut(s)	281, 442
Bse3DI	GCAATG	1 cut(s)	141
BseAI	TCCGGA	1 cut(s)	501
BseBI	CCWGG	1 cut(s)	468
BseDI	CCNNGG	1 cut(s)	672
BseGI	GGATG	2 cut(s)	384, 496
BseLI	CCNNNNNNNGG	2 cut(s)	281, 442
BseMI	GCAATG	1 cut(s)	141
BseMII	CTCAG	2 cut(s)	420, 527
BseSI	GKGCMC	2 cut(s)	336, 512
BseXI	GCAGC	5 cut(s)	130, 218, 383, 641, 680
BsgI	GTGCAG	2 cut(s)	168, 698
BshFI	GGCC	3 cut(s)	153, 285, 334
BsiHKAI	GWGCWC	2 cut(s)	162, 665
BsiHKCI	CYCGRG	1 cut(s)	155
BsiSI	CCGG	2 cut(s)	220, 502
BslI	CCNNNNNNNGG	2 cut(s)	281, 442
BsmAI	GTCTC	2 cut(s)	468, 716
BsmI	GAATGC	1 cut(s)	28
BsnI	GGCC	3 cut(s)	153, 285, 334
BsoBI	CYCGRG	1 cut(s)	155
Bsp120I	GGGCCC	1 cut(s)	332
Bsp1286I	GDGCHC	4 cut(s)	162, 336, 512, 665
Bsp13I	TCCGGA	1 cut(s)	501
Bsp143I	GATC	5 cut(s)	215, 421, 445, 636, 816
BspACI	CCGC	2 cut(s)	329, 765
BspANI	GGCC	3 cut(s)	153, 285, 334
BspCNI	CTCAG	2 cut(s)	421, 526
BspEI	TCCGGA	1 cut(s)	501
BspLI	GGNNCC	5 cut(s)	154, 224, 273, 333, 334
BspMI	ACCTGC	2 cut(s)	557, 719
BspPI	GGATC	4 cut(s)	210, 416, 453, 811
BsrDI	GCAATG	1 cut(s)	141
BssECI	CCNNGG	1 cut(s)	672
BssMI	GATC	5 cut(s)	215, 421, 445, 636, 816
BssNAI	GTATAC	1 cut(s)	47
BssNI	GRCGYC	1 cut(s)	312
Bst1107I	GTATAC	1 cut(s)	47
Bst2UI	CCWGG	1 cut(s)	468
Bst4CI	ACNGT	2 cut(s)	693, 803
BstACI	GRCGYC	1 cut(s)	312
BstBAI	YACGTR	1 cut(s)	798
BstC8I	GCNNGC	1 cut(s)	151
BstDEI	CTNAG	3 cut(s)	429, 513, 751
BstDSI	CCRYGG	1 cut(s)	672
BstF5I	GGATG	2 cut(s)	384, 496
BstKTI	GATC	5 cut(s)	218, 424, 448, 639, 819
BstMAI	GTCTC	2 cut(s)	468, 716
BstMBI	GATC	5 cut(s)	215, 421, 445, 636, 816
BstMWI	GCNNNNNNNGC	1 cut(s)	291
BstNI	CCWGG	1 cut(s)	468
BstSCI	CCNGG	2 cut(s)	218, 466
BstSLI	GKGCMC	2 cut(s)	336, 512
BstSNI	TACGTA	1 cut(s)	798
BstV1I	GCAGC	5 cut(s)	130, 218, 383, 641, 680
BstX2I	RGATCY	1 cut(s)	215
BstYI	RGATCY	1 cut(s)	215
BstZ17I	GTATAC	1 cut(s)	47
BsuRI	GGCC	3 cut(s)	153, 285, 334
BtgI	CCRYGG	1 cut(s)	672
BtsCI	GGATG	2 cut(s)	384, 496
BtsIMutI	CAGTG	1 cut(s)	659
BveI	ACCTGC	2 cut(s)	557, 719
Cac8I	GCNNGC	1 cut(s)	151
Cfr13I	GGNCC	3 cut(s)	152, 332, 333
CseI	GACGC	1 cut(s)	301
CsiI	ACCWGGT	1 cut(s)	466
Csp6I	GTAC	5 cut(s)	382, 433, 748, 795, 799
CviAII	CATG	3 cut(s)	228, 264, 486
CviJI	RGCY	7 cut(s)	121, 153, 285, 334, 572, 632, 671
CviKI_1	RGCY	7 cut(s)	121, 153, 285, 334, 572, 632, 671
CviQI	GTAC	5 cut(s)	382, 433, 748, 795, 799
DdeI	CTNAG	3 cut(s)	429, 513, 751
DpnI	GATC	5 cut(s)	217, 423, 447, 638, 818
DpnII	GATC	5 cut(s)	215, 421, 445, 636, 816
EaeI	YGGCCR	1 cut(s)	283
Eco105I	TACGTA	1 cut(s)	798
Eco24I	GRGCYC	1 cut(s)	336
Eco88I	CYCGRG	1 cut(s)	155
EcoO109I	RGGNCCY	2 cut(s)	152, 332
EcoRI	GAATTC	1 cut(s)	518
EcoRII	CCWGG	1 cut(s)	466
EcoT38I	GRGCYC	1 cut(s)	336
FaeI	CATG	3 cut(s)	231, 267, 489
FatI	CATG	3 cut(s)	227, 263, 485
FauI	CCCGC	1 cut(s)	322
FauNDI	CATATG	1 cut(s)	296
FblI	GTMKAC	1 cut(s)	46
Fnu4HI	GCNGC	5 cut(s)	119, 232, 372, 630, 669
FokI	GGATG	2 cut(s)	371, 503
FriOI	GRGCYC	1 cut(s)	336
Fsp4HI	GCNGC	5 cut(s)	119, 232, 372, 630, 669
GluI	GCNGC	5 cut(s)	119, 232, 372, 630, 669
HaeIII	GGCC	3 cut(s)	153, 285, 334
HapII	CCGG	2 cut(s)	220, 502
HgaI	GACGC	1 cut(s)	301
Hin1I	GRCGYC	1 cut(s)	312
Hin1II	CATG	3 cut(s)	231, 267, 489
HinfI	GANTC	1 cut(s)	185
HpaII	CCGG	2 cut(s)	220, 502
HphI	GGTGA	4 cut(s)	180, 631, 670, 754
Hpy166II	GTNNAC	3 cut(s)	47, 243, 622
Hpy188I	TCNGA	4 cut(s)	23, 430, 636, 716
Hpy188III	TCNNGA	4 cut(s)	419, 502, 515, 808
Hpy8I	GTNNAC	3 cut(s)	47, 243, 622
HpyAV	CCTTC	4 cut(s)	260, 499, 574, 748
HpyCH4III	ACNGT	2 cut(s)	693, 803
HpyCH4IV	ACGT	2 cut(s)	746, 797
HpyF10VI	GCNNNNNNNGC	1 cut(s)	291
HpyF3I	CTNAG	3 cut(s)	429, 513, 751
HpySE526I	ACGT	2 cut(s)	746, 797
Hsp92I	GRCGYC	1 cut(s)	312
Hsp92II	CATG	3 cut(s)	231, 267, 489
Kpn2I	TCCGGA	1 cut(s)	501
Kzo9I	GATC	5 cut(s)	215, 421, 445, 636, 816
LmnI	GCTCC	1 cut(s)	368
Lsp1109I	GCAGC	5 cut(s)	130, 218, 383, 641, 680
LweI	GCATC	1 cut(s)	484
MabI	ACCWGGT	1 cut(s)	466
MaeII	ACGT	2 cut(s)	746, 797
MalI	GATC	5 cut(s)	217, 423, 447, 638, 818
MboI	GATC	5 cut(s)	215, 421, 445, 636, 816
MboII	GAAGA	4 cut(s)	317, 631, 751, 779
MfeI	CAATTG	3 cut(s)	111, 553, 821
MflI	RGATCY	1 cut(s)	215
MhlI	GDGCHC	4 cut(s)	162, 336, 512, 665
MlsI	TGGCCA	1 cut(s)	285
MluCI	AATT	9 cut(s)	55, 63, 111, 126, 201, 337, 518, 553, 821
MluNI	TGGCCA	1 cut(s)	285
MmeI	TCCRAC	1 cut(s)	547
MnlI	CCTC	3 cut(s)	100, 436, 653
Mox20I	TGGCCA	1 cut(s)	285
MroI	TCCGGA	1 cut(s)	501
MroXI	GAANNNNTTC	2 cut(s)	28, 184
MscI	TGGCCA	1 cut(s)	285
MseI	TTAA	1 cut(s)	698
Msp20I	TGGCCA	1 cut(s)	285
MspI	CCGG	2 cut(s)	220, 502
MspR9I	CCNGG	2 cut(s)	220, 468
MunI	CAATTG	3 cut(s)	111, 553, 821
Mva1269I	GAATGC	1 cut(s)	28
MvaI	CCWGG	1 cut(s)	468
MwoI	GCNNNNNNNGC	1 cut(s)	291
NciI	CCSGG	1 cut(s)	220
NdeI	CATATG	1 cut(s)	296
NdeII	GATC	5 cut(s)	215, 421, 445, 636, 816
NlaIII	CATG	3 cut(s)	231, 267, 489
NlaIV	GGNNCC	5 cut(s)	154, 224, 273, 333, 334
PctI	GAATGC	1 cut(s)	28
PdmI	GAANNNNTTC	2 cut(s)	28, 184
PfeI	GAWTC	1 cut(s)	185
PkrI	GCNGC	5 cut(s)	120, 233, 373, 631, 670
Ppu21I	YACGTR	1 cut(s)	798
Psp6I	CCWGG	1 cut(s)	466
PspGI	CCWGG	1 cut(s)	466
PspN4I	GGNNCC	5 cut(s)	154, 224, 273, 333, 334
PspOMI	GGGCCC	1 cut(s)	332
PspPI	GGNCC	3 cut(s)	152, 332, 333
PsuI	RGATCY	1 cut(s)	215
RsaI	GTAC	5 cut(s)	383, 434, 749, 796, 800
RsaNI	GTAC	5 cut(s)	382, 433, 748, 795, 799
SaqAI	TTAA	1 cut(s)	698
SatI	GCNGC	5 cut(s)	119, 232, 372, 630, 669
Sau3AI	GATC	5 cut(s)	215, 421, 445, 636, 816
Sau96I	GGNCC	3 cut(s)	152, 332, 333
ScrFI	CCNGG	2 cut(s)	220, 468
SduI	GDGCHC	4 cut(s)	162, 336, 512, 665
SexAI	ACCWGGT	1 cut(s)	466
SfaNI	GCATC	1 cut(s)	484
SmlI	CTYRAG	1 cut(s)	644
SmoI	CTYRAG	1 cut(s)	644
SnaBI	TACGTA	1 cut(s)	798
Sse9I	AATT	9 cut(s)	55, 63, 111, 126, 201, 337, 518, 553, 821
SsiI	CCGC	2 cut(s)	329, 765
SspI	AATATT	1 cut(s)	705
StyD4I	CCNGG	2 cut(s)	218, 466
TaaI	ACNGT	2 cut(s)	693, 803
TaiI	ACGT	2 cut(s)	749, 800
TaqII	GACCGA	1 cut(s)	588
TasI	AATT	9 cut(s)	55, 63, 111, 126, 201, 337, 518, 553, 821
TfiI	GAWTC	1 cut(s)	185
Tru1I	TTAA	1 cut(s)	698
Tru9I	TTAA	1 cut(s)	698
TscAI	CASTG	1 cut(s)	659
TseI	GCWGC	5 cut(s)	118, 231, 371, 629, 668
TspDTI	ATGAA	2 cut(s)	252, 477
TspGWI	ACGGA	2 cut(s)	22, 414
TspRI	CASTG	1 cut(s)	659
XapI	RAATTY	2 cut(s)	63, 518
XmiI	GTMKAC	1 cut(s)	46
XmnI	GAANNNNTTC	2 cut(s)	28, 184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.