Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001534

Physical Location & Seq

Genomic Coordinates Forward (+)

8817134 .. 8819652

Gene Structure 2519 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0103200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGCTGAAAAATTTGAGCTTGGTGATGTGAAACAGCCCAAAGAAGAAGCTGAGGAAATTGAGGCCTCTACTCATGATCTGCCCAACATTAAGAGCAACAGGGACAGAAACAAGCCATCTGCACTTAATATCCCTGCTCGTGCTCCTGCTCAGCTTACCATCTTCTACGCAGGGAGTGTTACCGTCTTTGATGCAGTTACTGCAGAAAAGGTCCGTGAACTTCTTATCGCGGCTGCTGCAGCTGCTGCTGATAAGGTCATTGATGTAAATAATAGTGGCAACAGCTGTCCTCCAAGTCCACAGATACAAACTGGGTCGAGTTCTCTTCAAAATTCTTCTACTGCTCCTGGTTCACCAGTTGTCCAGCTCTACCCTGACCAGAAGAGCTCCATTTGCAAATTGCAAGCTGAATTCCCAATTGCAAGAAGACACTCTCTTCAGCGTTTCCTGGAGAAGCGTAGGGACAGATTGGGCAGCAAGAGTCCATACCCTACTTCTCCAGCAACACCGGTGGATGATAATGCAAAGACAAACCTCAGCAATAATGCTTCTTCCGGTTTGGGTTGTTTCAAACAATCTGCCGTGGGTCAGGAACAAATTCAACCAAGTTCTGCGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1195

Protein Analysis

206

Amino Acids

21.97

Weight (kDa)

7.69

Isoelectric Point (pI)

69.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tify	PF06200	48 - 78	1.1e-13	tify domain
Jas_motif	PF09425	139 - 164	2.1e-14	Jas motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001534)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33467 AT4G33467
fragaria_vesca	FvH4_1g13550
malus_domestica	MD02G1150700.v1.1 MD15G1265300.v1.1
prunus_persica	Prupe.7G152300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0101941 RchiOBHm_Chr7g0231621
rosa_laevigata	RLG00000003218 RLG00000003459 RLG00000005525 RLG00000005735 RLG00000008080 RLG00000009250 RLG00000012890 RLG00000014921 RLG00000016044 RLG00000017118 RLG00000017262 RLG00000018139 RLG00000018892 RLG00000019095 RLG00000020815 RLG00000023064 RLG00000024324 RLG00000024611 RLG00000024901 RLG00000025131 RLG00000026573 RLG00000028471 RLG00000029991 RLG00000030471 RLG00000033464 RLG00000033615
rosa_multiflora	Rmu_sc0000697.1_g000010 Rmu_sc0004767.1_g000002 Rmu_sc0012270.1_g000006
rosa_roxburghii	Rroxscaffold_2G00132820 Rroxscaffold_2G00140910 Rroxscaffold_3G00223440 Rroxscaffold_3G00265480 Rroxscaffold_5G00344290
rosa_rugosa	Rorug02G0103200 Rorug05G0210700 Rorug06G0152900
rosa_samantha	Rh2AG151300 Rh2BG156800 Rh2CG156600 Rh2DG156900 Rh6AG272100
rosa_wichuraiana	Rw2G011810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	230
AciI	CCGC	2 cut(s)	230, 614
AcsI	RAATTY	4 cut(s)	11, 331, 410, 597
AcuI	CTGAAG	1 cut(s)	422
AgeI	ACCGGT	1 cut(s)	508
AgsI	TTSAA	3 cut(s)	329, 571, 602
AjnI	CCWGG	2 cut(s)	346, 447
AluBI	AGCT	8 cut(s)	19, 50, 154, 242, 285, 367, 387, 407
AluI	AGCT	8 cut(s)	19, 50, 154, 242, 285, 367, 387, 407
Alw21I	GWGCWC	2 cut(s)	145, 389
AlwNI	CAGNNNCTG	2 cut(s)	200, 245
AoxI	GGCC	2 cut(s)	63, 615
ApeKI	GCWGC	6 cut(s)	233, 236, 239, 242, 245, 474
ApoI	RAATTY	4 cut(s)	11, 331, 410, 597
AsiGI	ACCGGT	1 cut(s)	508
Asp700I	GAANNNNTTC	1 cut(s)	597
AspS9I	GGNCC	1 cut(s)	211
AsuHPI	GGTGA	2 cut(s)	35, 345
AvaII	GGWCC	1 cut(s)	211
BanII	GRGCYC	1 cut(s)	389
BauI	CACGAG	1 cut(s)	138
BbsI	GAAGAC	1 cut(s)	433
Bbv12I	GWGCWC	2 cut(s)	145, 389
BbvCI	CCTCAGC	2 cut(s)	51, 536
BbvI	GCAGC	6 cut(s)	220, 223, 229, 232, 251, 486
BccI	CCATC	2 cut(s)	124, 167
BceAI	ACGGC	1 cut(s)	566
BciT130I	CCWGG	2 cut(s)	348, 449
BfaI	CTAG	1 cut(s)	619
BfmI	CTRYAG	2 cut(s)	201, 237
BisI	GCNGC	8 cut(s)	231, 234, 237, 240, 243, 246, 475, 615
BlpI	GCTNAGC	1 cut(s)	150
BlsI	GCNGC	8 cut(s)	232, 235, 238, 241, 244, 247, 476, 616
Bme1390I	CCNGG	2 cut(s)	348, 449
Bme18I	GGWCC	1 cut(s)	211
BmgT120I	GGNCC	1 cut(s)	211
BmrFI	CCNGG	2 cut(s)	348, 449
BmrI	ACTGGG	1 cut(s)	321
BmsI	GCATC	1 cut(s)	181
BmuI	ACTGGG	1 cut(s)	321
BpiI	GAAGAC	1 cut(s)	433
BpmI	CTGGAG	2 cut(s)	470, 483
Bpu10I	CCTNAGC	2 cut(s)	51, 536
Bpu1102I	GCTNAGC	1 cut(s)	150
BsaJI	CCNNGG	1 cut(s)	582
BsaWI	WCCGGW	2 cut(s)	508, 554
Bse118I	RCCGGY	1 cut(s)	508
Bse1I	ACTGG	2 cut(s)	316, 356
BseBI	CCWGG	2 cut(s)	348, 449
BseDI	CCNNGG	1 cut(s)	582
BseGI	GGATG	1 cut(s)	520
BseMII	CTCAG	3 cut(s)	42, 164, 550
BseNI	ACTGG	2 cut(s)	316, 356
BseXI	GCAGC	6 cut(s)	220, 223, 229, 232, 251, 486
BsgI	GTGCAG	1 cut(s)	105
Bsh1236I	CGCG	1 cut(s)	230
BshFI	GGCC	2 cut(s)	65, 617
BshTI	ACCGGT	1 cut(s)	508
BsiHKAI	GWGCWC	2 cut(s)	145, 389
BsiSI	CCGG	2 cut(s)	509, 555
BslFI	GGGAC	2 cut(s)	116, 476
BsmFI	GGGAC	2 cut(s)	116, 476
BsnI	GGCC	2 cut(s)	65, 617
Bsp1286I	GDGCHC	2 cut(s)	145, 389
Bsp143I	GATC	1 cut(s)	76
Bsp1720I	GCTNAGC	1 cut(s)	150
BspACI	CCGC	2 cut(s)	230, 614
BspANI	GGCC	2 cut(s)	65, 617
BspCNI	CTCAG	3 cut(s)	43, 163, 549
BspFNI	CGCG	1 cut(s)	230
BspHI	TCATGA	1 cut(s)	73
BspMAI	CTGCAG	2 cut(s)	205, 241
BspQI	GCTCTTC	1 cut(s)	377
BsrFI	RCCGGY	1 cut(s)	508
BsrI	ACTGG	2 cut(s)	316, 356
BssAI	RCCGGY	1 cut(s)	508
BssECI	CCNNGG	1 cut(s)	582
BssMI	GATC	1 cut(s)	76
BssSI	CACGAG	1 cut(s)	138
Bst2BI	CACGAG	1 cut(s)	138
Bst2UI	CCWGG	2 cut(s)	348, 449
Bst4CI	ACNGT	1 cut(s)	184
Bst6I	CTCTTC	3 cut(s)	330, 377, 441
BstAPI	GCANNNNNTGC	2 cut(s)	200, 245
BstC8I	GCNNGC	1 cut(s)	405
BstDEI	CTNAG	3 cut(s)	51, 150, 536
BstDSI	CCRYGG	1 cut(s)	582
BstF5I	GGATG	1 cut(s)	520
BstFNI	CGCG	1 cut(s)	230
BstKTI	GATC	1 cut(s)	79
BstMBI	GATC	1 cut(s)	76
BstMWI	GCNNNNNNNGC	6 cut(s)	200, 236, 239, 242, 245, 393
BstNI	CCWGG	2 cut(s)	348, 449
BstSCI	CCNGG	2 cut(s)	346, 447
BstSFI	CTRYAG	2 cut(s)	201, 237
BstUI	CGCG	1 cut(s)	230
BstV1I	GCAGC	6 cut(s)	220, 223, 229, 232, 251, 486
BstV2I	GAAGAC	1 cut(s)	433
BsuRI	GGCC	2 cut(s)	65, 617
BtgI	CCRYGG	1 cut(s)	582
BtsCI	GGATG	1 cut(s)	520
Cac8I	GCNNGC	1 cut(s)	405
CaiI	CAGNNNCTG	2 cut(s)	200, 245
CciI	TCATGA	1 cut(s)	73
Cfr10I	RCCGGY	1 cut(s)	508
Cfr13I	GGNCC	1 cut(s)	211
CspAI	ACCGGT	1 cut(s)	508
CspCI	CAANNNNNGTGG	2 cut(s)	492, 527
CviAII	CATG	1 cut(s)	74
DdeI	CTNAG	3 cut(s)	51, 150, 536
DpnI	GATC	1 cut(s)	78
DpnII	GATC	1 cut(s)	76
Eam1104I	CTCTTC	3 cut(s)	330, 377, 441
EarI	CTCTTC	3 cut(s)	330, 377, 441
Ecl136II	GAGCTC	1 cut(s)	387
Eco147I	AGGCCT	1 cut(s)	65
Eco24I	GRGCYC	1 cut(s)	389
Eco47I	GGWCC	1 cut(s)	211
Eco53kI	GAGCTC	1 cut(s)	387
Eco57I	CTGAAG	1 cut(s)	422
EcoICRI	GAGCTC	1 cut(s)	387
EcoRI	GAATTC	1 cut(s)	410
EcoRII	CCWGG	2 cut(s)	346, 447
EcoT38I	GRGCYC	1 cut(s)	389
FaeI	CATG	1 cut(s)	77
FaiI	YATR	2 cut(s)	75, 487
FaqI	GGGAC	2 cut(s)	116, 476
FatI	CATG	1 cut(s)	73
Fnu4HI	GCNGC	8 cut(s)	231, 234, 237, 240, 243, 246, 475, 615
FokI	GGATG	1 cut(s)	527
FriOI	GRGCYC	1 cut(s)	389
Fsp4HI	GCNGC	8 cut(s)	231, 234, 237, 240, 243, 246, 475, 615
FspBI	CTAG	1 cut(s)	619
GluI	GCNGC	8 cut(s)	231, 234, 237, 240, 243, 246, 475, 615
GsuI	CTGGAG	2 cut(s)	470, 483
HaeIII	GGCC	2 cut(s)	65, 617
HapII	CCGG	2 cut(s)	509, 555
Hin1II	CATG	1 cut(s)	77
HinfI	GANTC	1 cut(s)	481
HpaII	CCGG	2 cut(s)	509, 555
HphI	GGTGA	2 cut(s)	35, 345
Hpy166II	GTNNAC	3 cut(s)	218, 299, 353
Hpy188III	TCNNGA	2 cut(s)	74, 590
Hpy8I	GTNNAC	3 cut(s)	218, 299, 353
HpyCH4III	ACNGT	1 cut(s)	184
HpyCH4V	TGCA	8 cut(s)	122, 194, 203, 239, 396, 403, 422, 524
HpyF10VI	GCNNNNNNNGC	6 cut(s)	200, 236, 239, 242, 245, 393
HpyF3I	CTNAG	3 cut(s)	51, 150, 536
Hsp92II	CATG	1 cut(s)	77
Kzo9I	GATC	1 cut(s)	76
LguI	GCTCTTC	1 cut(s)	377
LmnI	GCTCC	3 cut(s)	148, 349, 392
Lsp1109I	GCAGC	6 cut(s)	220, 223, 229, 232, 251, 486
LweI	GCATC	1 cut(s)	181
MaeI	CTAG	1 cut(s)	619
MaeIII	GTNAC	2 cut(s)	178, 196
MalI	GATC	1 cut(s)	78
MboI	GATC	1 cut(s)	76
MboII	GAAGA	8 cut(s)	56, 154, 317, 327, 394, 428, 438, 543
MfeI	CAATTG	1 cut(s)	417
MhlI	GDGCHC	2 cut(s)	145, 389
MluCI	AATT	7 cut(s)	11, 57, 331, 398, 410, 417, 597
MlyI	GAGTC	1 cut(s)	490
MnlI	CCTC	5 cut(s)	46, 55, 76, 300, 545
MroXI	GAANNNNTTC	1 cut(s)	597
MseI	TTAA	2 cut(s)	90, 126
MspA1I	CMGCKG	2 cut(s)	242, 285
MspI	CCGG	2 cut(s)	509, 555
MspR9I	CCNGG	2 cut(s)	348, 449
MunI	CAATTG	1 cut(s)	417
MvaI	CCWGG	2 cut(s)	348, 449
MvnI	CGCG	1 cut(s)	230
MwoI	GCNNNNNNNGC	6 cut(s)	200, 236, 239, 242, 245, 393
NdeII	GATC	1 cut(s)	76
NlaIII	CATG	1 cut(s)	77
PagI	TCATGA	1 cut(s)	73
PceI	AGGCCT	1 cut(s)	65
PciSI	GCTCTTC	1 cut(s)	377
PdmI	GAANNNNTTC	1 cut(s)	597
PfoI	TCCNGGA	1 cut(s)	447
PinAI	ACCGGT	1 cut(s)	508
PkrI	GCNGC	8 cut(s)	232, 235, 238, 241, 244, 247, 476, 616
PleI	GAGTC	1 cut(s)	489
PpsI	GAGTC	1 cut(s)	489
Psp124BI	GAGCTC	1 cut(s)	389
Psp6I	CCWGG	2 cut(s)	346, 447
PspGI	CCWGG	2 cut(s)	346, 447
PspPI	GGNCC	1 cut(s)	211
PstI	CTGCAG	2 cut(s)	205, 241
PstNI	CAGNNNCTG	2 cut(s)	200, 245
PvuII	CAGCTG	2 cut(s)	242, 285
SacI	GAGCTC	1 cut(s)	389
SapI	GCTCTTC	1 cut(s)	377
SaqAI	TTAA	2 cut(s)	90, 126
SatI	GCNGC	8 cut(s)	231, 234, 237, 240, 243, 246, 475, 615
Sau3AI	GATC	1 cut(s)	76
Sau96I	GGNCC	1 cut(s)	211
SchI	GAGTC	1 cut(s)	490
ScrFI	CCNGG	2 cut(s)	348, 449
SduI	GDGCHC	2 cut(s)	145, 389
SfaNI	GCATC	1 cut(s)	181
SfcI	CTRYAG	2 cut(s)	201, 237
SgrAI	CRCCGGYG	1 cut(s)	508
SinI	GGWCC	1 cut(s)	211
Sse9I	AATT	7 cut(s)	11, 57, 331, 398, 410, 417, 597
SseBI	AGGCCT	1 cut(s)	65
SsiI	CCGC	2 cut(s)	230, 614
SspMI	CTAG	1 cut(s)	619
SstI	GAGCTC	1 cut(s)	389
StuI	AGGCCT	1 cut(s)	65
StyD4I	CCNGG	2 cut(s)	346, 447
TaaI	ACNGT	1 cut(s)	184
TaqI	TCGA	1 cut(s)	317
TasI	AATT	7 cut(s)	11, 57, 331, 398, 410, 417, 597
TauI	GCSGC	2 cut(s)	233, 617
Tru1I	TTAA	2 cut(s)	90, 126
Tru9I	TTAA	2 cut(s)	90, 126
TseI	GCWGC	6 cut(s)	233, 236, 239, 242, 245, 474
TspGWI	ACGGA	1 cut(s)	203
VpaK11BI	GGWCC	1 cut(s)	211
XapI	RAATTY	4 cut(s)	11, 331, 410, 597
XmnI	GAANNNNTTC	1 cut(s)	597
XspI	CTAG	1 cut(s)	619

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.