Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8223816.1

Orthogroup ID

OG0010021

Physical Location & Seq

Genomic Coordinates Forward (+)

139 .. 744

Gene Structure 606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8223816.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

atgaaggatgacgatggccttccgacgacggcggcgggcggcgggaagagggagagctccgattcgggcctagtactcgggaaaggcaggtacaagttctgggcactggcggcgattttgctgctggcgttctggtcaatgttcaccggcaccgtcacgctccggtggtcggccgggaaccttaatcgcttctccgacgaatttgattcccctattcacgacgatctcgacgtcctcgaaatggaggagagggagagggtggtggagcacatgtgggatgtgtacactaatagccgtcggatcagattacccagattctggcaggaggcctttgaggctgcttatgaggacttgaccagtgacctccctggtgttcgtgactctgccatttccgagatcgccaagatgtcggtgcggtcagtcgatctcgatccacctccggtccaatctgctgtgagtaccggcccctttgtgtttttttccttagctattcaagcatattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1195

Protein Analysis

167

Amino Acids

18.74

Weight (kDa)

4.67

Isoelectric Point (pI)

48.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36660 AT5G65650
fragaria_vesca	FvH4_1g13540
malus_domestica	MD02G1150600.v1.1 MD15G1265200.v1.1
prunus_persica	Prupe.7G152400_v2.0.a1 Prupe.7G152400_v2.0.a1
pyrus_communis	pycom02g11830 pycom15g23100
rosa_chinensis	RchiOBHm_Chr2g0101931
rosa_laevigata	RLG00000017117
rosa_multiflora	Rmu_co8223816.1_g000001 Rmu_sc0010781.1_g000004 Rmu_sc0012270.1_g000007
rosa_roxburghii	Rroxscaffold_2G00140940
rosa_rugosa	Rorug02G0103200
rosa_samantha	Rh2AG151200 Rh2BG156700 Rh2CG156500 Rh2DG156800
rosa_wichuraiana	Rw2G011800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	234
Acc36I	ACCTGC	1 cut(s)	78
AccB1I	GGYRCC	1 cut(s)	149
AccB7I	CCANNNNNTGG	1 cut(s)	318
AciI	CCGC	6 cut(s)	32, 35, 39, 42, 110, 415
AclWI	GGATC	2 cut(s)	308, 425
AcoI	YGGCCR	1 cut(s)	171
AcsI	RAATTY	1 cut(s)	200
AcyI	GRCGYC	1 cut(s)	231
AfaI	GTAC	4 cut(s)	75, 92, 284, 460
AfiI	CCNNNNNNNGG	3 cut(s)	169, 241, 318
AflIII	ACRYGT	1 cut(s)	270
AgsI	TTSAA	1 cut(s)	494
AjnI	CCWGG	1 cut(s)	367
AluBI	AGCT	2 cut(s)	57, 488
AluI	AGCT	2 cut(s)	57, 488
Alw21I	GWGCWC	2 cut(s)	59, 270
AlwI	GGATC	2 cut(s)	308, 425
AlwNI	CAGNNNCTG	1 cut(s)	318
Ama87I	CYCGRG	1 cut(s)	77
AoxI	GGCC	5 cut(s)	16, 67, 171, 327, 463
ApeKI	GCWGC	2 cut(s)	121, 338
ApoI	RAATTY	1 cut(s)	200
AspS9I	GGNCC	3 cut(s)	67, 442, 464
AsuC2I	CCSGG	1 cut(s)	175
AsuHPI	GGTGA	1 cut(s)	136
AvaI	CYCGRG	1 cut(s)	77
AvaII	GGWCC	1 cut(s)	442
BaeGI	GKGCMC	1 cut(s)	106
BanI	GGYRCC	1 cut(s)	149
BanII	GRGCYC	1 cut(s)	59
Bbv12I	GWGCWC	2 cut(s)	59, 270
BbvI	GCAGC	2 cut(s)	108, 325
BccI	CCATC	1 cut(s)	8
BceAI	ACGGC	2 cut(s)	45, 279
BcgI	CGANNNNNNTGC	2 cut(s)	103, 137
BciT130I	CCWGG	1 cut(s)	369
BcnI	CCSGG	1 cut(s)	175
BfaI	CTAG	1 cut(s)	71
BfuAI	ACCTGC	1 cut(s)	78
BglI	GCCNNNNNGGC	1 cut(s)	335
BisI	GCNGC	5 cut(s)	33, 40, 111, 122, 339
BlsI	GCNGC	5 cut(s)	34, 41, 112, 123, 340
BmcAI	AGTACT	1 cut(s)	75
Bme1390I	CCNGG	2 cut(s)	175, 369
Bme18I	GGWCC	1 cut(s)	442
BmeT110I	CYCGRG	1 cut(s)	77
BmgT120I	GGNCC	3 cut(s)	67, 442, 464
BmiI	GGNNCC	3 cut(s)	151, 179, 466
BmrFI	CCNGG	2 cut(s)	175, 369
Bpu10I	CCTNAGC	1 cut(s)	484
BpuMI	CCSGG	1 cut(s)	175
BsaBI	GATNNNNATC	1 cut(s)	429
BsaHI	GRCGYC	1 cut(s)	231
BsaJI	CCNNGG	1 cut(s)	367
BsaWI	WCCGGW	2 cut(s)	162, 439
BsaXI	ACNNNNNCTCC	2 cut(s)	257, 287
Bsc4I	CCNNNNNNNGG	3 cut(s)	169, 241, 318
Bse118I	RCCGGY	2 cut(s)	146, 461
Bse1I	ACTGG	2 cut(s)	111, 357
Bse8I	GATNNNNATC	1 cut(s)	429
BseBI	CCWGG	1 cut(s)	369
BseDI	CCNNGG	1 cut(s)	367
BseGI	GGATG	2 cut(s)	13, 283
BseJI	GATNNNNATC	1 cut(s)	429
BseLI	CCNNNNNNNGG	3 cut(s)	169, 241, 318
BseNI	ACTGG	2 cut(s)	111, 357
BseRI	GAGGAG	1 cut(s)	260
BseSI	GKGCMC	1 cut(s)	106
BseX3I	CGGCCG	1 cut(s)	171
BseXI	GCAGC	2 cut(s)	108, 325
Bsh1285I	CGRYCG	1 cut(s)	174
BshFI	GGCC	5 cut(s)	18, 69, 173, 329, 465
BshNI	GGYRCC	1 cut(s)	149
BsiEI	CGRYCG	1 cut(s)	174
BsiHKAI	GWGCWC	2 cut(s)	59, 270
BsiHKCI	CYCGRG	1 cut(s)	77
BsiSI	CCGG	5 cut(s)	147, 163, 174, 440, 462
BslI	CCNNNNNNNGG	3 cut(s)	169, 241, 318
BsnI	GGCC	5 cut(s)	18, 69, 173, 329, 465
BsoBI	CYCGRG	1 cut(s)	77
Bsp1286I	GDGCHC	3 cut(s)	59, 106, 270
Bsp1407I	TGTACA	1 cut(s)	282
Bsp143I	GATC	5 cut(s)	223, 300, 396, 424, 430
BspACI	CCGC	6 cut(s)	32, 35, 39, 42, 110, 415
BspANI	GGCC	5 cut(s)	18, 69, 173, 329, 465
BspLI	GGNNCC	3 cut(s)	151, 179, 466
BspMI	ACCTGC	1 cut(s)	78
BspPI	GGATC	2 cut(s)	308, 425
BspT107I	GGYRCC	1 cut(s)	149
BsrFI	RCCGGY	2 cut(s)	146, 461
BsrGI	TGTACA	1 cut(s)	282
BsrI	ACTGG	2 cut(s)	111, 357
BssAI	RCCGGY	2 cut(s)	146, 461
BssECI	CCNNGG	1 cut(s)	367
BssMI	GATC	5 cut(s)	223, 300, 396, 424, 430
BssNI	GRCGYC	1 cut(s)	231
Bst2UI	CCWGG	1 cut(s)	369
Bst4CI	ACNGT	1 cut(s)	154
Bst6I	CTCTTC	1 cut(s)	41
BstACI	GRCGYC	1 cut(s)	231
BstAUI	TGTACA	1 cut(s)	282
BstC8I	GCNNGC	2 cut(s)	37, 126
BstDEI	CTNAG	1 cut(s)	484
BstF5I	GGATG	2 cut(s)	13, 283
BstKTI	GATC	5 cut(s)	226, 303, 399, 427, 433
BstMBI	GATC	5 cut(s)	223, 300, 396, 424, 430
BstMCI	CGRYCG	1 cut(s)	174
BstMWI	GCNNNNNNNGC	3 cut(s)	110, 335, 494
BstNI	CCWGG	1 cut(s)	369
BstNSI	RCATGY	1 cut(s)	274
BstSCI	CCNGG	2 cut(s)	173, 367
BstSLI	GKGCMC	1 cut(s)	106
BstV1I	GCAGC	2 cut(s)	108, 325
BstZI	CGGCCG	1 cut(s)	171
BsuRI	GGCC	5 cut(s)	18, 69, 173, 329, 465
BtsCI	GGATG	2 cut(s)	13, 283
BtsIMutI	CAGTG	2 cut(s)	104, 364
BveI	ACCTGC	1 cut(s)	78
Cac8I	GCNNGC	2 cut(s)	37, 126
CaiI	CAGNNNCTG	1 cut(s)	318
Cfr10I	RCCGGY	2 cut(s)	146, 461
Cfr13I	GGNCC	3 cut(s)	67, 442, 464
Csp6I	GTAC	4 cut(s)	74, 91, 283, 459
CviAII	CATG	1 cut(s)	271
CviJI	RGCY	9 cut(s)	18, 57, 69, 173, 294, 329, 338, 465, 488
CviKI_1	RGCY	9 cut(s)	18, 57, 69, 173, 294, 329, 338, 465, 488
CviQI	GTAC	4 cut(s)	74, 91, 283, 459
DdeI	CTNAG	1 cut(s)	484
DpnI	GATC	5 cut(s)	225, 302, 398, 426, 432
DpnII	GATC	5 cut(s)	223, 300, 396, 424, 430
EaeI	YGGCCR	1 cut(s)	171
EagI	CGGCCG	1 cut(s)	171
Eam1104I	CTCTTC	1 cut(s)	41
EarI	CTCTTC	1 cut(s)	41
Ecl136II	GAGCTC	1 cut(s)	57
EclXI	CGGCCG	1 cut(s)	171
Eco147I	AGGCCT	1 cut(s)	329
Eco24I	GRGCYC	1 cut(s)	59
Eco47I	GGWCC	1 cut(s)	442
Eco52I	CGGCCG	1 cut(s)	171
Eco53kI	GAGCTC	1 cut(s)	57
Eco88I	CYCGRG	1 cut(s)	77
EcoICRI	GAGCTC	1 cut(s)	57
EcoRII	CCWGG	1 cut(s)	367
EcoT38I	GRGCYC	1 cut(s)	59
FaeI	CATG	1 cut(s)	274
FaiI	YATR	3 cut(s)	272, 345, 499
FatI	CATG	1 cut(s)	270
FauI	CCCGC	2 cut(s)	28, 35
Fnu4HI	GCNGC	5 cut(s)	33, 40, 111, 122, 339
FokI	GGATG	2 cut(s)	20, 290
FriOI	GRGCYC	1 cut(s)	59
Fsp4HI	GCNGC	5 cut(s)	33, 40, 111, 122, 339
FspBI	CTAG	1 cut(s)	71
GluI	GCNGC	5 cut(s)	33, 40, 111, 122, 339
HaeIII	GGCC	5 cut(s)	18, 69, 173, 329, 465
HapII	CCGG	5 cut(s)	147, 163, 174, 440, 462
Hin1I	GRCGYC	1 cut(s)	231
Hin1II	CATG	1 cut(s)	274
HinfI	GANTC	4 cut(s)	62, 206, 315, 380
HpaII	CCGG	5 cut(s)	147, 163, 174, 440, 462
HphI	GGTGA	1 cut(s)	136
Hpy166II	GTNNAC	3 cut(s)	144, 283, 285
Hpy188I	TCNGA	6 cut(s)	24, 61, 196, 300, 305, 394
Hpy188III	TCNNGA	5 cut(s)	79, 218, 227, 377, 428
Hpy8I	GTNNAC	3 cut(s)	144, 283, 285
Hpy99I	CGWCG	6 cut(s)	28, 31, 200, 224, 233, 300
HpyAV	CCTTC	1 cut(s)	29
HpyCH4III	ACNGT	1 cut(s)	154
HpyCH4IV	ACGT	1 cut(s)	231
HpyF10VI	GCNNNNNNNGC	3 cut(s)	110, 335, 494
HpyF3I	CTNAG	1 cut(s)	484
HpySE526I	ACGT	1 cut(s)	231
Hsp92I	GRCGYC	1 cut(s)	231
Hsp92II	CATG	1 cut(s)	274
Kzo9I	GATC	5 cut(s)	223, 300, 396, 424, 430
LmnI	GCTCC	3 cut(s)	62, 165, 265
Lsp1109I	GCAGC	2 cut(s)	108, 325
MaeI	CTAG	1 cut(s)	71
MaeII	ACGT	1 cut(s)	231
MaeIII	GTNAC	3 cut(s)	154, 359, 377
MalI	GATC	5 cut(s)	225, 302, 398, 426, 432
MboI	GATC	5 cut(s)	223, 300, 396, 424, 430
MboII	GAAGA	1 cut(s)	58
MhlI	GDGCHC	3 cut(s)	59, 106, 270
MluCI	AATT	1 cut(s)	200
MlyI	GAGTC	1 cut(s)	374
MmeI	TCCRAC	3 cut(s)	47, 219, 278
MseI	TTAA	1 cut(s)	183
MspI	CCGG	5 cut(s)	147, 163, 174, 440, 462
MspR9I	CCNGG	2 cut(s)	175, 369
MvaI	CCWGG	1 cut(s)	369
MwoI	GCNNNNNNNGC	3 cut(s)	110, 335, 494
NciI	CCSGG	1 cut(s)	175
NdeII	GATC	5 cut(s)	223, 300, 396, 424, 430
NlaIII	CATG	1 cut(s)	274
NlaIV	GGNNCC	3 cut(s)	151, 179, 466
NmuCI	GTSAC	3 cut(s)	154, 359, 377
NspI	RCATGY	1 cut(s)	274
PceI	AGGCCT	1 cut(s)	329
PciI	ACATGT	1 cut(s)	270
PcsI	WCGNNNNNNNCGW	3 cut(s)	225, 228, 234
PfeI	GAWTC	3 cut(s)	62, 206, 315
PflMI	CCANNNNNTGG	1 cut(s)	318
PkrI	GCNGC	5 cut(s)	34, 41, 112, 123, 340
PleI	GAGTC	1 cut(s)	374
PpsI	GAGTC	1 cut(s)	374
PscI	ACATGT	1 cut(s)	270
Psp124BI	GAGCTC	1 cut(s)	59
Psp6I	CCWGG	1 cut(s)	367
PspGI	CCWGG	1 cut(s)	367
PspN4I	GGNNCC	3 cut(s)	151, 179, 466
PspPI	GGNCC	3 cut(s)	67, 442, 464
PstNI	CAGNNNCTG	1 cut(s)	318
RsaI	GTAC	4 cut(s)	75, 92, 284, 460
RsaNI	GTAC	4 cut(s)	74, 91, 283, 459
SacI	GAGCTC	1 cut(s)	59
SaqAI	TTAA	1 cut(s)	183
SatI	GCNGC	5 cut(s)	33, 40, 111, 122, 339
Sau3AI	GATC	5 cut(s)	223, 300, 396, 424, 430
Sau96I	GGNCC	3 cut(s)	67, 442, 464
ScaI	AGTACT	1 cut(s)	75
SchI	GAGTC	1 cut(s)	374
ScrFI	CCNGG	2 cut(s)	175, 369
SduI	GDGCHC	3 cut(s)	59, 106, 270
SetI	ASST	7 cut(s)	59, 92, 183, 234, 366, 439, 490
SinI	GGWCC	1 cut(s)	442
Sse9I	AATT	1 cut(s)	200
SseBI	AGGCCT	1 cut(s)	329
SsiI	CCGC	6 cut(s)	32, 35, 39, 42, 110, 415
SspMI	CTAG	1 cut(s)	71
SstI	GAGCTC	1 cut(s)	59
StuI	AGGCCT	1 cut(s)	329
StyD4I	CCNGG	2 cut(s)	173, 367
TaaI	ACNGT	1 cut(s)	154
TaiI	ACGT	1 cut(s)	234
TaqI	TCGA	4 cut(s)	228, 237, 423, 429
TasI	AATT	1 cut(s)	200
TatI	WGTACW	2 cut(s)	73, 282
TauI	GCSGC	3 cut(s)	35, 42, 113
TfiI	GAWTC	3 cut(s)	62, 206, 315
Tru1I	TTAA	1 cut(s)	183
Tru9I	TTAA	1 cut(s)	183
TscAI	CASTG	2 cut(s)	111, 364
TseFI	GTSAC	3 cut(s)	154, 359, 377
TseI	GCWGC	2 cut(s)	121, 338
Tsp45I	GTSAC	3 cut(s)	154, 359, 377
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	111, 364
Van91I	CCANNNNNTGG	1 cut(s)	318
VpaK11BI	GGWCC	1 cut(s)	442
XapI	RAATTY	1 cut(s)	200
XceI	RCATGY	1 cut(s)	274
XspI	CTAG	1 cut(s)	71
ZraI	GACGTC	1 cut(s)	232
ZrmI	AGTACT	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.