RLG00000017118

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001534
Physical Location & Seq
Reverse (-)
12947633 .. 12950725
3093 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017118

Sequence Viewer

Length: 924 bp
ATGTTTAGGTTACTCTCTCTGAGAGGTGGGTGGAAGCCGTGGCCTCCTCGTGGCGGAGGAGATGGATTTTCCCTCTCATCTGGTCGCCGGGAGATTGAAGGGGACGGAGATTTTCGTTGTCAAAGTCTCAAAATCTTGTTTCTTGTTCTTTTGTTCGGGGTCCGGTGCCTTAGCAGCATCGATGGCGATACTGGGTCATGCATGGCAGCGCCGTTGGGTTGTGCTTCTGGGAAATCTGGATCGGTGACGGTTCTGGGGTCTCGTTGCTTGCCCCTGACTGAGCAGGACGATCTAGTGGCCGGTGGTGGTTGGGTTGCGGCCTGGAGCTACAAGCGGTGGTCTGGGCTTGGATCTCGACTTCTGTTGATGGCGGCCACGGATTGCGACTTCCACCTGGCTTGTGGAGACGATGATCTCATGCTAAAGGGACGGTCTGGTGGTCTTAGGTTGGGGTTGGCTGCGGCTTGGTGCGGTGAAGATTGCAGAAGGCAGCAGGGTCAGATCTTCTCGACCGACGTCGTTGAAGGAAGGCAGACTAGTGGGTGGCAGCTGTTGGATGGGGTGCCCAAGTGGTTGGGTGGCCTCATCAATTCCGTTTGGGTTTCTATTGGGCCTCCATCTACTAGGGTTTCCTGTTTGGGCGCGTCGCAGCTGGTACGGACTGGAAGGAAGTCATCGATAGAAAGTGAGCCGAGAACTCTGGGGTTTCGTCAGATCCAATATGCAAGGGAGGCAGCTGAGTACGTGATGAATACAAAGGATTTAGAAGAAGCAAAGCGCATTTTCACTCAGGGATTACAGCCAGTAGCGAGCGTGATGAAACCAAGTGGAGAGGAGATGATGGATTCGGTTGATGAATTTGAGTATTCAGAAGATCGATACCGATTATCTGAACTAAGGGATGTAGTCACAGCGCCATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

308

Amino Acids

33.42

Weight (kDa)

5.69

Isoelectric Point (pI)

53.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 519
AccB1I GGYRCC 2 cut(s) 165, 562
AccII CGCG 1 cut(s) 644
AciI CCGC 6 cut(s) 54, 317, 334, 371, 461, 471
AclWI GGATC 3 cut(s) 247, 358, 709
AcoI YGGCCR 2 cut(s) 297, 372
AcsI RAATTY 1 cut(s) 857
AcyI GRCGYC 1 cut(s) 516
AfaI GTAC 2 cut(s) 657, 743
AfiI CCNNNNNNNGG 2 cut(s) 50, 53
AgsI TTSAA 2 cut(s) 98, 524
AhlI ACTAGT 1 cut(s) 536
AjnI CCWGG 2 cut(s) 320, 393
AluBI AGCT 4 cut(s) 327, 550, 652, 737
AluI AGCT 4 cut(s) 327, 550, 652, 737
Alw26I GTCTC 3 cut(s) 131, 264, 399
AlwI GGATC 3 cut(s) 247, 358, 709
AoxI GGCC 6 cut(s) 41, 297, 318, 372, 580, 611
ApeKI GCWGC 7 cut(s) 174, 206, 458, 490, 547, 649, 734
ApoI RAATTY 1 cut(s) 857
AspLEI GCGC 4 cut(s) 211, 644, 780, 916
AspS9I GGNCC 2 cut(s) 160, 611
AsuC2I CCSGG 1 cut(s) 89
AsuHPI GGTGA 2 cut(s) 256, 485
AvaII GGWCC 1 cut(s) 160
BaeGI GKGCMC 1 cut(s) 567
BanI GGYRCC 2 cut(s) 165, 562
BauI CACGAG 1 cut(s) 48
BbvI GCAGC 7 cut(s) 186, 218, 445, 502, 559, 661, 746
BccI CCATC 6 cut(s) 56, 176, 361, 551, 625, 835
BceAI ACGGC 2 cut(s) 22, 196
BciT130I CCWGG 2 cut(s) 322, 395
BcnI CCSGG 1 cut(s) 89
BcoDI GTCTC 3 cut(s) 131, 264, 399
BcuI ACTAGT 1 cut(s) 536
BfaI CTAG 3 cut(s) 293, 537, 624
BfoI RGCGCY 2 cut(s) 212, 917
BglII AGATCT 1 cut(s) 501
Bme1390I CCNGG 3 cut(s) 89, 322, 395
Bme18I GGWCC 1 cut(s) 160
BmgT120I GGNCC 2 cut(s) 160, 611
BmiI GGNNCC 3 cut(s) 161, 167, 564
BmrFI CCNGG 3 cut(s) 89, 322, 395
BmrI ACTGGG 1 cut(s) 201
BmsI GCATC 1 cut(s) 186
BmuI ACTGGG 1 cut(s) 201
BoxI GACNNNNGTC 1 cut(s) 515
BpmI CTGGAG 1 cut(s) 343
Bpu10I CCTNAGC 1 cut(s) 170
BpuMI CCSGG 1 cut(s) 89
Bsa29I ATCGAT 3 cut(s) 180, 677, 877
BsaAI YACGTR 1 cut(s) 745
BsaHI GRCGYC 1 cut(s) 516
BsaI GGTCTC 1 cut(s) 264
BsaJI CCNNGG 2 cut(s) 38, 375
BsaWI WCCGGW 1 cut(s) 162
Bsc4I CCNNNNNNNGG 2 cut(s) 50, 53
Bse118I RCCGGY 1 cut(s) 299
Bse1I ACTGG 3 cut(s) 196, 667, 803
BseBI CCWGG 2 cut(s) 322, 395
BseCI ATCGAT 3 cut(s) 180, 677, 877
BseDI CCNNGG 2 cut(s) 38, 375
BseGI GGATG 2 cut(s) 562, 907
BseLI CCNNNNNNNGG 2 cut(s) 50, 53
BseMII CTCAG 4 cut(s) 11, 270, 729, 803
BseNI ACTGG 3 cut(s) 196, 667, 803
BseRI GAGGAG 3 cut(s) 36, 72, 848
BseSI GKGCMC 1 cut(s) 567
BseXI GCAGC 7 cut(s) 186, 218, 445, 502, 559, 661, 746
Bsh1236I CGCG 1 cut(s) 644
Bsh1285I CGRYCG 1 cut(s) 513
BshFI GGCC 6 cut(s) 43, 299, 320, 374, 582, 613
BshNI GGYRCC 2 cut(s) 165, 562
BshVI ATCGAT 3 cut(s) 180, 677, 877
BsiEI CGRYCG 1 cut(s) 513
BsiSI CCGG 3 cut(s) 88, 163, 300
BslFI GGGAC 2 cut(s) 116, 441
BslI CCNNNNNNNGG 2 cut(s) 50, 53
BsmAI GTCTC 3 cut(s) 131, 264, 399
BsmBI CGTCTC 1 cut(s) 399
BsmFI GGGAC 2 cut(s) 116, 441
BsnI GGCC 6 cut(s) 43, 299, 320, 374, 582, 613
Bso31I GGTCTC 1 cut(s) 264
Bsp1286I GDGCHC 1 cut(s) 567
Bsp143I GATC 7 cut(s) 239, 289, 350, 412, 501, 714, 874
BspACI CCGC 6 cut(s) 54, 317, 334, 371, 461, 471
BspANI GGCC 6 cut(s) 43, 299, 320, 374, 582, 613
BspCNI CTCAG 4 cut(s) 12, 271, 730, 802
BspDI ATCGAT 3 cut(s) 180, 677, 877
BspFNI CGCG 1 cut(s) 644
BspLI GGNNCC 3 cut(s) 161, 167, 564
BspPI GGATC 3 cut(s) 247, 358, 709
BspT107I GGYRCC 2 cut(s) 165, 562
BspTNI GGTCTC 1 cut(s) 264
BsrFI RCCGGY 1 cut(s) 299
BsrI ACTGG 3 cut(s) 196, 667, 803
BssAI RCCGGY 1 cut(s) 299
BssECI CCNNGG 2 cut(s) 38, 375
BssMI GATC 7 cut(s) 239, 289, 350, 412, 501, 714, 874
BssNI GRCGYC 1 cut(s) 516
BssSI CACGAG 1 cut(s) 48
Bst2BI CACGAG 1 cut(s) 48
Bst2UI CCWGG 2 cut(s) 322, 395
Bst4CI ACNGT 2 cut(s) 250, 432
BstACI GRCGYC 1 cut(s) 516
BstBAI YACGTR 1 cut(s) 745
BstC8I GCNNGC 2 cut(s) 269, 811
BstDEI CTNAG 7 cut(s) 20, 170, 279, 443, 738, 789, 896
BstDSI CCRYGG 2 cut(s) 38, 375
BstF5I GGATG 2 cut(s) 562, 907
BstFNI CGCG 1 cut(s) 644
BstH2I RGCGCY 2 cut(s) 212, 917
BstHHI GCGC 4 cut(s) 211, 644, 780, 916
BstKTI GATC 7 cut(s) 242, 292, 353, 415, 504, 717, 877
BstMAI GTCTC 3 cut(s) 131, 264, 399
BstMBI GATC 7 cut(s) 239, 289, 350, 412, 501, 714, 874
BstMCI CGRYCG 1 cut(s) 513
BstMWI GCNNNNNNNGC 3 cut(s) 174, 183, 731
BstNI CCWGG 2 cut(s) 322, 395
BstPAI GACNNNNGTC 1 cut(s) 515
BstSCI CCNGG 3 cut(s) 87, 320, 393
BstSLI GKGCMC 1 cut(s) 567
BstUI CGCG 1 cut(s) 644
BstV1I GCAGC 7 cut(s) 186, 218, 445, 502, 559, 661, 746
BstX2I RGATCY 3 cut(s) 350, 501, 714
BstXI CCANNNNNNTGG 1 cut(s) 574
BstYI RGATCY 3 cut(s) 350, 501, 714
Bsu15I ATCGAT 3 cut(s) 180, 677, 877
BsuRI GGCC 6 cut(s) 43, 299, 320, 374, 582, 613
BsuTUI ATCGAT 3 cut(s) 180, 677, 877
BtgI CCRYGG 2 cut(s) 38, 375
BtsCI GGATG 2 cut(s) 562, 907
Cac8I GCNNGC 2 cut(s) 269, 811
CfoI GCGC 4 cut(s) 211, 644, 780, 916
Cfr10I RCCGGY 1 cut(s) 299
Cfr13I GGNCC 2 cut(s) 160, 611
ClaI ATCGAT 3 cut(s) 180, 677, 877
CseI GACGC 1 cut(s) 633
Csp6I GTAC 2 cut(s) 656, 742
CspCI CAANNNNNGTGG 2 cut(s) 380, 415
CviAII CATG 3 cut(s) 198, 202, 418
CviQI GTAC 2 cut(s) 656, 742
DdeI CTNAG 7 cut(s) 20, 170, 279, 443, 738, 789, 896
DpnI GATC 7 cut(s) 241, 291, 352, 414, 503, 716, 876
DpnII GATC 7 cut(s) 239, 289, 350, 412, 501, 714, 874
EaeI YGGCCR 2 cut(s) 297, 372
EciI GGCGGA 1 cut(s) 69
Eco31I GGTCTC 1 cut(s) 264
Eco47I GGWCC 1 cut(s) 160
EcoRII CCWGG 2 cut(s) 320, 393
EcoT22I ATGCAT 1 cut(s) 203
Esp3I CGTCTC 1 cut(s) 399
FaeI CATG 3 cut(s) 201, 205, 421
FaiI YATR 4 cut(s) 199, 203, 419, 723
FaqI GGGAC 2 cut(s) 116, 441
FatI CATG 3 cut(s) 197, 201, 417
FokI GGATG 2 cut(s) 569, 914
FspBI CTAG 3 cut(s) 293, 537, 624
GlaI GCGC 4 cut(s) 210, 643, 779, 915
GsuI CTGGAG 1 cut(s) 343
HaeII RGCGCY 2 cut(s) 212, 917
HaeIII GGCC 6 cut(s) 43, 299, 320, 374, 582, 613
HapII CCGG 3 cut(s) 88, 163, 300
HgaI GACGC 1 cut(s) 633
HhaI GCGC 4 cut(s) 211, 644, 780, 916
Hin1I GRCGYC 1 cut(s) 516
Hin1II CATG 3 cut(s) 201, 205, 421
Hin6I GCGC 4 cut(s) 209, 642, 778, 914
HinP1I GCGC 4 cut(s) 209, 642, 778, 914
HinfI GANTC 1 cut(s) 845
HpaII CCGG 3 cut(s) 88, 163, 300
HphI GGTGA 2 cut(s) 256, 485
Hpy188I TCNGA 5 cut(s) 21, 501, 714, 871, 892
Hpy188III TCNNGA 3 cut(s) 237, 354, 508
Hpy99I CGWCG 3 cut(s) 518, 521, 649
HpyAV CCTTC 5 cut(s) 92, 480, 518, 522, 660
HpyCH4III ACNGT 2 cut(s) 250, 432
HpyCH4IV ACGT 2 cut(s) 516, 744
HpyCH4V TGCA 3 cut(s) 201, 483, 725
HpyF10VI GCNNNNNNNGC 3 cut(s) 174, 183, 731
HpyF3I CTNAG 7 cut(s) 20, 170, 279, 443, 738, 789, 896
HpySE526I ACGT 2 cut(s) 516, 744
Hsp92I GRCGYC 1 cut(s) 516
Hsp92II CATG 3 cut(s) 201, 205, 421
HspAI GCGC 4 cut(s) 209, 642, 778, 914
Kzo9I GATC 7 cut(s) 239, 289, 350, 412, 501, 714, 874
LmnI GCTCC 1 cut(s) 324
Lsp1109I GCAGC 7 cut(s) 186, 218, 445, 502, 559, 661, 746
LweI GCATC 1 cut(s) 186
MaeI CTAG 3 cut(s) 293, 537, 624
MaeII ACGT 2 cut(s) 516, 744
MaeIII GTNAC 3 cut(s) 9, 244, 907
MalI GATC 7 cut(s) 241, 291, 352, 414, 503, 716, 876
MboI GATC 7 cut(s) 239, 289, 350, 412, 501, 714, 874
MboII GAAGA 4 cut(s) 488, 496, 779, 884
MflI RGATCY 3 cut(s) 350, 501, 714
MhlI GDGCHC 1 cut(s) 567
MluCI AATT 2 cut(s) 589, 857
MmeI TCCRAC 1 cut(s) 534
MnlI CCTC 9 cut(s) 17, 50, 54, 57, 83, 593, 624, 724, 826
Mph1103I ATGCAT 1 cut(s) 203
MspA1I CMGCKG 3 cut(s) 550, 652, 737
MspI CCGG 3 cut(s) 88, 163, 300
MspR9I CCNGG 3 cut(s) 89, 322, 395
MvaI CCWGG 2 cut(s) 322, 395
MvnI CGCG 1 cut(s) 644
MwoI GCNNNNNNNGC 3 cut(s) 174, 183, 731
NciI CCSGG 1 cut(s) 89
NdeII GATC 7 cut(s) 239, 289, 350, 412, 501, 714, 874
NlaIII CATG 3 cut(s) 201, 205, 421
NlaIV GGNNCC 3 cut(s) 161, 167, 564
NmeAIII GCCGAG 1 cut(s) 717
NmuCI GTSAC 2 cut(s) 244, 907
NsiI ATGCAT 1 cut(s) 203
PfeI GAWTC 1 cut(s) 845
Ppu21I YACGTR 1 cut(s) 745
PshAI GACNNNNGTC 1 cut(s) 515
Psp6I CCWGG 2 cut(s) 320, 393
PspGI CCWGG 2 cut(s) 320, 393
PspN4I GGNNCC 3 cut(s) 161, 167, 564
PspPI GGNCC 2 cut(s) 160, 611
PsuI RGATCY 3 cut(s) 350, 501, 714
PvuII CAGCTG 3 cut(s) 550, 652, 737
RsaI GTAC 2 cut(s) 657, 743
RsaNI GTAC 2 cut(s) 656, 742
Sau3AI GATC 7 cut(s) 239, 289, 350, 412, 501, 714, 874
Sau96I GGNCC 2 cut(s) 160, 611
ScrFI CCNGG 3 cut(s) 89, 322, 395
SduI GDGCHC 1 cut(s) 567
SfaNI GCATC 1 cut(s) 186
SinI GGWCC 1 cut(s) 160
SpeI ACTAGT 1 cut(s) 536
Sse9I AATT 2 cut(s) 589, 857
SsiI CCGC 6 cut(s) 54, 317, 334, 371, 461, 471
SspMI CTAG 3 cut(s) 293, 537, 624
StyD4I CCNGG 3 cut(s) 87, 320, 393
TaaI ACNGT 2 cut(s) 250, 432
TaiI ACGT 2 cut(s) 519, 747
TaqI TCGA 5 cut(s) 180, 355, 509, 677, 877
TaqII GACCGA 1 cut(s) 527
TasI AATT 2 cut(s) 589, 857
TauI GCSGC 3 cut(s) 320, 374, 464
TfiI GAWTC 1 cut(s) 845
TseFI GTSAC 2 cut(s) 244, 907
TseI GCWGC 7 cut(s) 174, 206, 458, 490, 547, 649, 734
Tsp45I GTSAC 2 cut(s) 244, 907
TspDTI ATGAA 3 cut(s) 764, 833, 870
TspGWI ACGGA 4 cut(s) 120, 392, 583, 673
VpaK11BI GGWCC 1 cut(s) 160
XapI RAATTY 1 cut(s) 857
XcmI CCANNNNNNNNNTGG 1 cut(s) 398
XspI CTAG 3 cut(s) 293, 537, 624
ZraI GACGTC 1 cut(s) 517
Zsp2I ATGCAT 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.