Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000697.1

Orthogroup ID

OG0001534

Physical Location & Seq

Genomic Coordinates Forward (+)

95343 .. 97383

Gene Structure 2041 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000697.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

atgtttaggttactctctctgagaggtaggtggagactgtggcctcctggcggcggatctgcaaattgggctggaggagatggggtttccttctcgtctagtcgctgggggattgaggatggcggggttccccgtcgtcggattcttaaaattggggccactgaagagcttctgtttcgggtggcttttcaaggcaacgacaatggattcgggtctttcttggcccgggatgcttgggaaggtttggctcgtcggggagcggagtggaccgccggggggaggtgtgcctccttgggatttctttctgtgccaggcggctgggcggtgaaggtggcgggggactggtcgtcatacaaggaggtttgtgtggccgggctaactgatgcagcactgatccgtgctggagcggggttggctgctgctgggagaggcgacaatggcgacgtccagcgggggatgacctttccctgcggcgtagtcgactggaggcgatctggtgtgctgccgtacttgtttggggtgcccatgagtttgggtggccttagcaggaagaaggtttttcagggtggtgcttggaattttgagaaggcattaatatgctttgaggaatatgatgatggcatcactcttatgattcagaattcgatgaagcacgttaggttttgggtgaagattgctgagatacctcctgcatatgaagaacctagcaacttcaaactcattcgtaatttgctatgtgggtttttgaataacatggccagggccggtcctgagattgtagaggcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

262

Amino Acids

28.44

Weight (kDa)

9.22

Isoelectric Point (pI)

41.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001534)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33467 AT4G33467
fragaria_vesca	FvH4_1g13550
malus_domestica	MD02G1150700.v1.1 MD15G1265300.v1.1
prunus_persica	Prupe.7G152300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0101941 RchiOBHm_Chr7g0231621
rosa_laevigata	RLG00000003218 RLG00000003459 RLG00000005525 RLG00000005735 RLG00000008080 RLG00000009250 RLG00000012890 RLG00000014921 RLG00000016044 RLG00000017118 RLG00000017262 RLG00000018139 RLG00000018892 RLG00000019095 RLG00000020815 RLG00000023064 RLG00000024324 RLG00000024611 RLG00000024901 RLG00000025131 RLG00000026573 RLG00000028471 RLG00000029991 RLG00000030471 RLG00000033464 RLG00000033615
rosa_multiflora	Rmu_sc0000697.1_g000010 Rmu_sc0004767.1_g000002 Rmu_sc0012270.1_g000006
rosa_roxburghii	Rroxscaffold_2G00132820 Rroxscaffold_2G00140910 Rroxscaffold_3G00223440 Rroxscaffold_3G00265480 Rroxscaffold_5G00344290
rosa_rugosa	Rorug02G0103200 Rorug05G0210700 Rorug06G0152900
rosa_samantha	Rh2AG151300 Rh2BG156800 Rh2CG156600 Rh2DG156900 Rh6AG272100
rosa_wichuraiana	Rw2G011810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	447
AccB1I	GGYRCC	1 cut(s)	520
AccBSI	CCGCTC	2 cut(s)	260, 407
AccI	GTMKAC	1 cut(s)	480
AclWI	GGATC	2 cut(s)	64, 388
AcoI	YGGCCR	2 cut(s)	369, 756
AcsI	RAATTY	2 cut(s)	577, 640
AcuI	CTGAAG	1 cut(s)	183
AcyI	GRCGYC	1 cut(s)	444
AfaI	GTAC	1 cut(s)	509
AfiI	CCNNNNNNNGG	5 cut(s)	50, 53, 138, 276, 279
AgsI	TTSAA	3 cut(s)	191, 715, 748
AhdI	GACNNNNNGTC	1 cut(s)	346
AjnI	CCWGG	3 cut(s)	46, 310, 758
AluBI	AGCT	1 cut(s)	169
AluI	AGCT	1 cut(s)	169
Alw26I	GTCTC	1 cut(s)	28
AlwI	GGATC	2 cut(s)	64, 388
Ama87I	CYCGRG	1 cut(s)	225
AoxI	GGCC	8 cut(s)	41, 156, 222, 369, 538, 756, 762, 783
ApeKI	GCWGC	4 cut(s)	386, 416, 419, 502
ApoI	RAATTY	2 cut(s)	577, 640
ArsI	GACNNNNNNTTYG	2 cut(s)	191, 223
AseI	ATTAAT	1 cut(s)	593
Asp700I	GAANNNNTTC	1 cut(s)	168
AspS9I	GGNCC	5 cut(s)	156, 223, 267, 762, 767
AsuC2I	CCSGG	4 cut(s)	226, 227, 274, 373
AsuHPI	GGTGA	2 cut(s)	337, 679
AvaI	CYCGRG	1 cut(s)	225
AvaII	GGWCC	2 cut(s)	267, 767
BaeGI	GKGCMC	1 cut(s)	525
BalI	TGGCCA	1 cut(s)	758
BanI	GGYRCC	1 cut(s)	520
BbvI	GCAGC	4 cut(s)	398, 403, 406, 489
BccI	CCATC	3 cut(s)	74, 113, 611
BceAI	ACGGC	1 cut(s)	490
BciT130I	CCWGG	3 cut(s)	48, 312, 760
BcnI	CCSGG	4 cut(s)	226, 227, 274, 373
BcoDI	GTCTC	1 cut(s)	28
BfaI	CTAG	2 cut(s)	99, 705
BisI	GCNGC	7 cut(s)	52, 316, 387, 417, 420, 472, 503
BlsI	GCNGC	7 cut(s)	53, 317, 388, 418, 421, 473, 504
Bme1390I	CCNGG	7 cut(s)	48, 226, 227, 274, 312, 373, 760
Bme18I	GGWCC	2 cut(s)	267, 767
BmeRI	GACNNNNNGTC	1 cut(s)	346
BmeT110I	CYCGRG	1 cut(s)	225
BmgT120I	GGNCC	5 cut(s)	156, 223, 267, 762, 767
BmiI	GGNNCC	3 cut(s)	129, 157, 522
BmrFI	CCNGG	7 cut(s)	48, 226, 227, 274, 312, 373, 760
BmsI	GCATC	3 cut(s)	220, 373, 630
BpmI	CTGGAG	3 cut(s)	93, 423, 505
Bpu10I	CCTNAGC	1 cut(s)	542
BpuMI	CCSGG	4 cut(s)	226, 227, 274, 373
BsaHI	GRCGYC	1 cut(s)	444
BsaJI	CCNNGG	4 cut(s)	225, 273, 291, 759
BsaXI	ACNNNNNCTCC	2 cut(s)	69, 99
Bsc4I	CCNNNNNNNGG	5 cut(s)	50, 53, 138, 276, 279
Bse118I	RCCGGY	1 cut(s)	764
Bse1I	ACTGG	2 cut(s)	347, 488
BseBI	CCWGG	3 cut(s)	48, 312, 760
BseDI	CCNNGG	4 cut(s)	225, 273, 291, 759
BseGI	GGATG	3 cut(s)	124, 235, 462
BseLI	CCNNNNNNNGG	5 cut(s)	50, 53, 138, 276, 279
BseMII	CTCAG	3 cut(s)	11, 669, 762
BseNI	ACTGG	2 cut(s)	347, 488
BseRI	GAGGAG	1 cut(s)	90
BseSI	GKGCMC	1 cut(s)	525
BseXI	GCAGC	4 cut(s)	398, 403, 406, 489
BseYI	CCCAGC	3 cut(s)	105, 318, 422
BshFI	GGCC	8 cut(s)	43, 158, 224, 371, 540, 758, 764, 785
BshNI	GGYRCC	1 cut(s)	520
BsiHKCI	CYCGRG	1 cut(s)	225
BsiSI	CCGG	4 cut(s)	226, 273, 372, 765
BslFI	GGGAC	1 cut(s)	353
BslI	CCNNNNNNNGG	5 cut(s)	50, 53, 138, 276, 279
BsmAI	GTCTC	1 cut(s)	28
BsmFI	GGGAC	1 cut(s)	353
BsnI	GGCC	8 cut(s)	43, 158, 224, 371, 540, 758, 764, 785
BsoBI	CYCGRG	1 cut(s)	225
Bsp1286I	GDGCHC	1 cut(s)	525
Bsp143I	GATC	3 cut(s)	56, 393, 491
BspANI	GGCC	8 cut(s)	43, 158, 224, 371, 540, 758, 764, 785
BspCNI	CTCAG	3 cut(s)	12, 670, 763
BspLI	GGNNCC	3 cut(s)	129, 157, 522
BspPI	GGATC	2 cut(s)	64, 388
BspQI	GCTCTTC	1 cut(s)	159
BspT107I	GGYRCC	1 cut(s)	520
BsrBI	CCGCTC	2 cut(s)	260, 407
BsrFI	RCCGGY	1 cut(s)	764
BsrI	ACTGG	2 cut(s)	347, 488
BssAI	RCCGGY	1 cut(s)	764
BssECI	CCNNGG	4 cut(s)	225, 273, 291, 759
BssMI	GATC	3 cut(s)	56, 393, 491
BssNI	GRCGYC	1 cut(s)	444
BssT1I	CCWWGG	1 cut(s)	291
Bst2UI	CCWGG	3 cut(s)	48, 312, 760
Bst4CI	ACNGT	1 cut(s)	39
Bst6I	CTCTTC	1 cut(s)	159
BstACI	GRCGYC	1 cut(s)	444
BstDEI	CTNAG	4 cut(s)	20, 542, 678, 771
BstF5I	GGATG	3 cut(s)	124, 235, 462
BstKTI	GATC	3 cut(s)	59, 396, 494
BstMAI	GTCTC	1 cut(s)	28
BstMBI	GATC	3 cut(s)	56, 393, 491
BstMWI	GCNNNNNNNGC	4 cut(s)	68, 230, 413, 438
BstNI	CCWGG	3 cut(s)	48, 312, 760
BstSCI	CCNGG	7 cut(s)	46, 224, 225, 272, 310, 371, 758
BstSLI	GKGCMC	1 cut(s)	525
BstV1I	GCAGC	4 cut(s)	398, 403, 406, 489
BstX2I	RGATCY	1 cut(s)	56
BstXI	CCANNNNNNTGG	2 cut(s)	318, 532
BstYI	RGATCY	1 cut(s)	56
BsuRI	GGCC	8 cut(s)	43, 158, 224, 371, 540, 758, 764, 785
BtsCI	GGATG	3 cut(s)	124, 235, 462
BtsIMutI	CAGTG	2 cut(s)	159, 389
Cfr10I	RCCGGY	1 cut(s)	764
Cfr13I	GGNCC	5 cut(s)	156, 223, 267, 762, 767
Cfr9I	CCCGGG	1 cut(s)	225
Csp6I	GTAC	1 cut(s)	508
CviAII	CATG	2 cut(s)	526, 754
CviQI	GTAC	1 cut(s)	508
DdeI	CTNAG	4 cut(s)	20, 542, 678, 771
DpnI	GATC	3 cut(s)	58, 395, 493
DpnII	GATC	3 cut(s)	56, 393, 491
DriI	GACNNNNNGTC	1 cut(s)	346
EaeI	YGGCCR	2 cut(s)	369, 756
Eam1104I	CTCTTC	1 cut(s)	159
Eam1105I	GACNNNNNGTC	1 cut(s)	346
EarI	CTCTTC	1 cut(s)	159
EciI	GGCGGA	1 cut(s)	69
Eco130I	CCWWGG	1 cut(s)	291
Eco147I	AGGCCT	1 cut(s)	785
Eco47I	GGWCC	2 cut(s)	267, 767
Eco57I	CTGAAG	1 cut(s)	183
Eco88I	CYCGRG	1 cut(s)	225
EcoRI	GAATTC	1 cut(s)	640
EcoRII	CCWGG	3 cut(s)	46, 310, 758
EcoT14I	CCWWGG	1 cut(s)	291
ErhI	CCWWGG	1 cut(s)	291
FaeI	CATG	2 cut(s)	529, 757
FaiI	YATR	9 cut(s)	352, 527, 598, 612, 632, 694, 696, 736, 755
FaqI	GGGAC	1 cut(s)	353
FatI	CATG	2 cut(s)	525, 753
FauI	CCCGC	4 cut(s)	116, 328, 400, 444
FauNDI	CATATG	1 cut(s)	694
FblI	GTMKAC	1 cut(s)	480
Fnu4HI	GCNGC	7 cut(s)	52, 316, 387, 417, 420, 472, 503
FokI	GGATG	3 cut(s)	131, 242, 469
Fsp4HI	GCNGC	7 cut(s)	52, 316, 387, 417, 420, 472, 503
FspBI	CTAG	2 cut(s)	99, 705
GluI	GCNGC	7 cut(s)	52, 316, 387, 417, 420, 472, 503
GsaI	CCCAGC	3 cut(s)	109, 322, 426
GsuI	CTGGAG	3 cut(s)	93, 423, 505
HaeIII	GGCC	8 cut(s)	43, 158, 224, 371, 540, 758, 764, 785
HapII	CCGG	4 cut(s)	226, 273, 372, 765
Hin1I	GRCGYC	1 cut(s)	444
Hin1II	CATG	2 cut(s)	529, 757
HincII	GTYRAC	1 cut(s)	481
HindII	GTYRAC	1 cut(s)	481
HinfI	GANTC	3 cut(s)	142, 207, 634
HpaII	CCGG	4 cut(s)	226, 273, 372, 765
HphI	GGTGA	2 cut(s)	337, 679
Hpy166II	GTNNAC	2 cut(s)	267, 481
Hpy188I	TCNGA	3 cut(s)	21, 141, 639
Hpy188III	TCNNGA	1 cut(s)	770
Hpy8I	GTNNAC	2 cut(s)	267, 481
Hpy99I	CGWCG	4 cut(s)	138, 141, 255, 446
HpyAV	CCTTC	5 cut(s)	100, 233, 322, 547, 580
HpyCH4III	ACNGT	1 cut(s)	39
HpyCH4IV	ACGT	2 cut(s)	444, 654
HpyCH4V	TGCA	3 cut(s)	62, 386, 692
HpyF10VI	GCNNNNNNNGC	4 cut(s)	68, 230, 413, 438
HpyF3I	CTNAG	4 cut(s)	20, 542, 678, 771
HpySE526I	ACGT	2 cut(s)	444, 654
Hsp92I	GRCGYC	1 cut(s)	444
Hsp92II	CATG	2 cut(s)	529, 757
Kzo9I	GATC	3 cut(s)	56, 393, 491
LguI	GCTCTTC	1 cut(s)	159
LmnI	GCTCC	2 cut(s)	257, 404
Lsp1109I	GCAGC	4 cut(s)	398, 403, 406, 489
LweI	GCATC	3 cut(s)	220, 373, 630
MaeI	CTAG	2 cut(s)	99, 705
MaeII	ACGT	2 cut(s)	444, 654
MaeIII	GTNAC	1 cut(s)	9
MalI	GATC	3 cut(s)	58, 395, 493
MbiI	CCGCTC	2 cut(s)	260, 407
MboI	GATC	3 cut(s)	56, 393, 491
MboII	GAAGA	4 cut(s)	176, 562, 682, 710
MflI	RGATCY	1 cut(s)	56
MhlI	GDGCHC	1 cut(s)	525
MlsI	TGGCCA	1 cut(s)	758
MluCI	AATT	5 cut(s)	64, 150, 577, 640, 727
MluNI	TGGCCA	1 cut(s)	758
MmeI	TCCRAC	1 cut(s)	119
Mox20I	TGGCCA	1 cut(s)	758
MroXI	GAANNNNTTC	1 cut(s)	168
MscI	TGGCCA	1 cut(s)	758
MseI	TTAA	2 cut(s)	147, 593
MslI	CAYNNNNRTG	2 cut(s)	595, 629
Msp20I	TGGCCA	1 cut(s)	758
MspA1I	CMGCKG	1 cut(s)	451
MspI	CCGG	4 cut(s)	226, 273, 372, 765
MspR9I	CCNGG	7 cut(s)	48, 226, 227, 274, 312, 373, 760
MvaI	CCWGG	3 cut(s)	48, 312, 760
MwoI	GCNNNNNNNGC	4 cut(s)	68, 230, 413, 438
NciI	CCSGG	4 cut(s)	226, 227, 274, 373
NdeI	CATATG	1 cut(s)	694
NdeII	GATC	3 cut(s)	56, 393, 491
NlaIII	CATG	2 cut(s)	529, 757
NlaIV	GGNNCC	3 cut(s)	129, 157, 522
PceI	AGGCCT	1 cut(s)	785
PciSI	GCTCTTC	1 cut(s)	159
PdmI	GAANNNNTTC	1 cut(s)	168
PfeI	GAWTC	3 cut(s)	142, 207, 634
PkrI	GCNGC	7 cut(s)	53, 317, 388, 418, 421, 473, 504
PshBI	ATTAAT	1 cut(s)	593
Psp6I	CCWGG	3 cut(s)	46, 310, 758
PspFI	CCCAGC	3 cut(s)	105, 318, 422
PspGI	CCWGG	3 cut(s)	46, 310, 758
PspN4I	GGNNCC	3 cut(s)	129, 157, 522
PspPI	GGNCC	5 cut(s)	156, 223, 267, 762, 767
PsuI	RGATCY	1 cut(s)	56
RsaI	GTAC	1 cut(s)	509
RsaNI	GTAC	1 cut(s)	508
RseI	CAYNNNNRTG	2 cut(s)	595, 629
SalI	GTCGAC	1 cut(s)	479
SapI	GCTCTTC	1 cut(s)	159
SaqAI	TTAA	2 cut(s)	147, 593
SatI	GCNGC	7 cut(s)	52, 316, 387, 417, 420, 472, 503
Sau3AI	GATC	3 cut(s)	56, 393, 491
Sau96I	GGNCC	5 cut(s)	156, 223, 267, 762, 767
ScrFI	CCNGG	7 cut(s)	48, 226, 227, 274, 312, 373, 760
SduI	GDGCHC	1 cut(s)	525
SfaNI	GCATC	3 cut(s)	220, 373, 630
SinI	GGWCC	2 cut(s)	267, 767
SmaI	CCCGGG	1 cut(s)	227
SmiMI	CAYNNNNRTG	2 cut(s)	595, 629
Sse9I	AATT	5 cut(s)	64, 150, 577, 640, 727
SseBI	AGGCCT	1 cut(s)	785
SspMI	CTAG	2 cut(s)	99, 705
StuI	AGGCCT	1 cut(s)	785
StyD4I	CCNGG	7 cut(s)	46, 224, 225, 272, 310, 371, 758
StyI	CCWWGG	1 cut(s)	291
TaaI	ACNGT	1 cut(s)	39
TaiI	ACGT	2 cut(s)	447, 657
TaqI	TCGA	2 cut(s)	480, 644
TasI	AATT	5 cut(s)	64, 150, 577, 640, 727
TauI	GCSGC	3 cut(s)	54, 318, 474
TfiI	GAWTC	3 cut(s)	142, 207, 634
Tru1I	TTAA	2 cut(s)	147, 593
Tru9I	TTAA	2 cut(s)	147, 593
TscAI	CASTG	2 cut(s)	166, 396
TseI	GCWGC	4 cut(s)	386, 416, 419, 502
TspDTI	ATGAA	2 cut(s)	662, 711
TspGWI	ACGGA	1 cut(s)	386
TspMI	CCCGGG	1 cut(s)	225
TspRI	CASTG	2 cut(s)	166, 396
VpaK11BI	GGWCC	2 cut(s)	267, 767
VspI	ATTAAT	1 cut(s)	593
XapI	RAATTY	2 cut(s)	577, 640
XmaI	CCCGGG	1 cut(s)	225
XmiI	GTMKAC	1 cut(s)	480
XmnI	GAANNNNTTC	1 cut(s)	168
XspI	CTAG	2 cut(s)	99, 705
ZraI	GACGTC	1 cut(s)	445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.