RLG00000009250

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0001534
Physical Location & Seq
Reverse (-)
49749820 .. 49750283
464 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009250

Sequence Viewer

Length: 432 bp
ATGGCGGTCGAGGATGGCGATGTCAATCTGCCTTGGGGTTGCGGCGACGATGATCTCTTGCTAAAGGGAAGGTCTGGTGTTCTTGGACTGGGGTTGGCTGCGGCTTGGTGTGGCGACGGTTGCGGCAGGCAACAGGGTCAGATCTTCTCGACCGGCGTCGGAGCCAGAGTAAAGCTGGTTGCTGTTGGGAGCGGCGACGATGGCGGTGGGCGGTGGGGGAAGTCTTCCTTGGCCGGCGCCATCGAATGGAGGTGGACTGGTACTCTGCCTTGCTGGGTTTGGGTGTCCATGGGTTTAGGTGGCCTTAGCAAGTCTAGTTGGGCTTTGATCCCTTCTAGGCCTAGTGCTAGGGTTTCCCTTTCCTTTGGGCCTCTGTCTGGCATATGGAGTAGCTGGGCTGCTAGGCTAAATTCATTCTCCTATGGAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

144

Amino Acids

14.85

Weight (kDa)

7.64

Isoelectric Point (pI)

29.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 236
AccB7I CCANNNNNTGG 1 cut(s) 246
AccBSI CCGCTC 1 cut(s) 192
AciI CCGC 7 cut(s) 5, 42, 101, 123, 192, 204, 211
AclWI GGATC 1 cut(s) 322
AcoI YGGCCR 1 cut(s) 231
AcsI RAATTY 1 cut(s) 409
AcyI GRCGYC 2 cut(s) 156, 237
AfaI GTAC 1 cut(s) 262
AfiI CCNNNNNNNGG 2 cut(s) 246, 377
AjuI GAANNNNNNNTTGG 2 cut(s) 212, 244
AluBI AGCT 2 cut(s) 175, 393
AluI AGCT 2 cut(s) 175, 393
AlwI GGATC 1 cut(s) 322
AoxI GGCC 4 cut(s) 231, 301, 338, 368
ApeKI GCWGC 2 cut(s) 98, 398
ApoI RAATTY 1 cut(s) 409
AspLEI GCGC 1 cut(s) 239
AspS9I GGNCC 1 cut(s) 368
BanI GGYRCC 1 cut(s) 236
BbsI GAAGAC 1 cut(s) 216
BbvI GCAGC 2 cut(s) 85, 385
BccI CCATC 3 cut(s) 8, 194, 248
BfaI CTAG 5 cut(s) 315, 336, 342, 348, 402
BfoI RGCGCY 1 cut(s) 240
BglII AGATCT 1 cut(s) 141
BisI GCNGC 6 cut(s) 43, 99, 102, 124, 193, 399
BlsI GCNGC 6 cut(s) 44, 100, 103, 125, 194, 400
BmgT120I GGNCC 1 cut(s) 368
BmiI GGNNCC 2 cut(s) 163, 238
BmrI ACTGGG 1 cut(s) 98
BmuI ACTGGG 1 cut(s) 98
BoxI GACNNNNGTC 1 cut(s) 155
BpiI GAAGAC 1 cut(s) 216
Bpu10I CCTNAGC 1 cut(s) 305
BsaBI GATNNNNATC 1 cut(s) 24
BsaHI GRCGYC 2 cut(s) 156, 237
BsaJI CCNNGG 3 cut(s) 32, 228, 288
BsaXI ACNNNNNCTCC 2 cut(s) 153, 183
Bsc4I CCNNNNNNNGG 2 cut(s) 246, 377
Bse118I RCCGGY 2 cut(s) 152, 233
Bse1I ACTGG 2 cut(s) 93, 262
Bse8I GATNNNNATC 1 cut(s) 24
BseDI CCNNGG 3 cut(s) 32, 228, 288
BseGI GGATG 1 cut(s) 19
BseJI GATNNNNATC 1 cut(s) 24
BseLI CCNNNNNNNGG 2 cut(s) 246, 377
BseNI ACTGG 2 cut(s) 93, 262
BseXI GCAGC 2 cut(s) 85, 385
BseYI CCCAGC 2 cut(s) 273, 393
Bsh1285I CGRYCG 2 cut(s) 9, 153
BshFI GGCC 4 cut(s) 233, 303, 340, 370
BshNI GGYRCC 1 cut(s) 236
BsiEI CGRYCG 2 cut(s) 9, 153
BsiSI CCGG 2 cut(s) 153, 234
BslI CCNNNNNNNGG 2 cut(s) 246, 377
BsnI GGCC 4 cut(s) 233, 303, 340, 370
Bsp143I GATC 3 cut(s) 52, 141, 327
Bsp19I CCATGG 1 cut(s) 288
BspACI CCGC 7 cut(s) 5, 42, 101, 123, 192, 204, 211
BspANI GGCC 4 cut(s) 233, 303, 340, 370
BspLI GGNNCC 2 cut(s) 163, 238
BspPI GGATC 1 cut(s) 322
BspT107I GGYRCC 1 cut(s) 236
BsrBI CCGCTC 1 cut(s) 192
BsrFI RCCGGY 2 cut(s) 152, 233
BsrI ACTGG 2 cut(s) 93, 262
BssAI RCCGGY 2 cut(s) 152, 233
BssECI CCNNGG 3 cut(s) 32, 228, 288
BssMI GATC 3 cut(s) 52, 141, 327
BssNI GRCGYC 2 cut(s) 156, 237
BssT1I CCWWGG 3 cut(s) 32, 228, 288
Bst4CI ACNGT 1 cut(s) 119
BstACI GRCGYC 2 cut(s) 156, 237
BstC8I GCNNGC 2 cut(s) 128, 235
BstDEI CTNAG 1 cut(s) 305
BstDSI CCRYGG 1 cut(s) 288
BstF5I GGATG 1 cut(s) 19
BstH2I RGCGCY 1 cut(s) 240
BstHHI GCGC 1 cut(s) 239
BstKTI GATC 3 cut(s) 55, 144, 330
BstMBI GATC 3 cut(s) 52, 141, 327
BstMCI CGRYCG 2 cut(s) 9, 153
BstMWI GCNNNNNNNGC 2 cut(s) 120, 201
BstPAI GACNNNNGTC 1 cut(s) 155
BstV1I GCAGC 2 cut(s) 85, 385
BstV2I GAAGAC 1 cut(s) 216
BstX2I RGATCY 1 cut(s) 141
BstYI RGATCY 1 cut(s) 141
BsuRI GGCC 4 cut(s) 233, 303, 340, 370
BtgI CCRYGG 1 cut(s) 288
BtgZI GCGATG 1 cut(s) 33
BtsCI GGATG 1 cut(s) 19
Cac8I GCNNGC 2 cut(s) 128, 235
CfoI GCGC 1 cut(s) 239
Cfr10I RCCGGY 2 cut(s) 152, 233
Cfr13I GGNCC 1 cut(s) 368
CseI GACGC 1 cut(s) 145
Csp6I GTAC 1 cut(s) 261
CviAII CATG 1 cut(s) 289
CviQI GTAC 1 cut(s) 261
DdeI CTNAG 1 cut(s) 305
DinI GGCGCC 1 cut(s) 238
DpnI GATC 3 cut(s) 54, 143, 329
DpnII GATC 3 cut(s) 52, 141, 327
EaeI YGGCCR 1 cut(s) 231
Eco130I CCWWGG 3 cut(s) 32, 228, 288
Eco147I AGGCCT 1 cut(s) 340
EcoT14I CCWWGG 3 cut(s) 32, 228, 288
EgeI GGCGCC 1 cut(s) 238
EheI GGCGCC 1 cut(s) 238
ErhI CCWWGG 3 cut(s) 32, 228, 288
FaeI CATG 1 cut(s) 292
FaiI YATR 4 cut(s) 290, 383, 385, 423
FalI AAGNNNNNCTT 2 cut(s) 212, 244
FatI CATG 1 cut(s) 288
FauNDI CATATG 1 cut(s) 383
Fnu4HI GCNGC 6 cut(s) 43, 99, 102, 124, 193, 399
FokI GGATG 1 cut(s) 26
Fsp4HI GCNGC 6 cut(s) 43, 99, 102, 124, 193, 399
FspBI CTAG 5 cut(s) 315, 336, 342, 348, 402
GlaI GCGC 1 cut(s) 238
GluI GCNGC 6 cut(s) 43, 99, 102, 124, 193, 399
GsaI CCCAGC 2 cut(s) 277, 397
HaeII RGCGCY 1 cut(s) 240
HaeIII GGCC 4 cut(s) 233, 303, 340, 370
HapII CCGG 2 cut(s) 153, 234
HgaI GACGC 1 cut(s) 145
HhaI GCGC 1 cut(s) 239
Hin1I GRCGYC 2 cut(s) 156, 237
Hin1II CATG 1 cut(s) 292
Hin6I GCGC 1 cut(s) 237
HinP1I GCGC 1 cut(s) 237
HpaII CCGG 2 cut(s) 153, 234
Hpy166II GTNNAC 1 cut(s) 255
Hpy188I TCNGA 2 cut(s) 141, 161
Hpy188III TCNNGA 1 cut(s) 148
Hpy8I GTNNAC 1 cut(s) 255
Hpy99I CGWCG 4 cut(s) 50, 119, 161, 200
HpyAV CCTTC 2 cut(s) 63, 342
HpyCH4III ACNGT 1 cut(s) 119
HpyF10VI GCNNNNNNNGC 2 cut(s) 120, 201
HpyF3I CTNAG 1 cut(s) 305
Hsp92I GRCGYC 2 cut(s) 156, 237
Hsp92II CATG 1 cut(s) 292
HspAI GCGC 1 cut(s) 237
KasI GGCGCC 1 cut(s) 236
KroI GCCGGC 1 cut(s) 233
KroNI GCCGGC 1 cut(s) 235
Kzo9I GATC 3 cut(s) 52, 141, 327
LmnI GCTCC 2 cut(s) 161, 189
Lsp1109I GCAGC 2 cut(s) 85, 385
MaeI CTAG 5 cut(s) 315, 336, 342, 348, 402
MalI GATC 3 cut(s) 54, 143, 329
MbiI CCGCTC 1 cut(s) 192
MboI GATC 3 cut(s) 52, 141, 327
MboII GAAGA 2 cut(s) 136, 216
MflI RGATCY 1 cut(s) 141
MluCI AATT 1 cut(s) 409
Mly113I GGCGCC 1 cut(s) 237
MmeI TCCRAC 1 cut(s) 139
MnlI CCTC 3 cut(s) 4, 243, 381
MroNI GCCGGC 1 cut(s) 233
MspI CCGG 2 cut(s) 153, 234
MwoI GCNNNNNNNGC 2 cut(s) 120, 201
NaeI GCCGGC 1 cut(s) 235
NarI GGCGCC 1 cut(s) 237
NcoI CCATGG 1 cut(s) 288
NdeI CATATG 1 cut(s) 383
NdeII GATC 3 cut(s) 52, 141, 327
NgoMIV GCCGGC 1 cut(s) 233
NlaIII CATG 1 cut(s) 292
NlaIV GGNNCC 2 cut(s) 163, 238
PceI AGGCCT 1 cut(s) 340
PcsI WCGNNNNNNNCGW 1 cut(s) 15
PdiI GCCGGC 1 cut(s) 235
PflMI CCANNNNNTGG 1 cut(s) 246
PkrI GCNGC 6 cut(s) 44, 100, 103, 125, 194, 400
PluTI GGCGCC 1 cut(s) 240
PshAI GACNNNNGTC 1 cut(s) 155
PspFI CCCAGC 2 cut(s) 273, 393
PspN4I GGNNCC 2 cut(s) 163, 238
PspPI GGNCC 1 cut(s) 368
PsuI RGATCY 1 cut(s) 141
RsaI GTAC 1 cut(s) 262
RsaNI GTAC 1 cut(s) 261
SatI GCNGC 6 cut(s) 43, 99, 102, 124, 193, 399
Sau3AI GATC 3 cut(s) 52, 141, 327
Sau96I GGNCC 1 cut(s) 368
SetI ASST 5 cut(s) 74, 177, 254, 301, 395
SfoI GGCGCC 1 cut(s) 238
Sse9I AATT 1 cut(s) 409
SseBI AGGCCT 1 cut(s) 340
SsiI CCGC 7 cut(s) 5, 42, 101, 123, 192, 204, 211
SspDI GGCGCC 1 cut(s) 236
SspMI CTAG 5 cut(s) 315, 336, 342, 348, 402
StuI AGGCCT 1 cut(s) 340
StyI CCWWGG 3 cut(s) 32, 228, 288
TaaI ACNGT 1 cut(s) 119
TaqI TCGA 3 cut(s) 9, 149, 243
TasI AATT 1 cut(s) 409
TauI GCSGC 4 cut(s) 45, 104, 126, 195
TseI GCWGC 2 cut(s) 98, 398
TspDTI ATGAA 1 cut(s) 402
Van91I CCANNNNNTGG 1 cut(s) 246
XapI RAATTY 1 cut(s) 409
XcmI CCANNNNNNNNNTGG 1 cut(s) 172
XspI CTAG 5 cut(s) 315, 336, 342, 348, 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.