Rh2CG156500

Protein of unknown function (DUF1195)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0010021
Physical Location & Seq
Reverse (-)
13581246 .. 13582400
1155 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG156500.1

Sequence Viewer

Length: 588 bp
ATGAAGGATGACGATGGCCTTCCGACGACGGCGGCGGGCGGCGGGAAGAGGGAGAGCTCCGATTCGAGCCTAGTACTCGGGAAAGGCAGGTACAAGTTCTGGGCACTGGCGGCGATTTTGCTGCTGGCGTTCTGGTCAATGTTCACCGGCACCGTCACGCTCCGGTGGTCGGCCGGGAACCTTAATCGCTTCTCCGACGAATTTGATTCCCCTATTCACGACGATCTCGACGTCCTCGAAATGGAGGAGAGGGAGAGGGTGGTGGAGCACATGTGGGATGTGTACACTAATAGCCGTCGGATCAGATTACCCAGATTCTGGCAGGAGGCCTTTGAGGCTGCTTATGAGGACTTGACCAGTGACCTCCCTGGTGTTCGTGACTCTGCCATTTCCGAGATCGCCAAGATGTCGGTGCGGTCAGTCGATCTCGATCCACCTCCGGTCCAATCTGCTGTGAGTACCGGCCCCTTTGTGTTTTTTTTCCTTAGCTATTCAAGCATATTGAAACTACATTGTTGTTTAGGAAGTTCGATATTCCAATTAGGAAGTACATTCAAGGATTGGGTTGGTGAATTGTTTGTTAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1195

Protein Analysis

195

Amino Acids

21.92

Weight (kDa)

4.8

Isoelectric Point (pI)

45.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1195 PF06708 10 - 147 9.7e-74 Protein of unknown function (DUF1195)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 234
Acc36I ACCTGC 1 cut(s) 78
AccB1I GGYRCC 1 cut(s) 149
AccB7I CCANNNNNTGG 1 cut(s) 318
AciI CCGC 6 cut(s) 32, 35, 39, 42, 110, 415
AclWI GGATC 2 cut(s) 308, 425
AcoI YGGCCR 1 cut(s) 171
AcsI RAATTY 1 cut(s) 200
AcyI GRCGYC 1 cut(s) 231
AfaI GTAC 5 cut(s) 75, 92, 284, 460, 550
AfiI CCNNNNNNNGG 3 cut(s) 169, 241, 318
AflIII ACRYGT 1 cut(s) 270
AgsI TTSAA 3 cut(s) 495, 505, 556
AjnI CCWGG 1 cut(s) 367
AluBI AGCT 2 cut(s) 57, 489
AluI AGCT 2 cut(s) 57, 489
Alw21I GWGCWC 2 cut(s) 59, 270
AlwI GGATC 2 cut(s) 308, 425
AlwNI CAGNNNCTG 1 cut(s) 318
Ama87I CYCGRG 1 cut(s) 77
AoxI GGCC 4 cut(s) 16, 171, 327, 463
ApeKI GCWGC 2 cut(s) 121, 338
ApoI RAATTY 1 cut(s) 200
AspS9I GGNCC 2 cut(s) 442, 464
AsuC2I CCSGG 1 cut(s) 175
AsuHPI GGTGA 2 cut(s) 136, 581
AvaI CYCGRG 1 cut(s) 77
AvaII GGWCC 1 cut(s) 442
BaeGI GKGCMC 1 cut(s) 106
BanI GGYRCC 1 cut(s) 149
BanII GRGCYC 1 cut(s) 59
Bbv12I GWGCWC 2 cut(s) 59, 270
BbvI GCAGC 2 cut(s) 108, 325
BccI CCATC 1 cut(s) 8
BceAI ACGGC 2 cut(s) 45, 279
BcgI CGANNNNNNTGC 2 cut(s) 103, 137
BciT130I CCWGG 1 cut(s) 369
BcnI CCSGG 1 cut(s) 175
BfaI CTAG 1 cut(s) 71
BfuAI ACCTGC 1 cut(s) 78
BglI GCCNNNNNGGC 1 cut(s) 335
BisI GCNGC 5 cut(s) 33, 40, 111, 122, 339
BlsI GCNGC 5 cut(s) 34, 41, 112, 123, 340
BmcAI AGTACT 1 cut(s) 75
Bme1390I CCNGG 2 cut(s) 175, 369
Bme18I GGWCC 1 cut(s) 442
BmeT110I CYCGRG 1 cut(s) 77
BmgT120I GGNCC 2 cut(s) 442, 464
BmiI GGNNCC 3 cut(s) 151, 179, 466
BmrFI CCNGG 2 cut(s) 175, 369
Bpu10I CCTNAGC 1 cut(s) 485
BpuMI CCSGG 1 cut(s) 175
BsaBI GATNNNNATC 1 cut(s) 429
BsaHI GRCGYC 1 cut(s) 231
BsaJI CCNNGG 1 cut(s) 367
BsaWI WCCGGW 2 cut(s) 162, 439
BsaXI ACNNNNNCTCC 2 cut(s) 257, 287
Bsc4I CCNNNNNNNGG 3 cut(s) 169, 241, 318
Bse118I RCCGGY 2 cut(s) 146, 461
Bse1I ACTGG 2 cut(s) 111, 357
Bse8I GATNNNNATC 1 cut(s) 429
BseBI CCWGG 1 cut(s) 369
BseDI CCNNGG 1 cut(s) 367
BseGI GGATG 2 cut(s) 13, 283
BseJI GATNNNNATC 1 cut(s) 429
BseLI CCNNNNNNNGG 3 cut(s) 169, 241, 318
BseNI ACTGG 2 cut(s) 111, 357
BseRI GAGGAG 1 cut(s) 260
BseSI GKGCMC 1 cut(s) 106
BseX3I CGGCCG 1 cut(s) 171
BseXI GCAGC 2 cut(s) 108, 325
Bsh1285I CGRYCG 1 cut(s) 174
BshFI GGCC 4 cut(s) 18, 173, 329, 465
BshNI GGYRCC 1 cut(s) 149
BsiEI CGRYCG 1 cut(s) 174
BsiHKAI GWGCWC 2 cut(s) 59, 270
BsiHKCI CYCGRG 1 cut(s) 77
BsiSI CCGG 5 cut(s) 147, 163, 174, 440, 462
BslI CCNNNNNNNGG 3 cut(s) 169, 241, 318
BsnI GGCC 4 cut(s) 18, 173, 329, 465
BsoBI CYCGRG 1 cut(s) 77
Bsp1286I GDGCHC 3 cut(s) 59, 106, 270
Bsp1407I TGTACA 1 cut(s) 282
Bsp143I GATC 5 cut(s) 223, 300, 396, 424, 430
BspACI CCGC 6 cut(s) 32, 35, 39, 42, 110, 415
BspANI GGCC 4 cut(s) 18, 173, 329, 465
BspLI GGNNCC 3 cut(s) 151, 179, 466
BspMI ACCTGC 1 cut(s) 78
BspPI GGATC 2 cut(s) 308, 425
BspT107I GGYRCC 1 cut(s) 149
BsrFI RCCGGY 2 cut(s) 146, 461
BsrGI TGTACA 1 cut(s) 282
BsrI ACTGG 2 cut(s) 111, 357
BssAI RCCGGY 2 cut(s) 146, 461
BssECI CCNNGG 1 cut(s) 367
BssMI GATC 5 cut(s) 223, 300, 396, 424, 430
BssNI GRCGYC 1 cut(s) 231
Bst2UI CCWGG 1 cut(s) 369
Bst4CI ACNGT 1 cut(s) 154
Bst6I CTCTTC 1 cut(s) 41
BstACI GRCGYC 1 cut(s) 231
BstAUI TGTACA 1 cut(s) 282
BstC8I GCNNGC 2 cut(s) 37, 126
BstDEI CTNAG 1 cut(s) 485
BstF5I GGATG 2 cut(s) 13, 283
BstKTI GATC 5 cut(s) 226, 303, 399, 427, 433
BstMBI GATC 5 cut(s) 223, 300, 396, 424, 430
BstMCI CGRYCG 1 cut(s) 174
BstMWI GCNNNNNNNGC 3 cut(s) 110, 335, 495
BstNI CCWGG 1 cut(s) 369
BstNSI RCATGY 1 cut(s) 274
BstSCI CCNGG 2 cut(s) 173, 367
BstSLI GKGCMC 1 cut(s) 106
BstV1I GCAGC 2 cut(s) 108, 325
BstZI CGGCCG 1 cut(s) 171
BsuRI GGCC 4 cut(s) 18, 173, 329, 465
BtsCI GGATG 2 cut(s) 13, 283
BtsIMutI CAGTG 2 cut(s) 104, 364
BveI ACCTGC 1 cut(s) 78
Cac8I GCNNGC 2 cut(s) 37, 126
CaiI CAGNNNCTG 1 cut(s) 318
Cfr10I RCCGGY 2 cut(s) 146, 461
Cfr13I GGNCC 2 cut(s) 442, 464
Csp6I GTAC 5 cut(s) 74, 91, 283, 459, 549
CviAII CATG 1 cut(s) 271
CviJI RGCY 9 cut(s) 18, 57, 69, 173, 294, 329, 338, 465, 489
CviKI_1 RGCY 9 cut(s) 18, 57, 69, 173, 294, 329, 338, 465, 489
CviQI GTAC 5 cut(s) 74, 91, 283, 459, 549
DdeI CTNAG 1 cut(s) 485
DpnI GATC 5 cut(s) 225, 302, 398, 426, 432
DpnII GATC 5 cut(s) 223, 300, 396, 424, 430
EaeI YGGCCR 1 cut(s) 171
EagI CGGCCG 1 cut(s) 171
Eam1104I CTCTTC 1 cut(s) 41
EarI CTCTTC 1 cut(s) 41
Ecl136II GAGCTC 1 cut(s) 57
EclXI CGGCCG 1 cut(s) 171
Eco147I AGGCCT 1 cut(s) 329
Eco24I GRGCYC 1 cut(s) 59
Eco47I GGWCC 1 cut(s) 442
Eco52I CGGCCG 1 cut(s) 171
Eco53kI GAGCTC 1 cut(s) 57
Eco88I CYCGRG 1 cut(s) 77
EcoICRI GAGCTC 1 cut(s) 57
EcoRII CCWGG 1 cut(s) 367
EcoT38I GRGCYC 1 cut(s) 59
FaeI CATG 1 cut(s) 274
FaiI YATR 3 cut(s) 272, 345, 500
FatI CATG 1 cut(s) 270
FauI CCCGC 2 cut(s) 28, 35
Fnu4HI GCNGC 5 cut(s) 33, 40, 111, 122, 339
FokI GGATG 2 cut(s) 20, 290
FriOI GRGCYC 1 cut(s) 59
Fsp4HI GCNGC 5 cut(s) 33, 40, 111, 122, 339
FspBI CTAG 1 cut(s) 71
GluI GCNGC 5 cut(s) 33, 40, 111, 122, 339
HaeIII GGCC 4 cut(s) 18, 173, 329, 465
HapII CCGG 5 cut(s) 147, 163, 174, 440, 462
Hin1I GRCGYC 1 cut(s) 231
Hin1II CATG 1 cut(s) 274
HinfI GANTC 4 cut(s) 62, 206, 315, 380
HpaII CCGG 5 cut(s) 147, 163, 174, 440, 462
HphI GGTGA 2 cut(s) 136, 581
Hpy166II GTNNAC 3 cut(s) 144, 283, 285
Hpy188I TCNGA 6 cut(s) 24, 61, 196, 300, 305, 394
Hpy188III TCNNGA 5 cut(s) 79, 218, 227, 377, 428
Hpy8I GTNNAC 3 cut(s) 144, 283, 285
Hpy99I CGWCG 6 cut(s) 28, 31, 200, 224, 233, 300
HpyAV CCTTC 1 cut(s) 29
HpyCH4III ACNGT 1 cut(s) 154
HpyCH4IV ACGT 1 cut(s) 231
HpyF10VI GCNNNNNNNGC 3 cut(s) 110, 335, 495
HpyF3I CTNAG 1 cut(s) 485
HpySE526I ACGT 1 cut(s) 231
Hsp92I GRCGYC 1 cut(s) 231
Hsp92II CATG 1 cut(s) 274
Kzo9I GATC 5 cut(s) 223, 300, 396, 424, 430
LmnI GCTCC 3 cut(s) 62, 165, 265
Lsp1109I GCAGC 2 cut(s) 108, 325
MaeI CTAG 1 cut(s) 71
MaeII ACGT 1 cut(s) 231
MaeIII GTNAC 3 cut(s) 154, 359, 377
MalI GATC 5 cut(s) 225, 302, 398, 426, 432
MboI GATC 5 cut(s) 223, 300, 396, 424, 430
MboII GAAGA 1 cut(s) 58
MhlI GDGCHC 3 cut(s) 59, 106, 270
MluCI AATT 3 cut(s) 200, 539, 572
MlyI GAGTC 1 cut(s) 374
MmeI TCCRAC 3 cut(s) 47, 219, 278
MseI TTAA 2 cut(s) 183, 586
MspI CCGG 5 cut(s) 147, 163, 174, 440, 462
MspR9I CCNGG 2 cut(s) 175, 369
MvaI CCWGG 1 cut(s) 369
MwoI GCNNNNNNNGC 3 cut(s) 110, 335, 495
NciI CCSGG 1 cut(s) 175
NdeII GATC 5 cut(s) 223, 300, 396, 424, 430
NlaIII CATG 1 cut(s) 274
NlaIV GGNNCC 3 cut(s) 151, 179, 466
NmuCI GTSAC 3 cut(s) 154, 359, 377
NspI RCATGY 1 cut(s) 274
PceI AGGCCT 1 cut(s) 329
PciI ACATGT 1 cut(s) 270
PcsI WCGNNNNNNNCGW 3 cut(s) 225, 228, 234
PfeI GAWTC 3 cut(s) 62, 206, 315
PflMI CCANNNNNTGG 1 cut(s) 318
PkrI GCNGC 5 cut(s) 34, 41, 112, 123, 340
PleI GAGTC 1 cut(s) 374
PpsI GAGTC 1 cut(s) 374
PscI ACATGT 1 cut(s) 270
Psp124BI GAGCTC 1 cut(s) 59
Psp6I CCWGG 1 cut(s) 367
PspGI CCWGG 1 cut(s) 367
PspN4I GGNNCC 3 cut(s) 151, 179, 466
PspPI GGNCC 2 cut(s) 442, 464
PstNI CAGNNNCTG 1 cut(s) 318
RsaI GTAC 5 cut(s) 75, 92, 284, 460, 550
RsaNI GTAC 5 cut(s) 74, 91, 283, 459, 549
SacI GAGCTC 1 cut(s) 59
SaqAI TTAA 2 cut(s) 183, 586
SatI GCNGC 5 cut(s) 33, 40, 111, 122, 339
Sau3AI GATC 5 cut(s) 223, 300, 396, 424, 430
Sau96I GGNCC 2 cut(s) 442, 464
ScaI AGTACT 1 cut(s) 75
SchI GAGTC 1 cut(s) 374
ScrFI CCNGG 2 cut(s) 175, 369
SduI GDGCHC 3 cut(s) 59, 106, 270
SetI ASST 7 cut(s) 59, 92, 183, 234, 366, 439, 491
SinI GGWCC 1 cut(s) 442
Sse9I AATT 3 cut(s) 200, 539, 572
SseBI AGGCCT 1 cut(s) 329
SsiI CCGC 6 cut(s) 32, 35, 39, 42, 110, 415
SspMI CTAG 1 cut(s) 71
SstI GAGCTC 1 cut(s) 59
StuI AGGCCT 1 cut(s) 329
StyD4I CCNGG 2 cut(s) 173, 367
TaaI ACNGT 1 cut(s) 154
TaiI ACGT 1 cut(s) 234
TaqI TCGA 6 cut(s) 65, 228, 237, 423, 429, 530
TasI AATT 3 cut(s) 200, 539, 572
TatI WGTACW 3 cut(s) 73, 282, 548
TauI GCSGC 3 cut(s) 35, 42, 113
TfiI GAWTC 3 cut(s) 62, 206, 315
Tru1I TTAA 2 cut(s) 183, 586
Tru9I TTAA 2 cut(s) 183, 586
TscAI CASTG 2 cut(s) 111, 364
TseFI GTSAC 3 cut(s) 154, 359, 377
TseI GCWGC 2 cut(s) 121, 338
Tsp45I GTSAC 3 cut(s) 154, 359, 377
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 111, 364
Van91I CCANNNNNTGG 1 cut(s) 318
VpaK11BI GGWCC 1 cut(s) 442
XapI RAATTY 1 cut(s) 200
XceI RCATGY 1 cut(s) 274
XspI CTAG 1 cut(s) 71
ZraI GACGTC 1 cut(s) 232
ZrmI AGTACT 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.