Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0005598

Physical Location & Seq

Genomic Coordinates Forward (+)

16230735 .. 16231414

Gene Structure 680 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g22130.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGCTGTATTGTGTGGACACCCCTTCCTGTTGTTTCATGGTTGATTCCTTTTGTTGGCCACATTGGCATATGCAGAGAAGATGGTGTGATTTGGACTTTGCGGGGCCCAATTTCGTGTGCGTGGATAACTTTGCTTTTGGAGCAGCGACTTGCTACATCCAAATAAGCAAAGAAAAGTGTTGCGCTATTCCCGATCCGTCTGAGTACCTAAGTGAGGATCAATATGGGCAGAATGAACCTGGAAGCGACATAAAGACATGGGATGATGCGCTCCGGAAGGGCACTCAGGAATTCCAACCCCGAGCTTACAACCTTTTTACCTGCAATTCCCACTCCTTTGTAGCCAACAACCTAAACAGGTTAGGCTTTCGGTCTGGTGGGTGGAATGTGGTGAACCTTGCAGCTCTGATCTTTCTCAAGGATCAGTGGGTGAGCACAGCAGCCGTGGTGCAATCCTTACTACCGTTTTTAATAACATTCTGTCTCGGAGTTGCATTAGCAGGTTCAACCTTCCTAAAGTACTTAGGTTTCTTCACCGCCTTTCTTGTCGGTTGGTTTCTTCTTGGTACGTACTGCTCCAAGAGATTGATCCAATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

DUF778

Protein Analysis

200

Amino Acids

22.55

Weight (kDa)

5.86

Isoelectric Point (pI)

30.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005598)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51040 AT3G51040 AT3G51040
fragaria_vesca	FvH4_1g12370 FvH4_1g12370 FvH4_1g12370 FvH4_1g12370 FvH4_1g12370 FvH4_1g12370
malus_domestica	MD02G1137300.v1.1 MD15G1250900.v1.1
prunus_persica	Prupe.7G163300_v2.0.a1 Prupe.7G163300_v2.0.a1 Prupe.7G163300_v2.0.a1 Prupe.7G163300_v2.0.a1 Prupe.7G163300_v2.0.a1
pyrus_communis	pycom02g10870 pycom15g22130
rosa_chinensis	RchiOBHm_Chr2g0100211
rosa_laevigata	RLG00000016945
rosa_multiflora	Rmu_sc0002547.1_g000005
rosa_roxburghii	Rroxscaffold_2G00142480
rosa_rugosa	Rorug02G0086300
rosa_samantha	Rh2AG135500 Rh2BG138900 Rh2CG140700 Rh2DG140900
rosa_wichuraiana	Rw2G010580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	329, 491
AccIII	TCCGGA	1 cut(s)	273
AciI	CCGC	2 cut(s)	101, 537
AclWI	GGATC	4 cut(s)	188, 225, 429, 583
AcoI	YGGCCR	1 cut(s)	56
AcsI	RAATTY	1 cut(s)	290
AfaI	GTAC	4 cut(s)	206, 521, 568, 572
AfiI	CCNNNNNNNGG	2 cut(s)	54, 214
AgsI	TTSAA	1 cut(s)	507
AjnI	CCWGG	1 cut(s)	238
AluBI	AGCT	2 cut(s)	305, 404
AluI	AGCT	2 cut(s)	305, 404
Alw21I	GWGCWC	1 cut(s)	437
Alw26I	GTCTC	1 cut(s)	488
AlwI	GGATC	4 cut(s)	188, 225, 429, 583
Ama87I	CYCGRG	1 cut(s)	300
Aor13HI	TCCGGA	1 cut(s)	273
AoxI	GGCC	2 cut(s)	56, 104
ApaI	GGGCCC	1 cut(s)	108
ApeKI	GCWGC	3 cut(s)	143, 401, 440
ApoI	RAATTY	1 cut(s)	290
AspLEI	GCGC	2 cut(s)	185, 271
AspS9I	GGNCC	2 cut(s)	104, 105
AsuHPI	GGTGA	3 cut(s)	403, 442, 526
AvaI	CYCGRG	1 cut(s)	300
BaeGI	GKGCMC	2 cut(s)	108, 284
BalI	TGGCCA	1 cut(s)	58
BanII	GRGCYC	1 cut(s)	108
Bbv12I	GWGCWC	1 cut(s)	437
BbvI	GCAGC	3 cut(s)	155, 413, 452
BccI	CCATC	1 cut(s)	75
BceAI	ACGGC	1 cut(s)	428
BciT130I	CCWGG	1 cut(s)	240
BcoDI	GTCTC	1 cut(s)	488
BfuAI	ACCTGC	2 cut(s)	329, 491
BglI	GCCNNNNNGGC	1 cut(s)	64
BisI	GCNGC	3 cut(s)	144, 402, 441
BlsI	GCNGC	3 cut(s)	145, 403, 442
BmcAI	AGTACT	1 cut(s)	521
Bme1390I	CCNGG	1 cut(s)	240
BmeT110I	CYCGRG	1 cut(s)	300
BmgT120I	GGNCC	2 cut(s)	104, 105
BmiI	GGNNCC	2 cut(s)	105, 106
BmrFI	CCNGG	1 cut(s)	240
BmsI	GCATC	1 cut(s)	256
BpuEI	CTTGAG	1 cut(s)	401
BsaAI	YACGTR	1 cut(s)	570
BsaJI	CCNNGG	1 cut(s)	444
BsaWI	WCCGGW	1 cut(s)	273
Bsc4I	CCNNNNNNNGG	2 cut(s)	54, 214
BseAI	TCCGGA	1 cut(s)	273
BseBI	CCWGG	1 cut(s)	240
BseDI	CCNNGG	1 cut(s)	444
BseGI	GGATG	2 cut(s)	156, 268
BseLI	CCNNNNNNNGG	2 cut(s)	54, 214
BseMII	CTCAG	2 cut(s)	192, 299
BseSI	GKGCMC	2 cut(s)	108, 284
BseXI	GCAGC	3 cut(s)	155, 413, 452
BshFI	GGCC	2 cut(s)	58, 106
BsiHKAI	GWGCWC	1 cut(s)	437
BsiHKCI	CYCGRG	1 cut(s)	300
BsiSI	CCGG	1 cut(s)	274
BslI	CCNNNNNNNGG	2 cut(s)	54, 214
BsmAI	GTCTC	1 cut(s)	488
BsnI	GGCC	2 cut(s)	58, 106
BsoBI	CYCGRG	1 cut(s)	300
Bsp120I	GGGCCC	1 cut(s)	104
Bsp1286I	GDGCHC	3 cut(s)	108, 284, 437
Bsp13I	TCCGGA	1 cut(s)	273
Bsp143I	GATC	5 cut(s)	193, 217, 408, 421, 588
BspACI	CCGC	2 cut(s)	101, 537
BspANI	GGCC	2 cut(s)	58, 106
BspCNI	CTCAG	2 cut(s)	193, 298
BspEI	TCCGGA	1 cut(s)	273
BspLI	GGNNCC	2 cut(s)	105, 106
BspMI	ACCTGC	2 cut(s)	329, 491
BspPI	GGATC	4 cut(s)	188, 225, 429, 583
BssECI	CCNNGG	1 cut(s)	444
BssMI	GATC	5 cut(s)	193, 217, 408, 421, 588
Bst2UI	CCWGG	1 cut(s)	240
Bst4CI	ACNGT	1 cut(s)	465
BstBAI	YACGTR	1 cut(s)	570
BstDEI	CTNAG	4 cut(s)	201, 209, 285, 523
BstDSI	CCRYGG	1 cut(s)	444
BstENI	CCTNNNNNAGG	1 cut(s)	212
BstF5I	GGATG	2 cut(s)	156, 268
BstHHI	GCGC	2 cut(s)	185, 271
BstKTI	GATC	5 cut(s)	196, 220, 411, 424, 591
BstMAI	GTCTC	1 cut(s)	488
BstMBI	GATC	5 cut(s)	193, 217, 408, 421, 588
BstMWI	GCNNNNNNNGC	2 cut(s)	64, 140
BstNI	CCWGG	1 cut(s)	240
BstSCI	CCNGG	1 cut(s)	238
BstSLI	GKGCMC	2 cut(s)	108, 284
BstSNI	TACGTA	1 cut(s)	570
BstV1I	GCAGC	3 cut(s)	155, 413, 452
BsuRI	GGCC	2 cut(s)	58, 106
BtgI	CCRYGG	1 cut(s)	444
BtsCI	GGATG	2 cut(s)	156, 268
BtsIMutI	CAGTG	1 cut(s)	431
BveI	ACCTGC	2 cut(s)	329, 491
CfoI	GCGC	2 cut(s)	185, 271
Cfr13I	GGNCC	2 cut(s)	104, 105
Csp6I	GTAC	4 cut(s)	205, 520, 567, 571
CviAII	CATG	2 cut(s)	37, 258
CviJI	RGCY	7 cut(s)	58, 106, 305, 344, 366, 404, 443
CviKI_1	RGCY	7 cut(s)	58, 106, 305, 344, 366, 404, 443
CviQI	GTAC	4 cut(s)	205, 520, 567, 571
DdeI	CTNAG	4 cut(s)	201, 209, 285, 523
DpnI	GATC	5 cut(s)	195, 219, 410, 423, 590
DpnII	GATC	5 cut(s)	193, 217, 408, 421, 588
EaeI	YGGCCR	1 cut(s)	56
Eco105I	TACGTA	1 cut(s)	570
Eco24I	GRGCYC	1 cut(s)	108
Eco88I	CYCGRG	1 cut(s)	300
EcoNI	CCTNNNNNAGG	1 cut(s)	212
EcoO109I	RGGNCCY	1 cut(s)	104
EcoRI	GAATTC	1 cut(s)	290
EcoRII	CCWGG	1 cut(s)	238
EcoT38I	GRGCYC	1 cut(s)	108
FaeI	CATG	2 cut(s)	40, 261
FaiI	YATR	6 cut(s)	38, 69, 71, 225, 251, 259
FatI	CATG	2 cut(s)	36, 257
FauI	CCCGC	1 cut(s)	94
FauNDI	CATATG	1 cut(s)	69
Fnu4HI	GCNGC	3 cut(s)	144, 402, 441
FokI	GGATG	2 cut(s)	143, 275
FriOI	GRGCYC	1 cut(s)	108
Fsp4HI	GCNGC	3 cut(s)	144, 402, 441
GlaI	GCGC	2 cut(s)	184, 270
GluI	GCNGC	3 cut(s)	144, 402, 441
HaeIII	GGCC	2 cut(s)	58, 106
HapII	CCGG	1 cut(s)	274
HhaI	GCGC	2 cut(s)	185, 271
Hin1II	CATG	2 cut(s)	40, 261
Hin6I	GCGC	2 cut(s)	183, 269
HinP1I	GCGC	2 cut(s)	183, 269
HinfI	GANTC	1 cut(s)	44
HpaII	CCGG	1 cut(s)	274
HphI	GGTGA	3 cut(s)	403, 442, 526
Hpy166II	GTNNAC	2 cut(s)	16, 394
Hpy188I	TCNGA	3 cut(s)	202, 408, 488
Hpy188III	TCNNGA	3 cut(s)	191, 274, 287
Hpy8I	GTNNAC	2 cut(s)	16, 394
HpyAV	CCTTC	3 cut(s)	33, 271, 520
HpyCH4III	ACNGT	1 cut(s)	465
HpyCH4IV	ACGT	1 cut(s)	569
HpyCH4V	TGCA	5 cut(s)	73, 324, 401, 451, 494
HpyF10VI	GCNNNNNNNGC	2 cut(s)	64, 140
HpyF3I	CTNAG	4 cut(s)	201, 209, 285, 523
HpySE526I	ACGT	1 cut(s)	569
Hsp92II	CATG	2 cut(s)	40, 261
HspAI	GCGC	2 cut(s)	183, 269
Kpn2I	TCCGGA	1 cut(s)	273
Kzo9I	GATC	5 cut(s)	193, 217, 408, 421, 588
LmnI	GCTCC	3 cut(s)	140, 276, 581
LpnPI	CCDG	9 cut(s)	40, 225, 252, 272, 287, 334, 343, 360, 486
Lsp1109I	GCAGC	3 cut(s)	155, 413, 452
LweI	GCATC	1 cut(s)	256
MaeII	ACGT	1 cut(s)	569
MalI	GATC	5 cut(s)	195, 219, 410, 423, 590
MboI	GATC	5 cut(s)	193, 217, 408, 421, 588
MboII	GAAGA	3 cut(s)	90, 523, 551
MfeI	CAATTG	1 cut(s)	593
MhlI	GDGCHC	3 cut(s)	108, 284, 437
MlsI	TGGCCA	1 cut(s)	58
MluCI	AATT	4 cut(s)	109, 290, 325, 593
MluNI	TGGCCA	1 cut(s)	58
MmeI	TCCRAC	1 cut(s)	319
MnlI	CCTC	1 cut(s)	208
Mox20I	TGGCCA	1 cut(s)	58
MroI	TCCGGA	1 cut(s)	273
MscI	TGGCCA	1 cut(s)	58
MseI	TTAA	1 cut(s)	470
Msp20I	TGGCCA	1 cut(s)	58
MspI	CCGG	1 cut(s)	274
MspR9I	CCNGG	1 cut(s)	240
MunI	CAATTG	1 cut(s)	593
MvaI	CCWGG	1 cut(s)	240
MwoI	GCNNNNNNNGC	2 cut(s)	64, 140
NdeI	CATATG	1 cut(s)	69
NdeII	GATC	5 cut(s)	193, 217, 408, 421, 588
NlaIII	CATG	2 cut(s)	40, 261
NlaIV	GGNNCC	2 cut(s)	105, 106
PfeI	GAWTC	1 cut(s)	44
PkrI	GCNGC	3 cut(s)	145, 403, 442
Ppu21I	YACGTR	1 cut(s)	570
Psp6I	CCWGG	1 cut(s)	238
PspGI	CCWGG	1 cut(s)	238
PspN4I	GGNNCC	2 cut(s)	105, 106
PspOMI	GGGCCC	1 cut(s)	104
PspPI	GGNCC	2 cut(s)	104, 105
RsaI	GTAC	4 cut(s)	206, 521, 568, 572
RsaNI	GTAC	4 cut(s)	205, 520, 567, 571
SaqAI	TTAA	1 cut(s)	470
SatI	GCNGC	3 cut(s)	144, 402, 441
Sau3AI	GATC	5 cut(s)	193, 217, 408, 421, 588
Sau96I	GGNCC	2 cut(s)	104, 105
ScaI	AGTACT	1 cut(s)	521
ScrFI	CCNGG	1 cut(s)	240
SduI	GDGCHC	3 cut(s)	108, 284, 437
SfaNI	GCATC	1 cut(s)	256
SmlI	CTYRAG	1 cut(s)	416
SmoI	CTYRAG	1 cut(s)	416
SnaBI	TACGTA	1 cut(s)	570
Sse9I	AATT	4 cut(s)	109, 290, 325, 593
SsiI	CCGC	2 cut(s)	101, 537
StyD4I	CCNGG	1 cut(s)	238
TaaI	ACNGT	1 cut(s)	465
TaiI	ACGT	1 cut(s)	572
TaqII	GACCGA	1 cut(s)	360
TasI	AATT	4 cut(s)	109, 290, 325, 593
TatI	WGTACW	1 cut(s)	519
TfiI	GAWTC	1 cut(s)	44
Tru1I	TTAA	1 cut(s)	470
Tru9I	TTAA	1 cut(s)	470
TscAI	CASTG	1 cut(s)	431
TseI	GCWGC	3 cut(s)	143, 401, 440
TspDTI	ATGAA	2 cut(s)	25, 249
TspGWI	ACGGA	1 cut(s)	186
TspRI	CASTG	1 cut(s)	431
XagI	CCTNNNNNAGG	1 cut(s)	212
XapI	RAATTY	1 cut(s)	290
ZrmI	AGTACT	1 cut(s)	521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.