RLG00000016044

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001534
Physical Location & Seq
Forward (+)
3420909 .. 3421394
486 bp
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UTR
Exon/CDS
Intron
RLM00000016044

Sequence Viewer

Length: 486 bp
ATGTCTAGGTTACTCTCTCTGAGAGGTAGGTGGAGGTCGTGGCCTCCTGGCGGAGGTTCTGCAAATTGGGTTAGAGGAGATGGGGTTTCCTTCTCGTCTAGTCGCTGGGGGATTGAGGATGGCGGGGTTCCCCGTCTTCGGATTCTCAAAATTGGGGGCAATGAAGAGCTTCTGCCTAGGGTGGCTTTTCACGGCAGCTGCAATGGTTTCAGGTCTTTCTTGACCCGAGATGTTTTGGAAGGTTTGGCTCGTAGGGTCGCGGAGTGGAGCACTGGGGGGAGGTCTGCCTCCTCGGGATTTCGTTTTGTGCCAGGCGGCTGGGCGGGGATAGTGGCTGATGACTGGTCACCGTACAAGGAGGCTTGCGTGGCCGGGCTAACAGATGCAGTGCTGATCAGTGCTGGAGCGGGGTTGGTTGCTGCTGGGAGGGGCAACGATGGCGACGACCAGCGGTGGATGACCTCCCAGTCCAGCGTTGTCGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

162

Amino Acids

17.15

Weight (kDa)

9.37

Isoelectric Point (pI)

60.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 466
AccBSI CCGCTC 1 cut(s) 407
AccI GTMKAC 1 cut(s) 480
AccII CGCG 1 cut(s) 260
AciI CCGC 7 cut(s) 51, 123, 260, 315, 323, 407, 451
AcoI YGGCCR 1 cut(s) 369
AfaI GTAC 1 cut(s) 353
AfiI CCNNNNNNNGG 3 cut(s) 50, 53, 138
AjnI CCWGG 2 cut(s) 46, 310
AluBI AGCT 2 cut(s) 169, 198
AluI AGCT 2 cut(s) 169, 198
Alw21I GWGCWC 1 cut(s) 272
Ama87I CYCGRG 2 cut(s) 225, 292
AoxI GGCC 2 cut(s) 41, 369
ApeKI GCWGC 3 cut(s) 195, 198, 419
Asp700I GAANNNNTTC 1 cut(s) 168
AspA2I CCTAGG 1 cut(s) 176
AsuC2I CCSGG 1 cut(s) 373
AsuHPI GGTGA 1 cut(s) 339
AvaI CYCGRG 2 cut(s) 225, 292
AvrII CCTAGG 1 cut(s) 176
BbsI GAAGAC 1 cut(s) 128
Bbv12I GWGCWC 1 cut(s) 272
BbvI GCAGC 3 cut(s) 185, 207, 406
BccI CCATC 3 cut(s) 74, 113, 431
BceAI ACGGC 1 cut(s) 208
BciT130I CCWGG 2 cut(s) 48, 312
BclI TGATCA 1 cut(s) 393
BcnI CCSGG 1 cut(s) 373
BfaI CTAG 4 cut(s) 6, 99, 177, 484
BisI GCNGC 4 cut(s) 196, 199, 316, 420
BlnI CCTAGG 1 cut(s) 176
BlsI GCNGC 4 cut(s) 197, 200, 317, 421
Bme1390I CCNGG 3 cut(s) 48, 312, 373
BmeT110I CYCGRG 2 cut(s) 225, 292
BmiI GGNNCC 1 cut(s) 129
BmrFI CCNGG 3 cut(s) 48, 312, 373
BmrI ACTGGG 2 cut(s) 282, 460
BmsI GCATC 1 cut(s) 373
BmuI ACTGGG 2 cut(s) 282, 460
BpiI GAAGAC 1 cut(s) 128
BpmI CTGGAG 1 cut(s) 423
BpuMI CCSGG 1 cut(s) 373
BsaJI CCNNGG 2 cut(s) 176, 291
BsaXI ACNNNNNCTCC 2 cut(s) 69, 99
Bsc4I CCNNNNNNNGG 3 cut(s) 50, 53, 138
Bse1I ACTGG 3 cut(s) 277, 347, 466
Bse3DI GCAATG 2 cut(s) 166, 208
BseBI CCWGG 2 cut(s) 48, 312
BseDI CCNNGG 2 cut(s) 176, 291
BseGI GGATG 2 cut(s) 124, 462
BseLI CCNNNNNNNGG 3 cut(s) 50, 53, 138
BseMI GCAATG 2 cut(s) 166, 208
BseMII CTCAG 1 cut(s) 11
BseNI ACTGG 3 cut(s) 277, 347, 466
BseRI GAGGAG 2 cut(s) 90, 280
BseXI GCAGC 3 cut(s) 185, 207, 406
BseYI CCCAGC 3 cut(s) 105, 318, 422
Bsh1236I CGCG 1 cut(s) 260
BshFI GGCC 2 cut(s) 43, 371
BsiHKAI GWGCWC 1 cut(s) 272
BsiHKCI CYCGRG 2 cut(s) 225, 292
BsiSI CCGG 1 cut(s) 372
BslI CCNNNNNNNGG 3 cut(s) 50, 53, 138
BsnI GGCC 2 cut(s) 43, 371
BsoBI CYCGRG 2 cut(s) 225, 292
Bsp1286I GDGCHC 1 cut(s) 272
Bsp143I GATC 1 cut(s) 393
BspACI CCGC 7 cut(s) 51, 123, 260, 315, 323, 407, 451
BspANI GGCC 2 cut(s) 43, 371
BspCNI CTCAG 1 cut(s) 12
BspFNI CGCG 1 cut(s) 260
BspLI GGNNCC 1 cut(s) 129
BspQI GCTCTTC 1 cut(s) 159
BsrBI CCGCTC 1 cut(s) 407
BsrDI GCAATG 2 cut(s) 166, 208
BsrI ACTGG 3 cut(s) 277, 347, 466
BssECI CCNNGG 2 cut(s) 176, 291
BssMI GATC 1 cut(s) 393
BssT1I CCWWGG 1 cut(s) 176
Bst2UI CCWGG 2 cut(s) 48, 312
Bst4CI ACNGT 1 cut(s) 351
Bst6I CTCTTC 1 cut(s) 159
BstC8I GCNNGC 1 cut(s) 364
BstDEI CTNAG 1 cut(s) 20
BstEII GGTNACC 1 cut(s) 345
BstENI CCTNNNNNAGG 1 cut(s) 51
BstF5I GGATG 2 cut(s) 124, 462
BstFNI CGCG 1 cut(s) 260
BstKTI GATC 1 cut(s) 396
BstMBI GATC 1 cut(s) 393
BstMWI GCNNNNNNNGC 2 cut(s) 368, 438
BstNI CCWGG 2 cut(s) 48, 312
BstPI GGTNACC 1 cut(s) 345
BstSCI CCNGG 3 cut(s) 46, 310, 371
BstUI CGCG 1 cut(s) 260
BstV1I GCAGC 3 cut(s) 185, 207, 406
BstV2I GAAGAC 1 cut(s) 128
BstXI CCANNNNNNTGG 1 cut(s) 318
BsuRI GGCC 2 cut(s) 43, 371
BtsCI GGATG 2 cut(s) 124, 462
BtsI GCAGTG 1 cut(s) 393
BtsIMutI CAGTG 3 cut(s) 270, 393, 403
Cac8I GCNNGC 1 cut(s) 364
Csp6I GTAC 1 cut(s) 352
CviQI GTAC 1 cut(s) 352
DdeI CTNAG 1 cut(s) 20
DpnI GATC 1 cut(s) 395
DpnII GATC 1 cut(s) 393
DrdI GACNNNNNNGTC 1 cut(s) 466
DseDI GACNNNNNNGTC 1 cut(s) 466
EaeI YGGCCR 1 cut(s) 369
Eam1104I CTCTTC 1 cut(s) 159
EarI CTCTTC 1 cut(s) 159
EciI GGCGGA 1 cut(s) 66
Eco130I CCWWGG 1 cut(s) 176
Eco88I CYCGRG 2 cut(s) 225, 292
Eco91I GGTNACC 1 cut(s) 345
EcoNI CCTNNNNNAGG 1 cut(s) 51
EcoO65I GGTNACC 1 cut(s) 345
EcoRII CCWGG 2 cut(s) 46, 310
EcoT14I CCWWGG 1 cut(s) 176
ErhI CCWWGG 1 cut(s) 176
FauI CCCGC 3 cut(s) 116, 316, 400
FbaI TGATCA 1 cut(s) 393
FblI GTMKAC 1 cut(s) 480
Fnu4HI GCNGC 4 cut(s) 196, 199, 316, 420
FokI GGATG 2 cut(s) 131, 469
Fsp4HI GCNGC 4 cut(s) 196, 199, 316, 420
FspBI CTAG 4 cut(s) 6, 99, 177, 484
GluI GCNGC 4 cut(s) 196, 199, 316, 420
GsaI CCCAGC 3 cut(s) 109, 322, 426
GsuI CTGGAG 1 cut(s) 423
HaeIII GGCC 2 cut(s) 43, 371
HapII CCGG 1 cut(s) 372
HincII GTYRAC 1 cut(s) 481
HindII GTYRAC 1 cut(s) 481
HinfI GANTC 1 cut(s) 142
HpaII CCGG 1 cut(s) 372
HphI GGTGA 1 cut(s) 339
Hpy166II GTNNAC 1 cut(s) 481
Hpy188I TCNGA 2 cut(s) 21, 141
Hpy188III TCNNGA 2 cut(s) 220, 294
Hpy8I GTNNAC 1 cut(s) 481
Hpy99I CGWCG 1 cut(s) 446
HpyAV CCTTC 2 cut(s) 100, 233
HpyCH4III ACNGT 1 cut(s) 351
HpyCH4V TGCA 3 cut(s) 62, 201, 386
HpyF10VI GCNNNNNNNGC 2 cut(s) 368, 438
HpyF3I CTNAG 1 cut(s) 20
Ksp22I TGATCA 1 cut(s) 393
Kzo9I GATC 1 cut(s) 393
LguI GCTCTTC 1 cut(s) 159
LmnI GCTCC 2 cut(s) 267, 404
Lsp1109I GCAGC 3 cut(s) 185, 207, 406
LweI GCATC 1 cut(s) 373
MaeI CTAG 4 cut(s) 6, 99, 177, 484
MaeIII GTNAC 2 cut(s) 9, 345
MalI GATC 1 cut(s) 395
MbiI CCGCTC 1 cut(s) 407
MboI GATC 1 cut(s) 393
MboII GAAGA 2 cut(s) 128, 176
MhlI GDGCHC 1 cut(s) 272
MluCI AATT 2 cut(s) 64, 150
MroXI GAANNNNTTC 1 cut(s) 168
MspA1I CMGCKG 2 cut(s) 198, 451
MspI CCGG 1 cut(s) 372
MspR9I CCNGG 3 cut(s) 48, 312, 373
MvaI CCWGG 2 cut(s) 48, 312
MvnI CGCG 1 cut(s) 260
MwoI GCNNNNNNNGC 2 cut(s) 368, 438
NciI CCSGG 1 cut(s) 373
NdeII GATC 1 cut(s) 393
NlaIV GGNNCC 1 cut(s) 129
NmuCI GTSAC 1 cut(s) 345
PciSI GCTCTTC 1 cut(s) 159
PcsI WCGNNNNNNNCGW 1 cut(s) 441
PdmI GAANNNNTTC 1 cut(s) 168
PfeI GAWTC 1 cut(s) 142
PkrI GCNGC 4 cut(s) 197, 200, 317, 421
Psp6I CCWGG 2 cut(s) 46, 310
PspEI GGTNACC 1 cut(s) 345
PspFI CCCAGC 3 cut(s) 105, 318, 422
PspGI CCWGG 2 cut(s) 46, 310
PspN4I GGNNCC 1 cut(s) 129
PvuII CAGCTG 1 cut(s) 198
RsaI GTAC 1 cut(s) 353
RsaNI GTAC 1 cut(s) 352
SalI GTCGAC 1 cut(s) 479
SapI GCTCTTC 1 cut(s) 159
SatI GCNGC 4 cut(s) 196, 199, 316, 420
Sau3AI GATC 1 cut(s) 393
ScrFI CCNGG 3 cut(s) 48, 312, 373
SduI GDGCHC 1 cut(s) 272
SfaNI GCATC 1 cut(s) 373
Sse9I AATT 2 cut(s) 64, 150
SsiI CCGC 7 cut(s) 51, 123, 260, 315, 323, 407, 451
SspMI CTAG 4 cut(s) 6, 99, 177, 484
StyD4I CCNGG 3 cut(s) 46, 310, 371
StyI CCWWGG 1 cut(s) 176
TaaI ACNGT 1 cut(s) 351
TaqI TCGA 1 cut(s) 480
TasI AATT 2 cut(s) 64, 150
TauI GCSGC 1 cut(s) 318
TfiI GAWTC 1 cut(s) 142
TscAI CASTG 3 cut(s) 277, 393, 403
TseFI GTSAC 1 cut(s) 345
TseI GCWGC 3 cut(s) 195, 198, 419
Tsp45I GTSAC 1 cut(s) 345
TspDTI ATGAA 1 cut(s) 177
TspRI CASTG 3 cut(s) 277, 393, 403
XagI CCTNNNNNAGG 1 cut(s) 51
XmaJI CCTAGG 1 cut(s) 176
XmiI GTMKAC 1 cut(s) 480
XmnI GAANNNNTTC 1 cut(s) 168
XspI CTAG 4 cut(s) 6, 99, 177, 484
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.