MD02G1150700.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0001534
Physical Location & Seq
Reverse (-)
12402868 .. 12403895
1028 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1150700.v1.1.491

Sequence Viewer

Length: 291 bp
ATGGAAGCTGCTCCAATCCGAATGGATAGGAAAACATCGATAGAAACTGAGCCAAGAACGTTGCGGATAGACCAAATTGAATTTGCAAGGGAGGCAGCCAAGTATGTGGTGAATACAAAGAATATAGAAGAAGCAATGAGCATTTTCACAGAGGGTTTGAAACCAGTAGTTAGTTCGATCAAGCAAAACGGTGATGAAATGATGATAGATTCAGTTGAGGAACCCGAGCACTCGGATGATTATTTCATAAGACCACGAGGACCCCAGGATGTTGTCTCAGCTCCTTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

10.94

Weight (kDa)

4.66

Isoelectric Point (pI)

62.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 64
AclI AACGTT 1 cut(s) 59
AcsI RAATTY 1 cut(s) 80
AgsI TTSAA 2 cut(s) 80, 160
AjnI CCWGG 1 cut(s) 264
AluBI AGCT 2 cut(s) 8, 281
AluI AGCT 2 cut(s) 8, 281
Alw21I GWGCWC 1 cut(s) 231
Alw26I GTCTC 1 cut(s) 280
Ama87I CYCGRG 1 cut(s) 224
ApeKI GCWGC 2 cut(s) 8, 95
ApoI RAATTY 1 cut(s) 80
AspS9I GGNCC 1 cut(s) 260
AsuHPI GGTGA 2 cut(s) 121, 203
AvaI CYCGRG 1 cut(s) 224
AvaII GGWCC 1 cut(s) 260
BauI CACGAG 1 cut(s) 255
Bbv12I GWGCWC 1 cut(s) 231
BbvI GCAGC 1 cut(s) 107
BciT130I CCWGG 1 cut(s) 266
BcoDI GTCTC 1 cut(s) 280
BisI GCNGC 2 cut(s) 9, 96
BlsI GCNGC 2 cut(s) 10, 97
Bme1390I CCNGG 1 cut(s) 266
Bme18I GGWCC 1 cut(s) 260
BmeT110I CYCGRG 1 cut(s) 224
BmgT120I GGNCC 1 cut(s) 260
BmiI GGNNCC 2 cut(s) 222, 262
BmrFI CCNGG 1 cut(s) 266
Bsa29I ATCGAT 1 cut(s) 38
BsaJI CCNNGG 1 cut(s) 264
Bse1I ACTGG 1 cut(s) 164
Bse3DI GCAATG 1 cut(s) 141
BseBI CCWGG 1 cut(s) 266
BseCI ATCGAT 1 cut(s) 38
BseDI CCNNGG 1 cut(s) 264
BseGI GGATG 2 cut(s) 241, 274
BseMI GCAATG 1 cut(s) 141
BseMII CTCAG 2 cut(s) 39, 291
BseNI ACTGG 1 cut(s) 164
BseXI GCAGC 1 cut(s) 107
BshVI ATCGAT 1 cut(s) 38
BsiHKAI GWGCWC 1 cut(s) 231
BsiHKCI CYCGRG 1 cut(s) 224
BsmAI GTCTC 1 cut(s) 280
BsoBI CYCGRG 1 cut(s) 224
Bsp1286I GDGCHC 1 cut(s) 231
Bsp143I GATC 1 cut(s) 177
BspACI CCGC 1 cut(s) 64
BspCNI CTCAG 2 cut(s) 40, 290
BspDI ATCGAT 1 cut(s) 38
BspLI GGNNCC 2 cut(s) 222, 262
BsrDI GCAATG 1 cut(s) 141
BsrI ACTGG 1 cut(s) 164
BssECI CCNNGG 1 cut(s) 264
BssMI GATC 1 cut(s) 177
BssSI CACGAG 1 cut(s) 255
Bst2BI CACGAG 1 cut(s) 255
Bst2UI CCWGG 1 cut(s) 266
Bst4CI ACNGT 1 cut(s) 191
BstDEI CTNAG 2 cut(s) 48, 277
BstF5I GGATG 2 cut(s) 241, 274
BstKTI GATC 1 cut(s) 180
BstMAI GTCTC 1 cut(s) 280
BstMBI GATC 1 cut(s) 177
BstMWI GCNNNNNNNGC 1 cut(s) 92
BstNI CCWGG 1 cut(s) 266
BstSCI CCNGG 1 cut(s) 264
BstV1I GCAGC 1 cut(s) 107
BstXI CCANNNNNNTGG 1 cut(s) 106
Bsu15I ATCGAT 1 cut(s) 38
BsuTUI ATCGAT 1 cut(s) 38
BtsCI GGATG 2 cut(s) 241, 274
Cfr13I GGNCC 1 cut(s) 260
ClaI ATCGAT 1 cut(s) 38
CviJI RGCY 4 cut(s) 8, 52, 98, 281
CviKI_1 RGCY 4 cut(s) 8, 52, 98, 281
DdeI CTNAG 2 cut(s) 48, 277
DpnI GATC 1 cut(s) 179
DpnII GATC 1 cut(s) 177
Eco47I GGWCC 1 cut(s) 260
Eco88I CYCGRG 1 cut(s) 224
EcoO109I RGGNCCY 1 cut(s) 260
EcoRII CCWGG 1 cut(s) 264
FaiI YATR 3 cut(s) 105, 125, 248
Fnu4HI GCNGC 2 cut(s) 9, 96
FokI GGATG 2 cut(s) 248, 281
Fsp4HI GCNGC 2 cut(s) 9, 96
GluI GCNGC 2 cut(s) 9, 96
HinfI GANTC 1 cut(s) 209
HphI GGTGA 2 cut(s) 121, 203
Hpy188I TCNGA 2 cut(s) 20, 235
HpyCH4III ACNGT 1 cut(s) 191
HpyCH4IV ACGT 1 cut(s) 59
HpyCH4V TGCA 1 cut(s) 86
HpyF10VI GCNNNNNNNGC 1 cut(s) 92
HpyF3I CTNAG 2 cut(s) 48, 277
HpySE526I ACGT 1 cut(s) 59
Kzo9I GATC 1 cut(s) 177
LmnI GCTCC 2 cut(s) 16, 286
LpnPI CCDG 3 cut(s) 177, 251, 278
Lsp1109I GCAGC 1 cut(s) 107
MaeII ACGT 1 cut(s) 59
MalI GATC 1 cut(s) 179
MboI GATC 1 cut(s) 177
MboII GAAGA 1 cut(s) 140
MhlI GDGCHC 1 cut(s) 231
MluCI AATT 2 cut(s) 75, 80
MnlI CCTC 4 cut(s) 85, 145, 211, 251
MslI CAYNNNNRTG 1 cut(s) 234
MspR9I CCNGG 1 cut(s) 266
MvaI CCWGG 1 cut(s) 266
MwoI GCNNNNNNNGC 1 cut(s) 92
NdeII GATC 1 cut(s) 177
NlaIV GGNNCC 2 cut(s) 222, 262
PfeI GAWTC 1 cut(s) 209
PkrI GCNGC 2 cut(s) 10, 97
PpuMI RGGWCCY 1 cut(s) 260
Psp1406I AACGTT 1 cut(s) 59
Psp5II RGGWCCY 1 cut(s) 260
Psp6I CCWGG 1 cut(s) 264
PspGI CCWGG 1 cut(s) 264
PspN4I GGNNCC 2 cut(s) 222, 262
PspPI GGNCC 1 cut(s) 260
PspPPI RGGWCCY 1 cut(s) 260
RseI CAYNNNNRTG 1 cut(s) 234
SatI GCNGC 2 cut(s) 9, 96
Sau3AI GATC 1 cut(s) 177
Sau96I GGNCC 1 cut(s) 260
ScrFI CCNGG 1 cut(s) 266
SduI GDGCHC 1 cut(s) 231
SetI ASST 3 cut(s) 10, 62, 283
SinI GGWCC 1 cut(s) 260
SmiMI CAYNNNNRTG 1 cut(s) 234
Sse9I AATT 2 cut(s) 75, 80
SsiI CCGC 1 cut(s) 64
StyD4I CCNGG 1 cut(s) 264
TaaI ACNGT 1 cut(s) 191
TaiI ACGT 1 cut(s) 62
TaqI TCGA 2 cut(s) 38, 176
TasI AATT 2 cut(s) 75, 80
TfiI GAWTC 1 cut(s) 209
TseI GCWGC 2 cut(s) 8, 95
TspDTI ATGAA 2 cut(s) 210, 235
VpaK11BI GGWCC 1 cut(s) 260
XapI RAATTY 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.