Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001534

Physical Location & Seq

Genomic Coordinates Reverse (-)

23535045 .. 23535529

Gene Structure 485 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012890

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGCGACGGCTCTGCAAATTAGGCTGGAGGAGATGGAATTTACCTCTCGTCTGGTCTCTGGGAGATTGAGGGCTGCGGGGGGTGGTGGTGAGCCTGTGTTGCAAGGAGTTTCTCGCAACGAATATGAGGGATCTAGGTCATTTGGGATTGAGGATGGCTGGATAGGAATGGATCTGGTGATTGGTGCTGGTCGTGAGGTCGCGCAGTGGATCGGGTGGCGATCTTCCTCGTGTGTTAGTGCTGTGCTAAGTGGCTGGGTGTTGTCGGGGAATGGTGACATGGATGATGGTTGCGGCGCTGGGCTAGCAATGGCTCCACCGATCTGTGCCGGAGTAAAGCTAGCTGCTGTTGGGAGCGGCGACGATGGCGGTGGGCTATGGTGGAAGTCTTCCTCGGCTGATGCCGTTGAATGGAGGTGGACTGGTTTGTGTGTCCATGGGTTTGGGTGGCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

152

Amino Acids

15.75

Weight (kDa)

4.66

Isoelectric Point (pI)

48.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001534)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33467 AT4G33467
fragaria_vesca	FvH4_1g13550
malus_domestica	MD02G1150700.v1.1 MD15G1265300.v1.1
prunus_persica	Prupe.7G152300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0101941 RchiOBHm_Chr7g0231621
rosa_laevigata	RLG00000003218 RLG00000003459 RLG00000005525 RLG00000005735 RLG00000008080 RLG00000009250 RLG00000012890 RLG00000014921 RLG00000016044 RLG00000017118 RLG00000017262 RLG00000018139 RLG00000018892 RLG00000019095 RLG00000020815 RLG00000023064 RLG00000024324 RLG00000024611 RLG00000024901 RLG00000025131 RLG00000026573 RLG00000028471 RLG00000029991 RLG00000030471 RLG00000033464 RLG00000033615
rosa_multiflora	Rmu_sc0000697.1_g000010 Rmu_sc0004767.1_g000002 Rmu_sc0012270.1_g000006
rosa_roxburghii	Rroxscaffold_2G00132820 Rroxscaffold_2G00140910 Rroxscaffold_3G00223440 Rroxscaffold_3G00265480 Rroxscaffold_5G00344290
rosa_rugosa	Rorug02G0103200 Rorug05G0210700 Rorug06G0152900
rosa_samantha	Rh2AG151300 Rh2BG156800 Rh2CG156600 Rh2DG156900 Rh6AG272100
rosa_wichuraiana	Rw2G011810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	357
AccII	CGCG	1 cut(s)	203
AciI	CCGC	4 cut(s)	77, 294, 357, 369
AclWI	GGATC	3 cut(s)	139, 180, 218
AcsI	RAATTY	1 cut(s)	38
AfiI	CCNNNNNNNGG	1 cut(s)	411
AgsI	TTSAA	1 cut(s)	410
AluBI	AGCT	2 cut(s)	340, 344
AluI	AGCT	2 cut(s)	340, 344
Alw26I	GTCTC	1 cut(s)	61
AlwI	GGATC	3 cut(s)	139, 180, 218
AoxI	GGCC	1 cut(s)	449
ApeKI	GCWGC	2 cut(s)	74, 344
ApoI	RAATTY	1 cut(s)	38
AspLEI	GCGC	2 cut(s)	205, 299
AsuHPI	GGTGA	3 cut(s)	101, 190, 287
AsuNHI	GCTAGC	2 cut(s)	304, 340
BauI	CACGAG	1 cut(s)	229
BbsI	GAAGAC	1 cut(s)	381
BbvI	GCAGC	2 cut(s)	61, 331
BccI	CCATC	4 cut(s)	28, 149, 281, 359
BceAI	ACGGC	2 cut(s)	24, 389
BcgI	CGANNNNNNTGC	1 cut(s)	29
BcoDI	GTCTC	1 cut(s)	61
BfaI	CTAG	3 cut(s)	135, 305, 341
BfoI	RGCGCY	1 cut(s)	300
BisI	GCNGC	4 cut(s)	75, 295, 345, 358
BlsI	GCNGC	4 cut(s)	76, 296, 346, 359
BmiI	GGNNCC	1 cut(s)	315
BmsI	GCATC	1 cut(s)	391
BmtI	GCTAGC	2 cut(s)	308, 344
BpiI	GAAGAC	1 cut(s)	381
BpmI	CTGGAG	1 cut(s)	47
BsaI	GGTCTC	1 cut(s)	61
BsaJI	CCNNGG	2 cut(s)	393, 436
Bsc4I	CCNNNNNNNGG	1 cut(s)	411
Bse1I	ACTGG	1 cut(s)	427
Bse3DI	GCAATG	1 cut(s)	315
BseDI	CCNNGG	2 cut(s)	393, 436
BseGI	GGATG	2 cut(s)	160, 289
BseLI	CCNNNNNNNGG	1 cut(s)	411
BseMI	GCAATG	1 cut(s)	315
BseNI	ACTGG	1 cut(s)	427
BseRI	GAGGAG	1 cut(s)	44
BseXI	GCAGC	2 cut(s)	61, 331
BseYI	CCCAGC	2 cut(s)	255, 299
Bsh1236I	CGCG	1 cut(s)	203
BshFI	GGCC	1 cut(s)	451
BsiSI	CCGG	1 cut(s)	330
BslI	CCNNNNNNNGG	1 cut(s)	411
BsmAI	GTCTC	1 cut(s)	61
BsnI	GGCC	1 cut(s)	451
Bso31I	GGTCTC	1 cut(s)	61
Bsp143I	GATC	5 cut(s)	131, 172, 210, 221, 321
Bsp19I	CCATGG	1 cut(s)	436
BspACI	CCGC	4 cut(s)	77, 294, 357, 369
BspANI	GGCC	1 cut(s)	451
BspFNI	CGCG	1 cut(s)	203
BspLI	GGNNCC	1 cut(s)	315
BspOI	GCTAGC	2 cut(s)	308, 344
BspPI	GGATC	3 cut(s)	139, 180, 218
BspTNI	GGTCTC	1 cut(s)	61
BsrBI	CCGCTC	1 cut(s)	357
BsrDI	GCAATG	1 cut(s)	315
BsrI	ACTGG	1 cut(s)	427
BssECI	CCNNGG	2 cut(s)	393, 436
BssMI	GATC	5 cut(s)	131, 172, 210, 221, 321
BssSI	CACGAG	1 cut(s)	229
BssT1I	CCWWGG	1 cut(s)	436
Bst2BI	CACGAG	1 cut(s)	229
BstC8I	GCNNGC	2 cut(s)	306, 342
BstDEI	CTNAG	2 cut(s)	248, 453
BstDSI	CCRYGG	1 cut(s)	436
BstF5I	GGATG	2 cut(s)	160, 289
BstFNI	CGCG	1 cut(s)	203
BstH2I	RGCGCY	1 cut(s)	300
BstHHI	GCGC	2 cut(s)	205, 299
BstKTI	GATC	5 cut(s)	134, 175, 213, 224, 324
BstMAI	GTCTC	1 cut(s)	61
BstMBI	GATC	5 cut(s)	131, 172, 210, 221, 321
BstMWI	GCNNNNNNNGC	4 cut(s)	22, 100, 305, 366
BstUI	CGCG	1 cut(s)	203
BstV1I	GCAGC	2 cut(s)	61, 331
BstV2I	GAAGAC	1 cut(s)	381
BstX2I	RGATCY	2 cut(s)	131, 172
BstXI	CCANNNNNNTGG	1 cut(s)	443
BstYI	RGATCY	2 cut(s)	131, 172
BsuRI	GGCC	1 cut(s)	451
BtgI	CCRYGG	1 cut(s)	436
BtsCI	GGATG	2 cut(s)	160, 289
BtsI	GCAGTG	1 cut(s)	212
BtsIMutI	CAGTG	1 cut(s)	212
Cac8I	GCNNGC	2 cut(s)	306, 342
CfoI	GCGC	2 cut(s)	205, 299
CviAII	CATG	2 cut(s)	280, 437
DdeI	CTNAG	2 cut(s)	248, 453
DpnI	GATC	5 cut(s)	133, 174, 212, 223, 323
DpnII	GATC	5 cut(s)	131, 172, 210, 221, 321
Eco130I	CCWWGG	1 cut(s)	436
Eco31I	GGTCTC	1 cut(s)	61
EcoT14I	CCWWGG	1 cut(s)	436
ErhI	CCWWGG	1 cut(s)	436
FaeI	CATG	2 cut(s)	283, 440
FaiI	YATR	4 cut(s)	126, 281, 379, 438
FatI	CATG	2 cut(s)	279, 436
FauI	CCCGC	1 cut(s)	70
Fnu4HI	GCNGC	4 cut(s)	75, 295, 345, 358
FokI	GGATG	2 cut(s)	167, 296
Fsp4HI	GCNGC	4 cut(s)	75, 295, 345, 358
FspBI	CTAG	3 cut(s)	135, 305, 341
GlaI	GCGC	2 cut(s)	204, 298
GluI	GCNGC	4 cut(s)	75, 295, 345, 358
GsaI	CCCAGC	2 cut(s)	259, 303
GsuI	CTGGAG	1 cut(s)	47
HaeII	RGCGCY	1 cut(s)	300
HaeIII	GGCC	1 cut(s)	451
HapII	CCGG	1 cut(s)	330
HhaI	GCGC	2 cut(s)	205, 299
Hin1II	CATG	2 cut(s)	283, 440
Hin6I	GCGC	2 cut(s)	203, 297
HinP1I	GCGC	2 cut(s)	203, 297
HpaII	CCGG	1 cut(s)	330
HphI	GGTGA	3 cut(s)	101, 190, 287
Hpy166II	GTNNAC	1 cut(s)	420
Hpy188III	TCNNGA	1 cut(s)	194
Hpy8I	GTNNAC	1 cut(s)	420
Hpy99I	CGWCG	2 cut(s)	10, 365
HpyCH4V	TGCA	2 cut(s)	16, 103
HpyF10VI	GCNNNNNNNGC	4 cut(s)	22, 100, 305, 366
HpyF3I	CTNAG	2 cut(s)	248, 453
Hsp92II	CATG	2 cut(s)	283, 440
HspAI	GCGC	2 cut(s)	203, 297
Kzo9I	GATC	5 cut(s)	131, 172, 210, 221, 321
LmnI	GCTCC	2 cut(s)	319, 354
Lsp1109I	GCAGC	2 cut(s)	61, 331
LweI	GCATC	1 cut(s)	391
MaeI	CTAG	3 cut(s)	135, 305, 341
MaeIII	GTNAC	1 cut(s)	275
MalI	GATC	5 cut(s)	133, 174, 212, 223, 323
MbiI	CCGCTC	1 cut(s)	357
MboI	GATC	5 cut(s)	131, 172, 210, 221, 321
MboII	GAAGA	2 cut(s)	216, 381
MflI	RGATCY	2 cut(s)	131, 172
MluCI	AATT	2 cut(s)	18, 38
MnlI	CCTC	9 cut(s)	22, 55, 63, 121, 145, 190, 238, 403, 408
MspI	CCGG	1 cut(s)	330
MvnI	CGCG	1 cut(s)	203
MwoI	GCNNNNNNNGC	4 cut(s)	22, 100, 305, 366
NcoI	CCATGG	1 cut(s)	436
NdeII	GATC	5 cut(s)	131, 172, 210, 221, 321
NheI	GCTAGC	2 cut(s)	304, 340
NlaIII	CATG	2 cut(s)	283, 440
NlaIV	GGNNCC	1 cut(s)	315
NmeAIII	GCCGAG	1 cut(s)	374
NmuCI	GTSAC	1 cut(s)	275
PkrI	GCNGC	4 cut(s)	76, 296, 346, 359
PspFI	CCCAGC	2 cut(s)	255, 299
PspN4I	GGNNCC	1 cut(s)	315
PsuI	RGATCY	2 cut(s)	131, 172
SatI	GCNGC	4 cut(s)	75, 295, 345, 358
Sau3AI	GATC	5 cut(s)	131, 172, 210, 221, 321
SetI	ASST	6 cut(s)	47, 140, 201, 342, 346, 419
SfaNI	GCATC	1 cut(s)	391
Sse9I	AATT	2 cut(s)	18, 38
SsiI	CCGC	4 cut(s)	77, 294, 357, 369
SspMI	CTAG	3 cut(s)	135, 305, 341
StyI	CCWWGG	1 cut(s)	436
TasI	AATT	2 cut(s)	18, 38
TauI	GCSGC	2 cut(s)	297, 360
TscAI	CASTG	1 cut(s)	212
TseFI	GTSAC	1 cut(s)	275
TseI	GCWGC	2 cut(s)	74, 344
Tsp45I	GTSAC	1 cut(s)	275
TspRI	CASTG	1 cut(s)	212
XapI	RAATTY	1 cut(s)	38
XspI	CTAG	3 cut(s)	135, 305, 341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.