FvH4_1g13540

Protein of unknown function (DUF1195)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0010021
Physical Location & Seq
Reverse (-)
7445323 .. 7448453
3131 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g13540.t1

Sequence Viewer

Length: 525 bp
ATGAAGGATGACGATGGCCTCCCGACGACGACGGCGGCGGCCAAGAAGGATAGCTCCGATTCGAGCCTCGGGAAAGGCAGGTACAAGTTCTGGGCATTGGCGGCGATTTTGCTCCTCGCGTTCTGGTCTATGTTCACCGGCACCGTCACGCTCCGGTGGTCCGCCGGCAACCTTAACCGCTTCTCCGACGAATTTGATTCCCCTATTCACGACGATCTCGATGTTCTCGAAATGGAGGAGAGGGAGAAGGTGGTGGAGCACATGTGGGATGTGTACACTAATAGCCGTCGGATCAGATTGCCCAGATTCTGGCAAGAGGCCTTTGAGGCTGCTTATGAGGACTTGACCAGTGACCTTCCTGGTGTTCGTGACTCTGCCATTTCCGAGATCGCCAAGATGTCTGTGCGATCCGTCGATCTGGATCCACCTCCGGTCCAATCTGCTAGTGCACGAGAATTTACAAAAGCACTGAAGCATCCAGATAAAGCTAGGGAACTCTTGCCCTCAACGAGCAGTGGTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1195

Protein Analysis

175

Amino Acids

19.63

Weight (kDa)

5.13

Isoelectric Point (pI)

45.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1195 PF06708 9 - 144 1.2e-74 Protein of unknown function (DUF1195)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 69
AccB1I GGYRCC 1 cut(s) 140
AccB7I CCANNNNNTGG 1 cut(s) 309
AccII CGCG 1 cut(s) 119
AciI CCGC 5 cut(s) 35, 38, 101, 162, 178
AclWI GGATC 4 cut(s) 299, 402, 416, 429
AcoI YGGCCR 1 cut(s) 39
AcsI RAATTY 2 cut(s) 191, 455
AcuI CTGAAG 1 cut(s) 491
AfaI GTAC 2 cut(s) 83, 275
AfiI CCNNNNNNNGG 1 cut(s) 309
AflIII ACRYGT 1 cut(s) 261
AjnI CCWGG 1 cut(s) 358
AluBI AGCT 2 cut(s) 54, 488
AluI AGCT 2 cut(s) 54, 488
Alw21I GWGCWC 2 cut(s) 261, 451
Alw44I GTGCAC 1 cut(s) 447
AlwI GGATC 4 cut(s) 299, 402, 416, 429
AlwNI CAGNNNCTG 1 cut(s) 309
Ama87I CYCGRG 1 cut(s) 68
AoxI GGCC 3 cut(s) 16, 39, 318
ApaLI GTGCAC 1 cut(s) 447
ApeKI GCWGC 1 cut(s) 329
ApoI RAATTY 2 cut(s) 191, 455
AspS9I GGNCC 2 cut(s) 159, 433
AsuHPI GGTGA 1 cut(s) 127
AvaI CYCGRG 1 cut(s) 68
AvaII GGWCC 2 cut(s) 159, 433
BaeGI GKGCMC 1 cut(s) 451
BamHI GGATCC 1 cut(s) 421
BanI GGYRCC 1 cut(s) 140
BauI CACGAG 1 cut(s) 450
Bbv12I GWGCWC 2 cut(s) 261, 451
BbvI GCAGC 1 cut(s) 316
BccI CCATC 1 cut(s) 8
BceAI ACGGC 2 cut(s) 48, 270
BciT130I CCWGG 1 cut(s) 360
BfaI CTAG 2 cut(s) 444, 489
BfuAI ACCTGC 1 cut(s) 69
BglI GCCNNNNNGGC 1 cut(s) 326
BisI GCNGC 4 cut(s) 36, 39, 102, 330
BlsI GCNGC 4 cut(s) 37, 40, 103, 331
Bme1390I CCNGG 1 cut(s) 360
Bme18I GGWCC 2 cut(s) 159, 433
BmeT110I CYCGRG 1 cut(s) 68
BmgT120I GGNCC 2 cut(s) 159, 433
BmiI GGNNCC 2 cut(s) 142, 423
BmrFI CCNGG 1 cut(s) 360
BmsI GCATC 1 cut(s) 484
BsaBI GATNNNNATC 1 cut(s) 420
BsaJI CCNNGG 1 cut(s) 67
BsaWI WCCGGW 2 cut(s) 153, 430
BsaXI ACNNNNNCTCC 4 cut(s) 167, 197, 248, 278
Bsc4I CCNNNNNNNGG 1 cut(s) 309
Bse118I RCCGGY 2 cut(s) 137, 164
Bse1I ACTGG 1 cut(s) 348
Bse8I GATNNNNATC 1 cut(s) 420
BseBI CCWGG 1 cut(s) 360
BseDI CCNNGG 1 cut(s) 67
BseGI GGATG 3 cut(s) 13, 274, 475
BseJI GATNNNNATC 1 cut(s) 420
BseLI CCNNNNNNNGG 1 cut(s) 309
BseNI ACTGG 1 cut(s) 348
BseRI GAGGAG 2 cut(s) 104, 251
BseSI GKGCMC 1 cut(s) 451
BseXI GCAGC 1 cut(s) 316
Bsh1236I CGCG 1 cut(s) 119
BshFI GGCC 3 cut(s) 18, 41, 320
BshNI GGYRCC 1 cut(s) 140
BsiHKAI GWGCWC 2 cut(s) 261, 451
BsiHKCI CYCGRG 1 cut(s) 68
BsiSI CCGG 4 cut(s) 138, 154, 165, 431
BslI CCNNNNNNNGG 1 cut(s) 309
BsnI GGCC 3 cut(s) 18, 41, 320
BsoBI CYCGRG 1 cut(s) 68
Bsp1286I GDGCHC 2 cut(s) 261, 451
Bsp1407I TGTACA 1 cut(s) 273
Bsp143I GATC 6 cut(s) 214, 291, 387, 407, 415, 421
BspACI CCGC 5 cut(s) 35, 38, 101, 162, 178
BspANI GGCC 3 cut(s) 18, 41, 320
BspFNI CGCG 1 cut(s) 119
BspLI GGNNCC 2 cut(s) 142, 423
BspMI ACCTGC 1 cut(s) 69
BspPI GGATC 4 cut(s) 299, 402, 416, 429
BspT107I GGYRCC 1 cut(s) 140
BsrFI RCCGGY 2 cut(s) 137, 164
BsrGI TGTACA 1 cut(s) 273
BsrI ACTGG 1 cut(s) 348
BssAI RCCGGY 2 cut(s) 137, 164
BssECI CCNNGG 1 cut(s) 67
BssMI GATC 6 cut(s) 214, 291, 387, 407, 415, 421
BssSI CACGAG 1 cut(s) 450
Bst2BI CACGAG 1 cut(s) 450
Bst2UI CCWGG 1 cut(s) 360
Bst4CI ACNGT 1 cut(s) 145
BstAUI TGTACA 1 cut(s) 273
BstC8I GCNNGC 1 cut(s) 166
BstF5I GGATG 3 cut(s) 13, 274, 475
BstFNI CGCG 1 cut(s) 119
BstKTI GATC 6 cut(s) 217, 294, 390, 410, 418, 424
BstMBI GATC 6 cut(s) 214, 291, 387, 407, 415, 421
BstMWI GCNNNNNNNGC 2 cut(s) 101, 326
BstNI CCWGG 1 cut(s) 360
BstNSI RCATGY 1 cut(s) 265
BstSCI CCNGG 1 cut(s) 358
BstSLI GKGCMC 1 cut(s) 451
BstUI CGCG 1 cut(s) 119
BstV1I GCAGC 1 cut(s) 316
BstX2I RGATCY 1 cut(s) 421
BstYI RGATCY 1 cut(s) 421
BsuRI GGCC 3 cut(s) 18, 41, 320
BtsCI GGATG 3 cut(s) 13, 274, 475
BtsI GCAGTG 1 cut(s) 520
BtsIMutI CAGTG 3 cut(s) 355, 467, 520
BveI ACCTGC 1 cut(s) 69
Cac8I GCNNGC 1 cut(s) 166
CaiI CAGNNNCTG 1 cut(s) 309
Cfr10I RCCGGY 2 cut(s) 137, 164
Cfr13I GGNCC 2 cut(s) 159, 433
Csp6I GTAC 2 cut(s) 82, 274
CviAII CATG 1 cut(s) 262
CviJI RGCY 8 cut(s) 18, 41, 54, 66, 285, 320, 329, 488
CviKI_1 RGCY 8 cut(s) 18, 41, 54, 66, 285, 320, 329, 488
CviQI GTAC 2 cut(s) 82, 274
DpnI GATC 6 cut(s) 216, 293, 389, 409, 417, 423
DpnII GATC 6 cut(s) 214, 291, 387, 407, 415, 421
EaeI YGGCCR 1 cut(s) 39
EciI GGCGGA 1 cut(s) 151
Eco147I AGGCCT 1 cut(s) 320
Eco47I GGWCC 2 cut(s) 159, 433
Eco57I CTGAAG 1 cut(s) 491
Eco88I CYCGRG 1 cut(s) 68
EcoRII CCWGG 1 cut(s) 358
FaeI CATG 1 cut(s) 265
FaiI YATR 3 cut(s) 131, 263, 336
FatI CATG 1 cut(s) 261
Fnu4HI GCNGC 4 cut(s) 36, 39, 102, 330
FokI GGATG 3 cut(s) 20, 281, 462
Fsp4HI GCNGC 4 cut(s) 36, 39, 102, 330
FspBI CTAG 2 cut(s) 444, 489
GluI GCNGC 4 cut(s) 36, 39, 102, 330
HaeIII GGCC 3 cut(s) 18, 41, 320
HapII CCGG 4 cut(s) 138, 154, 165, 431
Hin1II CATG 1 cut(s) 265
HinfI GANTC 4 cut(s) 59, 197, 306, 371
HpaII CCGG 4 cut(s) 138, 154, 165, 431
HphI GGTGA 1 cut(s) 127
Hpy166II GTNNAC 4 cut(s) 135, 274, 276, 449
Hpy188I TCNGA 5 cut(s) 58, 187, 291, 296, 385
Hpy188III TCNNGA 8 cut(s) 22, 70, 209, 218, 227, 368, 419, 479
Hpy8I GTNNAC 4 cut(s) 135, 274, 276, 449
Hpy99I CGWCG 7 cut(s) 28, 31, 34, 191, 215, 291, 416
HpyAV CCTTC 3 cut(s) 40, 241, 365
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4V TGCA 1 cut(s) 449
HpyF10VI GCNNNNNNNGC 2 cut(s) 101, 326
Hsp92II CATG 1 cut(s) 265
KroI GCCGGC 1 cut(s) 164
KroNI GCCGGC 1 cut(s) 166
Kzo9I GATC 6 cut(s) 214, 291, 387, 407, 415, 421
LmnI GCTCC 4 cut(s) 59, 117, 156, 256
Lsp1109I GCAGC 1 cut(s) 316
LweI GCATC 1 cut(s) 484
MaeI CTAG 2 cut(s) 444, 489
MaeIII GTNAC 3 cut(s) 145, 350, 368
MalI GATC 6 cut(s) 216, 293, 389, 409, 417, 423
MboI GATC 6 cut(s) 214, 291, 387, 407, 415, 421
MflI RGATCY 1 cut(s) 421
MhlI GDGCHC 2 cut(s) 261, 451
MluCI AATT 2 cut(s) 191, 455
MlyI GAGTC 1 cut(s) 365
MmeI TCCRAC 2 cut(s) 210, 269
MroNI GCCGGC 1 cut(s) 164
MseI TTAA 1 cut(s) 174
MspI CCGG 4 cut(s) 138, 154, 165, 431
MspR9I CCNGG 1 cut(s) 360
MvaI CCWGG 1 cut(s) 360
MvnI CGCG 1 cut(s) 119
MwoI GCNNNNNNNGC 2 cut(s) 101, 326
NaeI GCCGGC 1 cut(s) 166
NdeII GATC 6 cut(s) 214, 291, 387, 407, 415, 421
NgoMIV GCCGGC 1 cut(s) 164
NlaIII CATG 1 cut(s) 265
NlaIV GGNNCC 2 cut(s) 142, 423
NmuCI GTSAC 3 cut(s) 145, 350, 368
NspI RCATGY 1 cut(s) 265
PceI AGGCCT 1 cut(s) 320
PciI ACATGT 1 cut(s) 261
PcsI WCGNNNNNNNCGW 2 cut(s) 216, 225
PdiI GCCGGC 1 cut(s) 166
PfeI GAWTC 3 cut(s) 59, 197, 306
PflMI CCANNNNNTGG 1 cut(s) 309
PkrI GCNGC 4 cut(s) 37, 40, 103, 331
PleI GAGTC 1 cut(s) 365
PpsI GAGTC 1 cut(s) 365
PscI ACATGT 1 cut(s) 261
Psp6I CCWGG 1 cut(s) 358
PspGI CCWGG 1 cut(s) 358
PspN4I GGNNCC 2 cut(s) 142, 423
PspPI GGNCC 2 cut(s) 159, 433
PstNI CAGNNNCTG 1 cut(s) 309
PsuI RGATCY 1 cut(s) 421
RsaI GTAC 2 cut(s) 83, 275
RsaNI GTAC 2 cut(s) 82, 274
SaqAI TTAA 1 cut(s) 174
SatI GCNGC 4 cut(s) 36, 39, 102, 330
Sau3AI GATC 6 cut(s) 214, 291, 387, 407, 415, 421
Sau96I GGNCC 2 cut(s) 159, 433
SchI GAGTC 1 cut(s) 365
ScrFI CCNGG 1 cut(s) 360
SduI GDGCHC 2 cut(s) 261, 451
SetI ASST 7 cut(s) 56, 83, 174, 252, 357, 430, 490
SfaNI GCATC 1 cut(s) 484
SinI GGWCC 2 cut(s) 159, 433
Sse9I AATT 2 cut(s) 191, 455
SseBI AGGCCT 1 cut(s) 320
SsiI CCGC 5 cut(s) 35, 38, 101, 162, 178
SspMI CTAG 2 cut(s) 444, 489
StuI AGGCCT 1 cut(s) 320
StyD4I CCNGG 1 cut(s) 358
TaaI ACNGT 1 cut(s) 145
TaqI TCGA 5 cut(s) 62, 219, 228, 414, 520
TasI AATT 2 cut(s) 191, 455
TatI WGTACW 1 cut(s) 273
TauI GCSGC 3 cut(s) 38, 41, 104
TfiI GAWTC 3 cut(s) 59, 197, 306
Tru1I TTAA 1 cut(s) 174
Tru9I TTAA 1 cut(s) 174
TscAI CASTG 3 cut(s) 355, 474, 520
TseFI GTSAC 3 cut(s) 145, 350, 368
TseI GCWGC 1 cut(s) 329
Tsp45I GTSAC 3 cut(s) 145, 350, 368
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 400
TspRI CASTG 3 cut(s) 355, 474, 520
Van91I CCANNNNNTGG 1 cut(s) 309
VneI GTGCAC 1 cut(s) 447
VpaK11BI GGWCC 2 cut(s) 159, 433
XapI RAATTY 2 cut(s) 191, 455
XceI RCATGY 1 cut(s) 265
XspI CTAG 2 cut(s) 444, 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.