Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001534

Physical Location & Seq

Genomic Coordinates Reverse (-)

69821654 .. 69822001

Gene Structure 348 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00132820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGTTTAGGTTACTCTCTCTGAGAGGTAGGTGGAGGTCATGGCCTCATGGCAGCGGATATGCAAATTGGGCTGGAGGAGAGGAGATTTCCGTCTCGTCTGGTCTTTGGGAGAAGGAAGGCAGCGGATATCCTCGTCGTTGGCTTCTCAAAATTGGGGGCGGCAGTAAACTCATGTCTCAAATTGGATTCGGGTCATTCTGCATCGAGGATGTTCGGGCTGGAATGCAGTCGGTCACCGGTGCTGGTTGCTGGGTCGCGGAGTGGCGCGCCGGGCGGCTACCTTCTTCGGGCGTTTCTCGGCCAAGTGGATGGGTGTTGATGGCGAATGGTGACTGGTCGTCGCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

115

Amino Acids

12.58

Weight (kDa)

9.88

Isoelectric Point (pI)

60.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001534)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33467 AT4G33467
fragaria_vesca	FvH4_1g13550
malus_domestica	MD02G1150700.v1.1 MD15G1265300.v1.1
prunus_persica	Prupe.7G152300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0101941 RchiOBHm_Chr7g0231621
rosa_laevigata	RLG00000003218 RLG00000003459 RLG00000005525 RLG00000005735 RLG00000008080 RLG00000009250 RLG00000012890 RLG00000014921 RLG00000016044 RLG00000017118 RLG00000017262 RLG00000018139 RLG00000018892 RLG00000019095 RLG00000020815 RLG00000023064 RLG00000024324 RLG00000024611 RLG00000024901 RLG00000025131 RLG00000026573 RLG00000028471 RLG00000029991 RLG00000030471 RLG00000033464 RLG00000033615
rosa_multiflora	Rmu_sc0000697.1_g000010 Rmu_sc0004767.1_g000002 Rmu_sc0012270.1_g000006
rosa_roxburghii	Rroxscaffold_2G00132820 Rroxscaffold_2G00140910 Rroxscaffold_3G00223440 Rroxscaffold_3G00265480 Rroxscaffold_5G00344290
rosa_rugosa	Rorug02G0103200 Rorug05G0210700 Rorug06G0152900
rosa_samantha	Rh2AG151300 Rh2BG156800 Rh2CG156600 Rh2DG156900 Rh6AG272100
rosa_wichuraiana	Rw2G011810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	257, 267
AciI	CCGC	5 cut(s)	54, 123, 159, 257, 274
AcoI	YGGCCR	1 cut(s)	299
AfiI	CCNNNNNNNGG	1 cut(s)	287
AgeI	ACCGGT	1 cut(s)	236
AhdI	GACNNNNNGTC	1 cut(s)	337
Alw26I	GTCTC	2 cut(s)	97, 180
AoxI	GGCC	2 cut(s)	41, 299
ApeKI	GCWGC	2 cut(s)	51, 120
AscI	GGCGCGCC	1 cut(s)	265
AsiGI	ACCGGT	1 cut(s)	236
AspLEI	GCGC	2 cut(s)	267, 269
AsuC2I	CCSGG	1 cut(s)	271
AsuHPI	GGTGA	2 cut(s)	226, 341
BbvI	GCAGC	2 cut(s)	63, 132
BccI	CCATC	2 cut(s)	303, 313
BcnI	CCSGG	1 cut(s)	271
BcoDI	GTCTC	2 cut(s)	97, 180
BisI	GCNGC	4 cut(s)	52, 121, 160, 275
BlsI	GCNGC	4 cut(s)	53, 122, 161, 276
Bme1390I	CCNGG	1 cut(s)	271
BmeRI	GACNNNNNGTC	1 cut(s)	337
BmrFI	CCNGG	1 cut(s)	271
BmsI	GCATC	1 cut(s)	210
BpmI	CTGGAG	1 cut(s)	93
BpuMI	CCSGG	1 cut(s)	271
BsaWI	WCCGGW	1 cut(s)	236
Bsc4I	CCNNNNNNNGG	1 cut(s)	287
Bse118I	RCCGGY	1 cut(s)	236
Bse1I	ACTGG	1 cut(s)	338
BseGI	GGATG	2 cut(s)	214, 314
BseLI	CCNNNNNNNGG	1 cut(s)	287
BseMII	CTCAG	1 cut(s)	11
BseNI	ACTGG	1 cut(s)	338
BsePI	GCGCGC	1 cut(s)	265
BseRI	GAGGAG	2 cut(s)	90, 95
BseXI	GCAGC	2 cut(s)	63, 132
BseYI	CCCAGC	1 cut(s)	249
Bsh1236I	CGCG	2 cut(s)	257, 267
BshFI	GGCC	2 cut(s)	43, 301
BshTI	ACCGGT	1 cut(s)	236
BsiSI	CCGG	2 cut(s)	237, 270
BslI	CCNNNNNNNGG	1 cut(s)	287
BsmAI	GTCTC	2 cut(s)	97, 180
BsmBI	CGTCTC	1 cut(s)	97
BsmI	GAATGC	1 cut(s)	228
BsnI	GGCC	2 cut(s)	43, 301
BspACI	CCGC	5 cut(s)	54, 123, 159, 257, 274
BspANI	GGCC	2 cut(s)	43, 301
BspCNI	CTCAG	1 cut(s)	12
BspFNI	CGCG	2 cut(s)	257, 267
BsrFI	RCCGGY	1 cut(s)	236
BsrI	ACTGG	1 cut(s)	338
BssAI	RCCGGY	1 cut(s)	236
BssHII	GCGCGC	1 cut(s)	265
BstC8I	GCNNGC	1 cut(s)	267
BstDEI	CTNAG	1 cut(s)	20
BstEII	GGTNACC	1 cut(s)	232
BstF5I	GGATG	2 cut(s)	214, 314
BstFNI	CGCG	2 cut(s)	257, 267
BstHHI	GCGC	2 cut(s)	267, 269
BstMAI	GTCTC	2 cut(s)	97, 180
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 271
BstPI	GGTNACC	1 cut(s)	232
BstSCI	CCNGG	1 cut(s)	269
BstUI	CGCG	2 cut(s)	257, 267
BstV1I	GCAGC	2 cut(s)	63, 132
BstXI	CCANNNNNNTGG	1 cut(s)	309
BsuRI	GGCC	2 cut(s)	43, 301
BtsCI	GGATG	2 cut(s)	214, 314
Cac8I	GCNNGC	1 cut(s)	267
CfoI	GCGC	2 cut(s)	267, 269
Cfr10I	RCCGGY	1 cut(s)	236
CspAI	ACCGGT	1 cut(s)	236
CviAII	CATG	3 cut(s)	39, 47, 172
CviJI	RGCY	6 cut(s)	43, 71, 142, 218, 277, 301
CviKI_1	RGCY	6 cut(s)	43, 71, 142, 218, 277, 301
DdeI	CTNAG	1 cut(s)	20
DriI	GACNNNNNGTC	1 cut(s)	337
EaeI	YGGCCR	1 cut(s)	299
Eam1105I	GACNNNNNGTC	1 cut(s)	337
Eco32I	GATATC	1 cut(s)	128
Eco91I	GGTNACC	1 cut(s)	232
EcoO65I	GGTNACC	1 cut(s)	232
EcoRV	GATATC	1 cut(s)	128
Esp3I	CGTCTC	1 cut(s)	97
FaeI	CATG	3 cut(s)	42, 50, 175
FaiI	YATR	4 cut(s)	40, 48, 60, 173
FatI	CATG	3 cut(s)	38, 46, 171
Fnu4HI	GCNGC	4 cut(s)	52, 121, 160, 275
FokI	GGATG	2 cut(s)	221, 321
Fsp4HI	GCNGC	4 cut(s)	52, 121, 160, 275
GlaI	GCGC	2 cut(s)	266, 268
GluI	GCNGC	4 cut(s)	52, 121, 160, 275
GsaI	CCCAGC	1 cut(s)	253
GsuI	CTGGAG	1 cut(s)	93
HaeIII	GGCC	2 cut(s)	43, 301
HapII	CCGG	2 cut(s)	237, 270
HhaI	GCGC	2 cut(s)	267, 269
Hin1II	CATG	3 cut(s)	42, 50, 175
Hin6I	GCGC	2 cut(s)	265, 267
HinP1I	GCGC	2 cut(s)	265, 267
HinfI	GANTC	1 cut(s)	186
HpaII	CCGG	2 cut(s)	237, 270
HphI	GGTGA	2 cut(s)	226, 341
Hpy166II	GTNNAC	1 cut(s)	167
Hpy188I	TCNGA	1 cut(s)	21
Hpy8I	GTNNAC	1 cut(s)	167
Hpy99I	CGWCG	2 cut(s)	138, 343
HpyAV	CCTTC	3 cut(s)	106, 110, 291
HpyCH4V	TGCA	3 cut(s)	62, 201, 226
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 271
HpyF3I	CTNAG	1 cut(s)	20
Hsp92II	CATG	3 cut(s)	42, 50, 175
HspAI	GCGC	2 cut(s)	265, 267
LpnPI	CCDG	8 cut(s)	57, 84, 204, 228, 235, 250, 283, 319
Lsp1109I	GCAGC	2 cut(s)	63, 132
LweI	GCATC	1 cut(s)	210
MaeIII	GTNAC	3 cut(s)	9, 232, 329
MboII	GAAGA	1 cut(s)	276
MluCI	AATT	3 cut(s)	64, 150, 180
MnlI	CCTC	7 cut(s)	17, 27, 54, 68, 73, 141, 199
MspA1I	CMGCKG	2 cut(s)	54, 123
MspI	CCGG	2 cut(s)	237, 270
MspR9I	CCNGG	1 cut(s)	271
Mva1269I	GAATGC	1 cut(s)	228
MvnI	CGCG	2 cut(s)	257, 267
MwoI	GCNNNNNNNGC	2 cut(s)	68, 271
NciI	CCSGG	1 cut(s)	271
NlaIII	CATG	3 cut(s)	42, 50, 175
NmeAIII	GCCGAG	1 cut(s)	277
NmuCI	GTSAC	2 cut(s)	232, 329
PalAI	GGCGCGCC	1 cut(s)	265
PauI	GCGCGC	1 cut(s)	265
PctI	GAATGC	1 cut(s)	228
PfeI	GAWTC	1 cut(s)	186
PinAI	ACCGGT	1 cut(s)	236
PkrI	GCNGC	4 cut(s)	53, 122, 161, 276
PspEI	GGTNACC	1 cut(s)	232
PspFI	CCCAGC	1 cut(s)	249
PteI	GCGCGC	1 cut(s)	265
SatI	GCNGC	4 cut(s)	52, 121, 160, 275
ScrFI	CCNGG	1 cut(s)	271
SetI	ASST	5 cut(s)	11, 28, 32, 38, 283
SfaNI	GCATC	1 cut(s)	210
SgrAI	CRCCGGYG	1 cut(s)	236
SgsI	GGCGCGCC	1 cut(s)	265
Sse9I	AATT	3 cut(s)	64, 150, 180
SsiI	CCGC	5 cut(s)	54, 123, 159, 257, 274
StyD4I	CCNGG	1 cut(s)	269
TaqI	TCGA	1 cut(s)	204
TaqII	GACCGA	1 cut(s)	220
TasI	AATT	3 cut(s)	64, 150, 180
TauI	GCSGC	2 cut(s)	162, 277
TfiI	GAWTC	1 cut(s)	186
TseFI	GTSAC	2 cut(s)	232, 329
TseI	GCWGC	2 cut(s)	51, 120
Tsp45I	GTSAC	2 cut(s)	232, 329
TspGWI	ACGGA	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.