RchiOBHm_Chr2g0100211

RTE1-HOMOLOG-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0005598
Physical Location & Seq
Reverse (-)
12197930 .. 12200163
2234 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47486

Sequence Viewer

Length: 684 bp
ATGGAAGCAAATGGAGACTCTGAGCACCACATGATGATTGATGGAAGTGCTTTACCGACTTTGCAAATTGACCCTAAAAGAGCCCGGTTTCCATGCTGCATTGTGTGGACACCGCTTCCTGTTATTTCATGGTTGATTCCTTTTGTTGGCCACATTGGCATCTGCAGAGAAGATGGTGTGATTTTGGACTTTGCAGGACCCAATTTTGTGTCCGTGGATGACTTTGCTTTTGGAGCACCAACTCGCTACATCCAAATAAGCAAAGAAAAGTGTTGTGCTATACCCTGTCCATCTGAGCATGAAGCAGTGTTGCATGATGATCCTGGAAGAGACATTTTGACATGGGATGATGCACTTCAGAAGGGCACACAGGAATTCCAACACCGGTCTTATAACCTTTTTACCTGCAATTGCCACTCTTTTGTAGCCAACAGCCTTAACAGGTTAAGCTTTCGTTCTGGTGGGTGGAATGTGGTGAACCTCGCAGCTCTCATCTTCCTTAAGGGTGAATGGGTAAGCGTAGGATCCATGGGGCGATCTTTTTTGCCATTTTTAATAACATTCAGTGTTGGACTTGCAATAGGAGGTGCAGCCTTCCTAACTTACTTAGGATTCTTCATCGCCTTCCTTGTTGGTTGGTTCCTTCTTGGTACTTACTGTTTCAAGAACTTGATCCAATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 map04016
Pfam Domains
Protein Families
DUF778

Protein Analysis

227

Amino Acids

25.22

Weight (kDa)

5.74

Isoelectric Point (pI)

28.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RTE1 PF05608 24 - 169 1.3e-68 RTE1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 393
Acc36I ACCTGC 1 cut(s) 413
AciI CCGC 1 cut(s) 113
AclWI GGATC 4 cut(s) 314, 519, 532, 667
AcoI YGGCCR 1 cut(s) 148
AcsI RAATTY 1 cut(s) 374
AcuI CTGAAG 1 cut(s) 341
AfaI GTAC 1 cut(s) 652
AfiI CCNNNNNNNGG 1 cut(s) 146
AflII CTTAAG 1 cut(s) 500
AgeI ACCGGT 1 cut(s) 384
AgsI TTSAA 1 cut(s) 664
AjnI CCWGG 1 cut(s) 322
AluBI AGCT 2 cut(s) 450, 488
AluI AGCT 2 cut(s) 450, 488
Alw21I GWGCWC 2 cut(s) 27, 238
Alw26I GTCTC 2 cut(s) 9, 324
AlwI GGATC 4 cut(s) 314, 519, 532, 667
AoxI GGCC 1 cut(s) 148
ApeKI GCWGC 3 cut(s) 96, 485, 590
ApoI RAATTY 1 cut(s) 374
ArsI GACNNNNNNTTYG 2 cut(s) 212, 244
AsiGI ACCGGT 1 cut(s) 384
AspS9I GGNCC 1 cut(s) 197
AsuC2I CCSGG 1 cut(s) 85
AsuHPI GGTGA 2 cut(s) 487, 518
AvaII GGWCC 1 cut(s) 197
BaeGI GKGCMC 1 cut(s) 368
BalI TGGCCA 1 cut(s) 150
BamHI GGATCC 1 cut(s) 524
BanII GRGCYC 1 cut(s) 85
Bbv12I GWGCWC 2 cut(s) 27, 238
BbvI GCAGC 3 cut(s) 83, 497, 602
BccI CCATC 3 cut(s) 35, 167, 298
BciT130I CCWGG 1 cut(s) 324
BcnI CCSGG 1 cut(s) 85
BcoDI GTCTC 2 cut(s) 9, 324
BfmI CTRYAG 1 cut(s) 163
BfrI CTTAAG 1 cut(s) 500
BfuAI ACCTGC 1 cut(s) 413
BglI GCCNNNNNGGC 1 cut(s) 156
BisI GCNGC 3 cut(s) 97, 486, 591
BlsI GCNGC 3 cut(s) 98, 487, 592
Bme1390I CCNGG 2 cut(s) 85, 324
Bme18I GGWCC 1 cut(s) 197
BmgT120I GGNCC 1 cut(s) 197
BmiI GGNNCC 3 cut(s) 199, 526, 641
BmrFI CCNGG 2 cut(s) 85, 324
BmsI GCATC 2 cut(s) 168, 340
BpuMI CCSGG 1 cut(s) 85
BsaJI CCNNGG 2 cut(s) 213, 528
BsaWI WCCGGW 1 cut(s) 384
Bsc4I CCNNNNNNNGG 1 cut(s) 146
Bse118I RCCGGY 1 cut(s) 384
BseBI CCWGG 1 cut(s) 324
BseDI CCNNGG 2 cut(s) 213, 528
BseGI GGATG 3 cut(s) 223, 249, 352
BseLI CCNNNNNNNGG 1 cut(s) 146
BseMII CTCAG 2 cut(s) 12, 285
BseSI GKGCMC 1 cut(s) 368
BseXI GCAGC 3 cut(s) 83, 497, 602
BsgI GTGCAG 1 cut(s) 609
BshFI GGCC 1 cut(s) 150
BshTI ACCGGT 1 cut(s) 384
BsiHKAI GWGCWC 2 cut(s) 27, 238
BsiSI CCGG 2 cut(s) 85, 385
BslI CCNNNNNNNGG 1 cut(s) 146
BsmAI GTCTC 2 cut(s) 9, 324
BsnI GGCC 1 cut(s) 150
Bsp1286I GDGCHC 4 cut(s) 27, 85, 238, 368
Bsp143I GATC 4 cut(s) 319, 524, 536, 672
Bsp19I CCATGG 1 cut(s) 528
BspACI CCGC 1 cut(s) 113
BspANI GGCC 1 cut(s) 150
BspCNI CTCAG 2 cut(s) 13, 286
BspLI GGNNCC 3 cut(s) 199, 526, 641
BspMAI CTGCAG 1 cut(s) 167
BspMI ACCTGC 1 cut(s) 413
BspPI GGATC 4 cut(s) 314, 519, 532, 667
BspTI CTTAAG 1 cut(s) 500
BsrFI RCCGGY 1 cut(s) 384
BssAI RCCGGY 1 cut(s) 384
BssECI CCNNGG 2 cut(s) 213, 528
BssMI GATC 4 cut(s) 319, 524, 536, 672
BssT1I CCWWGG 1 cut(s) 528
Bst2UI CCWGG 1 cut(s) 324
Bst4CI ACNGT 1 cut(s) 659
Bst6I CTCTTC 1 cut(s) 322
BstAFI CTTAAG 1 cut(s) 500
BstDEI CTNAG 3 cut(s) 21, 294, 607
BstDSI CCRYGG 2 cut(s) 213, 528
BstF5I GGATG 3 cut(s) 223, 249, 352
BstKTI GATC 4 cut(s) 322, 527, 539, 675
BstMAI GTCTC 2 cut(s) 9, 324
BstMBI GATC 4 cut(s) 319, 524, 536, 672
BstMWI GCNNNNNNNGC 2 cut(s) 156, 233
BstNI CCWGG 1 cut(s) 324
BstSCI CCNGG 2 cut(s) 83, 322
BstSFI CTRYAG 1 cut(s) 163
BstSLI GKGCMC 1 cut(s) 368
BstV1I GCAGC 3 cut(s) 83, 497, 602
BstX2I RGATCY 1 cut(s) 524
BstYI RGATCY 1 cut(s) 524
BsuRI GGCC 1 cut(s) 150
BtgI CCRYGG 2 cut(s) 213, 528
BtgZI GCGATG 1 cut(s) 604
BtsCI GGATG 3 cut(s) 223, 249, 352
BtsI GCAGTG 1 cut(s) 312
BtsIMutI CAGTG 2 cut(s) 312, 571
BveI ACCTGC 1 cut(s) 413
Cfr10I RCCGGY 1 cut(s) 384
Cfr13I GGNCC 1 cut(s) 197
Csp6I GTAC 1 cut(s) 651
CspAI ACCGGT 1 cut(s) 384
CviAII CATG 7 cut(s) 31, 93, 129, 299, 314, 342, 529
CviJI RGCY 7 cut(s) 83, 150, 428, 435, 450, 488, 593
CviKI_1 RGCY 7 cut(s) 83, 150, 428, 435, 450, 488, 593
CviQI GTAC 1 cut(s) 651
DdeI CTNAG 3 cut(s) 21, 294, 607
DpnI GATC 4 cut(s) 321, 526, 538, 674
DpnII GATC 4 cut(s) 319, 524, 536, 672
EaeI YGGCCR 1 cut(s) 148
Eam1104I CTCTTC 1 cut(s) 322
EarI CTCTTC 1 cut(s) 322
Eco130I CCWWGG 1 cut(s) 528
Eco24I GRGCYC 1 cut(s) 85
Eco47I GGWCC 1 cut(s) 197
Eco57I CTGAAG 1 cut(s) 341
EcoO109I RGGNCCY 1 cut(s) 197
EcoRI GAATTC 1 cut(s) 374
EcoRII CCWGG 1 cut(s) 322
EcoT14I CCWWGG 1 cut(s) 528
EcoT38I GRGCYC 1 cut(s) 85
ErhI CCWWGG 1 cut(s) 528
FaeI CATG 7 cut(s) 34, 96, 132, 302, 317, 345, 532
FaiI YATR 9 cut(s) 32, 94, 130, 281, 300, 315, 343, 393, 530
FatI CATG 7 cut(s) 30, 92, 128, 298, 313, 341, 528
Fnu4HI GCNGC 3 cut(s) 97, 486, 591
FokI GGATG 3 cut(s) 230, 236, 359
FriOI GRGCYC 1 cut(s) 85
Fsp4HI GCNGC 3 cut(s) 97, 486, 591
GluI GCNGC 3 cut(s) 97, 486, 591
HaeIII GGCC 1 cut(s) 150
HapII CCGG 2 cut(s) 85, 385
Hin1II CATG 7 cut(s) 34, 96, 132, 302, 317, 345, 532
HindIII AAGCTT 1 cut(s) 448
HinfI GANTC 3 cut(s) 17, 136, 612
HpaII CCGG 2 cut(s) 85, 385
HphI GGTGA 2 cut(s) 487, 518
Hpy166II GTNNAC 2 cut(s) 108, 478
Hpy188I TCNGA 3 cut(s) 22, 295, 360
Hpy188III TCNNGA 1 cut(s) 664
Hpy8I GTNNAC 2 cut(s) 108, 478
HpyAV CCTTC 4 cut(s) 355, 604, 634, 653
HpyCH4III ACNGT 1 cut(s) 659
HpyCH4V TGCA 9 cut(s) 64, 99, 165, 194, 313, 353, 408, 578, 590
HpyF10VI GCNNNNNNNGC 2 cut(s) 156, 233
HpyF3I CTNAG 3 cut(s) 21, 294, 607
Hsp92II CATG 7 cut(s) 34, 96, 132, 302, 317, 345, 532
Kzo9I GATC 4 cut(s) 319, 524, 536, 672
LmnI GCTCC 1 cut(s) 233
Lsp1109I GCAGC 3 cut(s) 83, 497, 602
LweI GCATC 2 cut(s) 168, 340
MalI GATC 4 cut(s) 321, 526, 538, 674
MboI GATC 4 cut(s) 319, 524, 536, 672
MboII GAAGA 4 cut(s) 182, 339, 487, 607
MfeI CAATTG 2 cut(s) 409, 677
MflI RGATCY 1 cut(s) 524
MhlI GDGCHC 4 cut(s) 27, 85, 238, 368
MlsI TGGCCA 1 cut(s) 150
MluCI AATT 5 cut(s) 66, 202, 374, 409, 677
MluNI TGGCCA 1 cut(s) 150
MlyI GAGTC 1 cut(s) 11
MmeI TCCRAC 2 cut(s) 403, 550
MnlI CCTC 2 cut(s) 491, 578
Mox20I TGGCCA 1 cut(s) 150
MscI TGGCCA 1 cut(s) 150
MseI TTAA 4 cut(s) 438, 446, 501, 554
Msp20I TGGCCA 1 cut(s) 150
MspCI CTTAAG 1 cut(s) 500
MspI CCGG 2 cut(s) 85, 385
MspR9I CCNGG 2 cut(s) 85, 324
MunI CAATTG 2 cut(s) 409, 677
MvaI CCWGG 1 cut(s) 324
MwoI GCNNNNNNNGC 2 cut(s) 156, 233
NciI CCSGG 1 cut(s) 85
NcoI CCATGG 1 cut(s) 528
NdeII GATC 4 cut(s) 319, 524, 536, 672
NlaIII CATG 7 cut(s) 34, 96, 132, 302, 317, 345, 532
NlaIV GGNNCC 3 cut(s) 199, 526, 641
PfeI GAWTC 2 cut(s) 136, 612
PfoI TCCNGGA 1 cut(s) 322
PinAI ACCGGT 1 cut(s) 384
PkrI GCNGC 3 cut(s) 98, 487, 592
PleI GAGTC 1 cut(s) 11
PpsI GAGTC 1 cut(s) 11
PpuMI RGGWCCY 1 cut(s) 197
PsiI TTATAA 1 cut(s) 393
Psp5II RGGWCCY 1 cut(s) 197
Psp6I CCWGG 1 cut(s) 322
PspGI CCWGG 1 cut(s) 322
PspN4I GGNNCC 3 cut(s) 199, 526, 641
PspPI GGNCC 1 cut(s) 197
PspPPI RGGWCCY 1 cut(s) 197
PstI CTGCAG 1 cut(s) 167
PsuI RGATCY 1 cut(s) 524
RsaI GTAC 1 cut(s) 652
RsaNI GTAC 1 cut(s) 651
SaqAI TTAA 4 cut(s) 438, 446, 501, 554
SatI GCNGC 3 cut(s) 97, 486, 591
Sau3AI GATC 4 cut(s) 319, 524, 536, 672
Sau96I GGNCC 1 cut(s) 197
SchI GAGTC 1 cut(s) 11
ScrFI CCNGG 2 cut(s) 85, 324
SduI GDGCHC 4 cut(s) 27, 85, 238, 368
SetI ASST 7 cut(s) 399, 407, 446, 452, 483, 490, 589
SfaNI GCATC 2 cut(s) 168, 340
SfcI CTRYAG 1 cut(s) 163
SinI GGWCC 1 cut(s) 197
SmlI CTYRAG 1 cut(s) 500
SmoI CTYRAG 1 cut(s) 500
Sse9I AATT 5 cut(s) 66, 202, 374, 409, 677
SsiI CCGC 1 cut(s) 113
StyD4I CCNGG 2 cut(s) 83, 322
StyI CCWWGG 1 cut(s) 528
TaaI ACNGT 1 cut(s) 659
TasI AATT 5 cut(s) 66, 202, 374, 409, 677
TfiI GAWTC 2 cut(s) 136, 612
Tru1I TTAA 4 cut(s) 438, 446, 501, 554
Tru9I TTAA 4 cut(s) 438, 446, 501, 554
TscAI CASTG 2 cut(s) 312, 571
TseI GCWGC 3 cut(s) 96, 485, 590
TspDTI ATGAA 3 cut(s) 117, 315, 607
TspGWI ACGGA 1 cut(s) 202
TspRI CASTG 2 cut(s) 312, 571
Vha464I CTTAAG 1 cut(s) 500
VpaK11BI GGWCC 1 cut(s) 197
XapI RAATTY 1 cut(s) 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.