Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001534

Physical Location & Seq

Genomic Coordinates Forward (+)

58873396 .. 58873713

Gene Structure 318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00265480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGCTTTGCCGGTGGTGGGGGCTGTTGGCGGATGGTGACATCGATGATGATGGTGGGGTCGGGCTAGCAATGGCGCCACCAATCTGTGCTAGAGTGGAGCGGGCTGTAGTTGGGAGCGACAAAGATGGCGGTGGGAGGTGGTGGAAGACTTCCTCGGTCCGTGTCATCAAATGGAGGTGGACCGGTACTCCGTCGGGCTGGGTTTGGGTATCCATGGGTTTGGGTGGCCTTAGCAAGTCCAGTTGGGCTTTGAACCCTTTTGGACCTCATGCTAGGGTTTCCCTTTCTTTTGGGCCTCTGCACTGGCACATGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

105

Amino Acids

11.52

Weight (kDa)

8.8

Isoelectric Point (pI)

34.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001534)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33467 AT4G33467
fragaria_vesca	FvH4_1g13550
malus_domestica	MD02G1150700.v1.1 MD15G1265300.v1.1
prunus_persica	Prupe.7G152300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0101941 RchiOBHm_Chr7g0231621
rosa_laevigata	RLG00000003218 RLG00000003459 RLG00000005525 RLG00000005735 RLG00000008080 RLG00000009250 RLG00000012890 RLG00000014921 RLG00000016044 RLG00000017118 RLG00000017262 RLG00000018139 RLG00000018892 RLG00000019095 RLG00000020815 RLG00000023064 RLG00000024324 RLG00000024611 RLG00000024901 RLG00000025131 RLG00000026573 RLG00000028471 RLG00000029991 RLG00000030471 RLG00000033464 RLG00000033615
rosa_multiflora	Rmu_sc0000697.1_g000010 Rmu_sc0004767.1_g000002 Rmu_sc0012270.1_g000006
rosa_roxburghii	Rroxscaffold_2G00132820 Rroxscaffold_2G00140910 Rroxscaffold_3G00223440 Rroxscaffold_3G00265480 Rroxscaffold_5G00344290
rosa_rugosa	Rorug02G0103200 Rorug05G0210700 Rorug06G0152900
rosa_samantha	Rh2AG151300 Rh2BG156800 Rh2CG156600 Rh2DG156900 Rh6AG272100
rosa_wichuraiana	Rw2G011810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	73
AccBSI	CCGCTC	1 cut(s)	100
AciI	CCGC	3 cut(s)	29, 100, 129
AcyI	GRCGYC	1 cut(s)	74
AfaI	GTAC	1 cut(s)	187
AfiI	CCNNNNNNNGG	1 cut(s)	16
AgeI	ACCGGT	1 cut(s)	182
AgsI	TTSAA	1 cut(s)	253
AoxI	GGCC	2 cut(s)	226, 293
AsiGI	ACCGGT	1 cut(s)	182
AspLEI	GCGC	1 cut(s)	76
AspS9I	GGNCC	4 cut(s)	157, 180, 263, 293
AsuHPI	GGTGA	1 cut(s)	47
AsuNHI	GCTAGC	1 cut(s)	64
AvaII	GGWCC	3 cut(s)	157, 180, 263
BanI	GGYRCC	1 cut(s)	73
BbsI	GAAGAC	1 cut(s)	152
BccI	CCATC	3 cut(s)	26, 44, 119
BciVI	GTATCC	1 cut(s)	220
BfaI	CTAG	3 cut(s)	65, 90, 273
BfmI	CTRYAG	1 cut(s)	105
BfoI	RGCGCY	1 cut(s)	77
BfuI	GTATCC	1 cut(s)	220
Bme18I	GGWCC	3 cut(s)	157, 180, 263
BmgT120I	GGNCC	4 cut(s)	157, 180, 263, 293
BmiI	GGNNCC	1 cut(s)	75
BmtI	GCTAGC	1 cut(s)	68
BpiI	GAAGAC	1 cut(s)	152
Bpu10I	CCTNAGC	1 cut(s)	230
Bsa29I	ATCGAT	1 cut(s)	42
BsaHI	GRCGYC	1 cut(s)	74
BsaJI	CCNNGG	2 cut(s)	153, 213
BsaWI	WCCGGW	1 cut(s)	182
BsaXI	ACNNNNNCTCC	2 cut(s)	172, 202
Bsc4I	CCNNNNNNNGG	1 cut(s)	16
Bse118I	RCCGGY	2 cut(s)	9, 182
Bse1I	ACTGG	2 cut(s)	240, 308
Bse3DI	GCAATG	1 cut(s)	75
BseCI	ATCGAT	1 cut(s)	42
BseDI	CCNNGG	2 cut(s)	153, 213
BseGI	GGATG	1 cut(s)	37
BseLI	CCNNNNNNNGG	1 cut(s)	16
BseMI	GCAATG	1 cut(s)	75
BseNI	ACTGG	2 cut(s)	240, 308
BseYI	CCCAGC	1 cut(s)	198
BsgI	GTGCAG	1 cut(s)	284
BshFI	GGCC	2 cut(s)	228, 295
BshNI	GGYRCC	1 cut(s)	73
BshTI	ACCGGT	1 cut(s)	182
BshVI	ATCGAT	1 cut(s)	42
BsiSI	CCGG	2 cut(s)	10, 183
BslI	CCNNNNNNNGG	1 cut(s)	16
BsnI	GGCC	2 cut(s)	228, 295
Bsp19I	CCATGG	1 cut(s)	213
BspACI	CCGC	3 cut(s)	29, 100, 129
BspANI	GGCC	2 cut(s)	228, 295
BspDI	ATCGAT	1 cut(s)	42
BspLI	GGNNCC	1 cut(s)	75
BspOI	GCTAGC	1 cut(s)	68
BspT107I	GGYRCC	1 cut(s)	73
BsrBI	CCGCTC	1 cut(s)	100
BsrDI	GCAATG	1 cut(s)	75
BsrFI	RCCGGY	2 cut(s)	9, 182
BsrI	ACTGG	2 cut(s)	240, 308
BssAI	RCCGGY	2 cut(s)	9, 182
BssECI	CCNNGG	2 cut(s)	153, 213
BssNI	GRCGYC	1 cut(s)	74
BssT1I	CCWWGG	1 cut(s)	213
BstACI	GRCGYC	1 cut(s)	74
BstC8I	GCNNGC	2 cut(s)	66, 102
BstDEI	CTNAG	1 cut(s)	230
BstDSI	CCRYGG	1 cut(s)	213
BstF5I	GGATG	1 cut(s)	37
BstH2I	RGCGCY	1 cut(s)	77
BstHHI	GCGC	1 cut(s)	76
BstSFI	CTRYAG	1 cut(s)	105
BstV2I	GAAGAC	1 cut(s)	152
BstXI	CCANNNNNNTGG	1 cut(s)	220
Bsu15I	ATCGAT	1 cut(s)	42
BsuI	GTATCC	1 cut(s)	220
BsuRI	GGCC	2 cut(s)	228, 295
BsuTUI	ATCGAT	1 cut(s)	42
BtgI	CCRYGG	1 cut(s)	213
BtsCI	GGATG	1 cut(s)	37
BtsIMutI	CAGTG	1 cut(s)	301
Cac8I	GCNNGC	2 cut(s)	66, 102
CfoI	GCGC	1 cut(s)	76
Cfr10I	RCCGGY	2 cut(s)	9, 182
Cfr13I	GGNCC	4 cut(s)	157, 180, 263, 293
ClaI	ATCGAT	1 cut(s)	42
CpoI	CGGWCCG	1 cut(s)	157
Csp6I	GTAC	1 cut(s)	186
CspAI	ACCGGT	1 cut(s)	182
CspI	CGGWCCG	1 cut(s)	157
CviAII	CATG	3 cut(s)	214, 269, 310
CviJI	RGCY	7 cut(s)	22, 64, 104, 198, 228, 248, 295
CviKI_1	RGCY	7 cut(s)	22, 64, 104, 198, 228, 248, 295
CviQI	GTAC	1 cut(s)	186
DdeI	CTNAG	1 cut(s)	230
DinI	GGCGCC	1 cut(s)	75
EciI	GGCGGA	1 cut(s)	44
Eco130I	CCWWGG	1 cut(s)	213
Eco47I	GGWCC	3 cut(s)	157, 180, 263
EcoT14I	CCWWGG	1 cut(s)	213
EgeI	GGCGCC	1 cut(s)	75
EheI	GGCGCC	1 cut(s)	75
ErhI	CCWWGG	1 cut(s)	213
FaeI	CATG	3 cut(s)	217, 272, 313
FaiI	YATR	3 cut(s)	215, 270, 311
FatI	CATG	3 cut(s)	213, 268, 309
FauI	CCCGC	1 cut(s)	93
FokI	GGATG	1 cut(s)	44
FspBI	CTAG	3 cut(s)	65, 90, 273
GlaI	GCGC	1 cut(s)	75
GsaI	CCCAGC	1 cut(s)	202
HaeII	RGCGCY	1 cut(s)	77
HaeIII	GGCC	2 cut(s)	228, 295
HapII	CCGG	2 cut(s)	10, 183
HhaI	GCGC	1 cut(s)	76
Hin1I	GRCGYC	1 cut(s)	74
Hin1II	CATG	3 cut(s)	217, 272, 313
Hin6I	GCGC	1 cut(s)	74
HinP1I	GCGC	1 cut(s)	74
HpaII	CCGG	2 cut(s)	10, 183
HphI	GGTGA	1 cut(s)	47
Hpy166II	GTNNAC	1 cut(s)	180
Hpy8I	GTNNAC	1 cut(s)	180
Hpy99I	CGWCG	1 cut(s)	196
HpyCH4V	TGCA	1 cut(s)	301
HpyF3I	CTNAG	1 cut(s)	230
Hsp92I	GRCGYC	1 cut(s)	74
Hsp92II	CATG	3 cut(s)	217, 272, 313
HspAI	GCGC	1 cut(s)	74
KasI	GGCGCC	1 cut(s)	73
LmnI	GCTCC	2 cut(s)	97, 114
LpnPI	CCDG	5 cut(s)	23, 184, 196, 253, 289
MaeI	CTAG	3 cut(s)	65, 90, 273
MaeIII	GTNAC	1 cut(s)	35
MbiI	CCGCTC	1 cut(s)	100
MboII	GAAGA	1 cut(s)	157
Mly113I	GGCGCC	1 cut(s)	74
MnlI	CCTC	5 cut(s)	129, 163, 168, 276, 306
MspI	CCGG	2 cut(s)	10, 183
NarI	GGCGCC	1 cut(s)	74
NcoI	CCATGG	1 cut(s)	213
NheI	GCTAGC	1 cut(s)	64
NlaIII	CATG	3 cut(s)	217, 272, 313
NlaIV	GGNNCC	1 cut(s)	75
NmuCI	GTSAC	1 cut(s)	35
PinAI	ACCGGT	1 cut(s)	182
PluTI	GGCGCC	1 cut(s)	77
PspFI	CCCAGC	1 cut(s)	198
PspN4I	GGNNCC	1 cut(s)	75
PspPI	GGNCC	4 cut(s)	157, 180, 263, 293
RsaI	GTAC	1 cut(s)	187
RsaNI	GTAC	1 cut(s)	186
Rsr2I	CGGWCCG	1 cut(s)	157
RsrII	CGGWCCG	1 cut(s)	157
Sau96I	GGNCC	4 cut(s)	157, 180, 263, 293
SetI	ASST	3 cut(s)	140, 179, 268
SfcI	CTRYAG	1 cut(s)	105
SfoI	GGCGCC	1 cut(s)	75
SinI	GGWCC	3 cut(s)	157, 180, 263
SsiI	CCGC	3 cut(s)	29, 100, 129
SspDI	GGCGCC	1 cut(s)	73
SspMI	CTAG	3 cut(s)	65, 90, 273
StyI	CCWWGG	1 cut(s)	213
TaqI	TCGA	1 cut(s)	42
TaqII	GACCGA	1 cut(s)	145
TscAI	CASTG	1 cut(s)	308
TseFI	GTSAC	1 cut(s)	35
Tsp45I	GTSAC	1 cut(s)	35
TspGWI	ACGGA	2 cut(s)	149, 180
TspRI	CASTG	1 cut(s)	308
VpaK11BI	GGWCC	3 cut(s)	157, 180, 263
XspI	CTAG	3 cut(s)	65, 90, 273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.