RLG00000014921

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0001534
Physical Location & Seq
Forward (+)
59480487 .. 59480954
468 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014921

Sequence Viewer

Length: 441 bp
ATGAACATATTCCAATTGGTTCTTAAAGATATACGAGTTGAATTGCAAAAAATGCTTAGGTTACTCTCTTTGAGAGGTGGGTGGAGGCCATGGCCTCTTGGCGGCGGCTCTGCAAATTGGGCTGGAGGATATGGGATTTCCCTCTCATCTGGTCAACGGGGGATTAAAGGAGGCAGGGCTCCTCATTGTCGGCTTCTCAAAAATTTGATTCATGTTTTCTTGTTCGGAGTCGTGTGCTTTGGCAACAGCGATGGTACTTTTGGGCTGCACACGACAGCGCCAGTGGTCGATGTTCCTAGGCAATCTGGATCGGTGATGGTCCCGGGGTCTCGATGCTTGGTGCTATCTGAGCAAGAAGATCTGGTGGTTGCGGCCGGTCGGGGTGCGGACTGGAGCTTTGGGCGGGGTGTCCAAGTGGTTGGGTGGCCTCATCAATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

15.77

Weight (kDa)

10.18

Isoelectric Point (pI)

34.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 102, 105, 371, 386, 403
AclWI GGATC 1 cut(s) 316
AcoI YGGCCR 1 cut(s) 372
AcsI RAATTY 1 cut(s) 202
AfaI GTAC 1 cut(s) 256
AfiI CCNNNNNNNGG 1 cut(s) 101
AgsI TTSAA 1 cut(s) 41
AluBI AGCT 1 cut(s) 396
AluI AGCT 1 cut(s) 396
Alw26I GTCTC 1 cut(s) 333
AlwI GGATC 1 cut(s) 316
Ama87I CYCGRG 1 cut(s) 322
AoxI GGCC 4 cut(s) 86, 92, 372, 425
ApeKI GCWGC 1 cut(s) 265
ApoI RAATTY 1 cut(s) 202
ArsI GACNNNNNNTTYG 2 cut(s) 380, 412
Asp700I GAANNNNTTC 1 cut(s) 8
AspA2I CCTAGG 1 cut(s) 296
AspLEI GCGC 1 cut(s) 280
AspS9I GGNCC 1 cut(s) 319
AsuC2I CCSGG 2 cut(s) 323, 324
AsuHPI GGTGA 1 cut(s) 325
AvaI CYCGRG 1 cut(s) 322
AvaII GGWCC 1 cut(s) 319
AvrII CCTAGG 1 cut(s) 296
BanII GRGCYC 1 cut(s) 181
BbvI GCAGC 1 cut(s) 252
BccI CCATC 2 cut(s) 245, 310
BcnI CCSGG 2 cut(s) 323, 324
BcoDI GTCTC 1 cut(s) 333
BfaI CTAG 2 cut(s) 297, 439
BfoI RGCGCY 1 cut(s) 281
BglII AGATCT 1 cut(s) 358
BisI GCNGC 4 cut(s) 103, 106, 266, 372
BlnI CCTAGG 1 cut(s) 296
BlsI GCNGC 4 cut(s) 104, 107, 267, 373
Bme1390I CCNGG 2 cut(s) 323, 324
Bme18I GGWCC 1 cut(s) 319
BmeT110I CYCGRG 1 cut(s) 322
BmgT120I GGNCC 1 cut(s) 319
BmiI GGNNCC 2 cut(s) 180, 321
BmrFI CCNGG 2 cut(s) 323, 324
BmsI GCATC 1 cut(s) 323
BpmI CTGGAG 2 cut(s) 144, 412
Bpu10I CCTNAGC 1 cut(s) 56
BpuMI CCSGG 2 cut(s) 323, 324
BsaI GGTCTC 1 cut(s) 333
BsaJI CCNNGG 4 cut(s) 89, 296, 322, 323
Bsc4I CCNNNNNNNGG 1 cut(s) 101
Bse118I RCCGGY 1 cut(s) 374
Bse1I ACTGG 2 cut(s) 281, 395
BseDI CCNNGG 4 cut(s) 89, 296, 322, 323
BseLI CCNNNNNNNGG 1 cut(s) 101
BseMII CTCAG 1 cut(s) 339
BseNI ACTGG 2 cut(s) 281, 395
BseRI GAGGAG 1 cut(s) 171
BseX3I CGGCCG 1 cut(s) 372
BseXI GCAGC 1 cut(s) 252
BsgI GTGCAG 1 cut(s) 251
Bsh1285I CGRYCG 2 cut(s) 375, 379
BshFI GGCC 4 cut(s) 88, 94, 374, 427
BsiEI CGRYCG 2 cut(s) 375, 379
BsiHKCI CYCGRG 1 cut(s) 322
BsiSI CCGG 2 cut(s) 323, 375
BslFI GGGAC 1 cut(s) 305
BslI CCNNNNNNNGG 1 cut(s) 101
BsmAI GTCTC 1 cut(s) 333
BsmFI GGGAC 1 cut(s) 305
BsnI GGCC 4 cut(s) 88, 94, 374, 427
Bso31I GGTCTC 1 cut(s) 333
BsoBI CYCGRG 1 cut(s) 322
Bsp1286I GDGCHC 1 cut(s) 181
Bsp143I GATC 2 cut(s) 308, 358
Bsp19I CCATGG 1 cut(s) 89
BspACI CCGC 5 cut(s) 102, 105, 371, 386, 403
BspANI GGCC 4 cut(s) 88, 94, 374, 427
BspCNI CTCAG 1 cut(s) 340
BspLI GGNNCC 2 cut(s) 180, 321
BspPI GGATC 1 cut(s) 316
BspTNI GGTCTC 1 cut(s) 333
BsrFI RCCGGY 1 cut(s) 374
BsrI ACTGG 2 cut(s) 281, 395
BssAI RCCGGY 1 cut(s) 374
BssECI CCNNGG 4 cut(s) 89, 296, 322, 323
BssMI GATC 2 cut(s) 308, 358
BssT1I CCWWGG 2 cut(s) 89, 296
BstAPI GCANNNNNTGC 1 cut(s) 52
BstDEI CTNAG 2 cut(s) 56, 348
BstDSI CCRYGG 1 cut(s) 89
BstH2I RGCGCY 1 cut(s) 281
BstHHI GCGC 1 cut(s) 280
BstKTI GATC 2 cut(s) 311, 361
BstMAI GTCTC 1 cut(s) 333
BstMBI GATC 2 cut(s) 308, 358
BstMCI CGRYCG 2 cut(s) 375, 379
BstMWI GCNNNNNNNGC 3 cut(s) 52, 119, 349
BstSCI CCNGG 2 cut(s) 321, 322
BstV1I GCAGC 1 cut(s) 252
BstX2I RGATCY 1 cut(s) 358
BstXI CCANNNNNNTGG 1 cut(s) 419
BstYI RGATCY 1 cut(s) 358
BstZI CGGCCG 1 cut(s) 372
BsuRI GGCC 4 cut(s) 88, 94, 374, 427
BtgI CCRYGG 1 cut(s) 89
BtgZI GCGATG 1 cut(s) 264
BtsIMutI CAGTG 1 cut(s) 288
CfoI GCGC 1 cut(s) 280
Cfr10I RCCGGY 1 cut(s) 374
Cfr13I GGNCC 1 cut(s) 319
Cfr9I CCCGGG 1 cut(s) 322
Csp6I GTAC 1 cut(s) 255
CviAII CATG 2 cut(s) 90, 212
CviQI GTAC 1 cut(s) 255
DdeI CTNAG 2 cut(s) 56, 348
DpnI GATC 2 cut(s) 310, 360
DpnII GATC 2 cut(s) 308, 358
EaeI YGGCCR 1 cut(s) 372
EagI CGGCCG 1 cut(s) 372
EclXI CGGCCG 1 cut(s) 372
Eco130I CCWWGG 2 cut(s) 89, 296
Eco24I GRGCYC 1 cut(s) 181
Eco31I GGTCTC 1 cut(s) 333
Eco47I GGWCC 1 cut(s) 319
Eco52I CGGCCG 1 cut(s) 372
Eco88I CYCGRG 1 cut(s) 322
EcoT14I CCWWGG 2 cut(s) 89, 296
EcoT38I GRGCYC 1 cut(s) 181
ErhI CCWWGG 2 cut(s) 89, 296
FaeI CATG 2 cut(s) 93, 215
FaiI YATR 5 cut(s) 8, 32, 91, 132, 213
FaqI GGGAC 1 cut(s) 305
FatI CATG 2 cut(s) 89, 211
FauI CCCGC 1 cut(s) 396
Fnu4HI GCNGC 4 cut(s) 103, 106, 266, 372
FriOI GRGCYC 1 cut(s) 181
Fsp4HI GCNGC 4 cut(s) 103, 106, 266, 372
FspBI CTAG 2 cut(s) 297, 439
GlaI GCGC 1 cut(s) 279
GluI GCNGC 4 cut(s) 103, 106, 266, 372
GsuI CTGGAG 2 cut(s) 144, 412
HaeII RGCGCY 1 cut(s) 281
HaeIII GGCC 4 cut(s) 88, 94, 374, 427
HapII CCGG 2 cut(s) 323, 375
HhaI GCGC 1 cut(s) 280
Hin1II CATG 2 cut(s) 93, 215
Hin6I GCGC 1 cut(s) 278
HinP1I GCGC 1 cut(s) 278
HincII GTYRAC 1 cut(s) 155
HindII GTYRAC 1 cut(s) 155
HinfI GANTC 2 cut(s) 208, 228
HpaII CCGG 2 cut(s) 323, 375
HphI GGTGA 1 cut(s) 325
Hpy166II GTNNAC 1 cut(s) 155
Hpy188I TCNGA 2 cut(s) 227, 349
Hpy188III TCNNGA 2 cut(s) 306, 330
Hpy8I GTNNAC 1 cut(s) 155
HpyCH4V TGCA 3 cut(s) 46, 113, 268
HpyF10VI GCNNNNNNNGC 3 cut(s) 52, 119, 349
HpyF3I CTNAG 2 cut(s) 56, 348
Hsp92II CATG 2 cut(s) 93, 215
HspAI GCGC 1 cut(s) 278
Kzo9I GATC 2 cut(s) 308, 358
LmnI GCTCC 2 cut(s) 184, 393
LpnPI CCDG 9 cut(s) 108, 135, 160, 291, 294, 336, 347, 376, 388
Lsp1109I GCAGC 1 cut(s) 252
LweI GCATC 1 cut(s) 323
MaeI CTAG 2 cut(s) 297, 439
MaeIII GTNAC 1 cut(s) 60
MalI GATC 2 cut(s) 310, 360
MboI GATC 2 cut(s) 308, 358
MboII GAAGA 1 cut(s) 368
MfeI CAATTG 1 cut(s) 14
MflI RGATCY 1 cut(s) 358
MhlI GDGCHC 1 cut(s) 181
MluCI AATT 5 cut(s) 14, 41, 115, 202, 434
MlyI GAGTC 1 cut(s) 237
MnlI CCTC 8 cut(s) 68, 78, 105, 119, 152, 164, 192, 438
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 2 cut(s) 24, 165
MspI CCGG 2 cut(s) 323, 375
MspR9I CCNGG 2 cut(s) 323, 324
MunI CAATTG 1 cut(s) 14
MwoI GCNNNNNNNGC 3 cut(s) 52, 119, 349
NciI CCSGG 2 cut(s) 323, 324
NcoI CCATGG 1 cut(s) 89
NdeII GATC 2 cut(s) 308, 358
NlaIII CATG 2 cut(s) 93, 215
NlaIV GGNNCC 2 cut(s) 180, 321
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 1 cut(s) 208
PkrI GCNGC 4 cut(s) 104, 107, 267, 373
PleI GAGTC 1 cut(s) 236
PpsI GAGTC 1 cut(s) 236
PspN4I GGNNCC 2 cut(s) 180, 321
PspPI GGNCC 1 cut(s) 319
PsuI RGATCY 1 cut(s) 358
RsaI GTAC 1 cut(s) 256
RsaNI GTAC 1 cut(s) 255
SaqAI TTAA 2 cut(s) 24, 165
SatI GCNGC 4 cut(s) 103, 106, 266, 372
Sau3AI GATC 2 cut(s) 308, 358
Sau96I GGNCC 1 cut(s) 319
SchI GAGTC 1 cut(s) 237
ScrFI CCNGG 2 cut(s) 323, 324
SduI GDGCHC 1 cut(s) 181
SetI ASST 3 cut(s) 62, 79, 398
SfaNI GCATC 1 cut(s) 323
SinI GGWCC 1 cut(s) 319
SmaI CCCGGG 1 cut(s) 324
Sse9I AATT 5 cut(s) 14, 41, 115, 202, 434
SsiI CCGC 5 cut(s) 102, 105, 371, 386, 403
SspMI CTAG 2 cut(s) 297, 439
StyD4I CCNGG 2 cut(s) 321, 322
StyI CCWWGG 2 cut(s) 89, 296
TaqI TCGA 2 cut(s) 288, 331
TasI AATT 5 cut(s) 14, 41, 115, 202, 434
TauI GCSGC 3 cut(s) 105, 108, 374
TfiI GAWTC 1 cut(s) 208
Tru1I TTAA 2 cut(s) 24, 165
Tru9I TTAA 2 cut(s) 24, 165
TscAI CASTG 1 cut(s) 288
TseI GCWGC 1 cut(s) 265
TspDTI ATGAA 2 cut(s) 17, 200
TspMI CCCGGG 1 cut(s) 322
TspRI CASTG 1 cut(s) 288
VpaK11BI GGWCC 1 cut(s) 319
XapI RAATTY 1 cut(s) 202
XmaI CCCGGG 1 cut(s) 322
XmaJI CCTAGG 1 cut(s) 296
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 2 cut(s) 297, 439
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.