Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001534

Physical Location & Seq

Genomic Coordinates Forward (+)

25789746 .. 25792865

Gene Structure 3120 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018139

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGTTTTGTTTACTCTCAAAGAGAGGTAGGTGGAGGTCGTGGCCTCCTAGTGGCGGATCTGCTAATTGGGCTGGAGGAGAGGGTTTTGCCTTCTCAGCTGGTCGATGGGAGACTGACGACAGCGAGATTCTTCGTCGTCGGCTGCTTGAAACTAGAGACAATGGTAAGTATGGGTCACGGGCTCAGGGTCGTGACAATGGAGGTTGGATCAAGGATGACGGGACCGGGATGACGTGGCGGTCCGTTGCCAAATGCAAGGTTACTGCCAGATATCGACTGGATTGCCGCTTGAAAATGGTTGTAGCGGCCTGTTGGATTTGCCCTGAGTGGGGAGCGGGTCTGGTTCAGTCTATGTCGGTAGCGAGGTGGTCGTCACCGACGGTGGAGATGTCCTTTCGCTGCTTCAGACGATTCAAGTTTTGCACCGCATGCTCGCCGCAGATTGGAGCGGGTTGTGGCTTGGGTTCAAACTGTGCCTATGGCTGGCTCTTCACTGGTCTTCAAAGCTCATGGCTCCACTCCTGTGCCTCCAACACAGTCCAGGGTGGTGTTCGATGGTCTTCCCGTGGCTACATCGAGGACTCACAAGTCTATGACTATCATGGAGCTCGATTCACCTATTGCTCTTGCAGTGGTTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

214

Amino Acids

23.73

Weight (kDa)

9.24

Isoelectric Point (pI)

70.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001534)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33467 AT4G33467
fragaria_vesca	FvH4_1g13550
malus_domestica	MD02G1150700.v1.1 MD15G1265300.v1.1
prunus_persica	Prupe.7G152300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0101941 RchiOBHm_Chr7g0231621
rosa_laevigata	RLG00000003218 RLG00000003459 RLG00000005525 RLG00000005735 RLG00000008080 RLG00000009250 RLG00000012890 RLG00000014921 RLG00000016044 RLG00000017118 RLG00000017262 RLG00000018139 RLG00000018892 RLG00000019095 RLG00000020815 RLG00000023064 RLG00000024324 RLG00000024611 RLG00000024901 RLG00000025131 RLG00000026573 RLG00000028471 RLG00000029991 RLG00000030471 RLG00000033464 RLG00000033615
rosa_multiflora	Rmu_sc0000697.1_g000010 Rmu_sc0004767.1_g000002 Rmu_sc0012270.1_g000006
rosa_roxburghii	Rroxscaffold_2G00132820 Rroxscaffold_2G00140910 Rroxscaffold_3G00223440 Rroxscaffold_3G00265480 Rroxscaffold_5G00344290
rosa_rugosa	Rorug02G0103200 Rorug05G0210700 Rorug06G0152900
rosa_samantha	Rh2AG151300 Rh2BG156800 Rh2CG156600 Rh2DG156900 Rh6AG272100
rosa_wichuraiana	Rw2G011810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	238, 587
AccBSI	CCGCTC	2 cut(s)	335, 449
AciI	CCGC	8 cut(s)	54, 238, 286, 305, 335, 426, 437, 449
AclWI	GGATC	2 cut(s)	64, 215
AcuI	CTGAAG	1 cut(s)	388
AfiI	CCNNNNNNNGG	6 cut(s)	50, 53, 328, 329, 443, 483
AgsI	TTSAA	5 cut(s)	149, 292, 415, 468, 503
AjiI	CACGTC	1 cut(s)	234
AjnI	CCWGG	1 cut(s)	540
AleI	CACNNNNGTG	1 cut(s)	522
AluBI	AGCT	3 cut(s)	98, 507, 608
AluI	AGCT	3 cut(s)	98, 507, 608
Alw21I	GWGCWC	1 cut(s)	610
Alw26I	GTCTC	2 cut(s)	104, 150
AlwI	GGATC	2 cut(s)	64, 215
AoxI	GGCC	2 cut(s)	41, 306
ApeKI	GCWGC	2 cut(s)	142, 399
AspS9I	GGNCC	2 cut(s)	222, 240
AsuC2I	CCSGG	1 cut(s)	226
AsuHPI	GGTGA	2 cut(s)	366, 607
AvaII	GGWCC	2 cut(s)	222, 240
BanII	GRGCYC	2 cut(s)	184, 610
BbsI	GAAGAC	2 cut(s)	491, 552
Bbv12I	GWGCWC	1 cut(s)	610
BbvI	GCAGC	2 cut(s)	129, 386
BccI	CCATC	2 cut(s)	99, 549
BcgI	CGANNNNNNTGC	2 cut(s)	264, 298
BciT130I	CCWGG	1 cut(s)	542
BcnI	CCSGG	1 cut(s)	226
BcoDI	GTCTC	2 cut(s)	104, 150
BfaI	CTAG	2 cut(s)	48, 153
BisI	GCNGC	5 cut(s)	143, 286, 306, 400, 437
BlsI	GCNGC	5 cut(s)	144, 287, 307, 401, 438
Bme1390I	CCNGG	2 cut(s)	226, 542
Bme18I	GGWCC	2 cut(s)	222, 240
BmgBI	CACGTC	1 cut(s)	234
BmgT120I	GGNCC	2 cut(s)	222, 240
BmiI	GGNNCC	2 cut(s)	223, 515
BmrFI	CCNGG	2 cut(s)	226, 542
BpiI	GAAGAC	2 cut(s)	491, 552
BpmI	CTGGAG	1 cut(s)	93
Bpu10I	CCTNAGC	1 cut(s)	183
BpuMI	CCSGG	1 cut(s)	226
BsaJI	CCNNGG	2 cut(s)	541, 565
Bsc4I	CCNNNNNNNGG	6 cut(s)	50, 53, 328, 329, 443, 483
Bse1I	ACTGG	2 cut(s)	282, 499
BseBI	CCWGG	1 cut(s)	542
BseDI	CCNNGG	2 cut(s)	541, 565
BseGI	GGATG	2 cut(s)	220, 234
BseLI	CCNNNNNNNGG	6 cut(s)	50, 53, 328, 329, 443, 483
BseMII	CTCAG	3 cut(s)	108, 197, 315
BseNI	ACTGG	2 cut(s)	282, 499
BseRI	GAGGAG	1 cut(s)	90
BseXI	GCAGC	2 cut(s)	129, 386
BshFI	GGCC	2 cut(s)	43, 308
BsiHKAI	GWGCWC	1 cut(s)	610
BsiSI	CCGG	1 cut(s)	225
BslFI	GGGAC	1 cut(s)	235
BslI	CCNNNNNNNGG	6 cut(s)	50, 53, 328, 329, 443, 483
BsmAI	GTCTC	2 cut(s)	104, 150
BsmFI	GGGAC	1 cut(s)	235
BsnI	GGCC	2 cut(s)	43, 308
Bsp1286I	GDGCHC	2 cut(s)	184, 610
Bsp143I	GATC	2 cut(s)	56, 207
BspACI	CCGC	8 cut(s)	54, 238, 286, 305, 335, 426, 437, 449
BspANI	GGCC	2 cut(s)	43, 308
BspCNI	CTCAG	3 cut(s)	107, 196, 316
BspLI	GGNNCC	2 cut(s)	223, 515
BspPI	GGATC	2 cut(s)	64, 215
BspQI	GCTCTTC	1 cut(s)	494
BsrBI	CCGCTC	2 cut(s)	335, 449
BsrI	ACTGG	2 cut(s)	282, 499
BssECI	CCNNGG	2 cut(s)	541, 565
BssMI	GATC	2 cut(s)	56, 207
Bst2UI	CCWGG	1 cut(s)	542
Bst4CI	ACNGT	3 cut(s)	382, 473, 538
Bst6I	CTCTTC	1 cut(s)	494
BstAPI	GCANNNNNTGC	1 cut(s)	429
BstC8I	GCNNGC	3 cut(s)	430, 434, 485
BstDEI	CTNAG	3 cut(s)	94, 183, 324
BstDSI	CCRYGG	1 cut(s)	565
BstF5I	GGATG	2 cut(s)	220, 234
BstKTI	GATC	2 cut(s)	59, 210
BstMAI	GTCTC	2 cut(s)	104, 150
BstMBI	GATC	2 cut(s)	56, 207
BstMWI	GCNNNNNNNGC	3 cut(s)	68, 95, 429
BstNI	CCWGG	1 cut(s)	542
BstNSI	RCATGY	1 cut(s)	432
BstSCI	CCNGG	2 cut(s)	224, 540
BstV1I	GCAGC	2 cut(s)	129, 386
BstV2I	GAAGAC	2 cut(s)	491, 552
BstX2I	RGATCY	1 cut(s)	56
BstYI	RGATCY	1 cut(s)	56
BsuRI	GGCC	2 cut(s)	43, 308
BtgI	CCRYGG	1 cut(s)	565
BtrI	CACGTC	1 cut(s)	234
BtsCI	GGATG	2 cut(s)	220, 234
BtsI	GCAGTG	1 cut(s)	637
BtsIMutI	CAGTG	2 cut(s)	492, 637
Cac8I	GCNNGC	3 cut(s)	430, 434, 485
Cfr13I	GGNCC	2 cut(s)	222, 240
CpoI	CGGWCCG	1 cut(s)	240
CspI	CGGWCCG	1 cut(s)	240
CviAII	CATG	3 cut(s)	429, 510, 602
DdeI	CTNAG	3 cut(s)	94, 183, 324
DpnI	GATC	2 cut(s)	58, 209
DpnII	GATC	2 cut(s)	56, 207
DrdI	GACNNNNNNGTC	2 cut(s)	238, 587
DseDI	GACNNNNNNGTC	2 cut(s)	238, 587
Eam1104I	CTCTTC	1 cut(s)	494
EarI	CTCTTC	1 cut(s)	494
EciI	GGCGGA	1 cut(s)	69
Ecl136II	GAGCTC	1 cut(s)	608
Eco24I	GRGCYC	2 cut(s)	184, 610
Eco32I	GATATC	1 cut(s)	272
Eco47I	GGWCC	2 cut(s)	222, 240
Eco53kI	GAGCTC	1 cut(s)	608
Eco57I	CTGAAG	1 cut(s)	388
EcoICRI	GAGCTC	1 cut(s)	608
EcoRII	CCWGG	1 cut(s)	540
EcoRV	GATATC	1 cut(s)	272
EcoT38I	GRGCYC	2 cut(s)	184, 610
FaeI	CATG	3 cut(s)	432, 513, 605
FaiI	YATR	7 cut(s)	171, 353, 430, 480, 511, 594, 603
FaqI	GGGAC	1 cut(s)	235
FatI	CATG	3 cut(s)	428, 509, 601
FauI	CCCGC	2 cut(s)	328, 442
Fnu4HI	GCNGC	5 cut(s)	143, 286, 306, 400, 437
FokI	GGATG	2 cut(s)	227, 241
FriOI	GRGCYC	2 cut(s)	184, 610
Fsp4HI	GCNGC	5 cut(s)	143, 286, 306, 400, 437
FspBI	CTAG	2 cut(s)	48, 153
GluI	GCNGC	5 cut(s)	143, 286, 306, 400, 437
GsuI	CTGGAG	1 cut(s)	93
HaeIII	GGCC	2 cut(s)	43, 308
HapII	CCGG	1 cut(s)	225
Hin1II	CATG	3 cut(s)	432, 513, 605
HinfI	GANTC	4 cut(s)	127, 411, 581, 612
HpaII	CCGG	1 cut(s)	225
HphI	GGTGA	2 cut(s)	366, 607
Hpy166II	GTNNAC	1 cut(s)	11
Hpy188I	TCNGA	1 cut(s)	407
Hpy188III	TCNNGA	1 cut(s)	191
Hpy8I	GTNNAC	1 cut(s)	11
Hpy99I	CGWCG	3 cut(s)	138, 141, 382
HpyAV	CCTTC	1 cut(s)	100
HpyCH4III	ACNGT	3 cut(s)	382, 473, 538
HpyCH4IV	ACGT	1 cut(s)	233
HpyCH4V	TGCA	3 cut(s)	255, 423, 630
HpyF10VI	GCNNNNNNNGC	3 cut(s)	68, 95, 429
HpyF3I	CTNAG	3 cut(s)	94, 183, 324
HpySE526I	ACGT	1 cut(s)	233
Hsp92II	CATG	3 cut(s)	432, 513, 605
Kzo9I	GATC	2 cut(s)	56, 207
LguI	GCTCTTC	1 cut(s)	494
LmnI	GCTCC	4 cut(s)	332, 446, 519, 605
Lsp1109I	GCAGC	2 cut(s)	129, 386
MaeI	CTAG	2 cut(s)	48, 153
MaeII	ACGT	1 cut(s)	233
MaeIII	GTNAC	4 cut(s)	174, 191, 259, 372
MalI	GATC	2 cut(s)	58, 209
MbiI	CCGCTC	2 cut(s)	335, 449
MboI	GATC	2 cut(s)	56, 207
MboII	GAAGA	4 cut(s)	122, 481, 491, 552
MflI	RGATCY	1 cut(s)	56
MhlI	GDGCHC	2 cut(s)	184, 610
MluCI	AATT	1 cut(s)	64
MlyI	GAGTC	1 cut(s)	575
MmeI	TCCRAC	3 cut(s)	185, 293, 555
MnlI	CCTC	9 cut(s)	17, 27, 54, 68, 73, 194, 357, 538, 571
MslI	CAYNNNNRTG	1 cut(s)	522
MspA1I	CMGCKG	1 cut(s)	98
MspI	CCGG	1 cut(s)	225
MspR9I	CCNGG	2 cut(s)	226, 542
MvaI	CCWGG	1 cut(s)	542
MwoI	GCNNNNNNNGC	3 cut(s)	68, 95, 429
NciI	CCSGG	1 cut(s)	226
NdeII	GATC	2 cut(s)	56, 207
NlaIII	CATG	3 cut(s)	432, 513, 605
NlaIV	GGNNCC	2 cut(s)	223, 515
NmuCI	GTSAC	3 cut(s)	174, 191, 372
NspI	RCATGY	1 cut(s)	432
OliI	CACNNNNGTG	1 cut(s)	522
PaeI	GCATGC	1 cut(s)	432
PciSI	GCTCTTC	1 cut(s)	494
PfeI	GAWTC	3 cut(s)	127, 411, 612
PkrI	GCNGC	5 cut(s)	144, 287, 307, 401, 438
PleI	GAGTC	1 cut(s)	575
PpsI	GAGTC	1 cut(s)	575
Psp124BI	GAGCTC	1 cut(s)	610
Psp6I	CCWGG	1 cut(s)	540
PspGI	CCWGG	1 cut(s)	540
PspN4I	GGNNCC	2 cut(s)	223, 515
PspPI	GGNCC	2 cut(s)	222, 240
PsuI	RGATCY	1 cut(s)	56
PvuII	CAGCTG	1 cut(s)	98
RseI	CAYNNNNRTG	1 cut(s)	522
Rsr2I	CGGWCCG	1 cut(s)	240
RsrII	CGGWCCG	1 cut(s)	240
SacI	GAGCTC	1 cut(s)	610
SapI	GCTCTTC	1 cut(s)	494
SatI	GCNGC	5 cut(s)	143, 286, 306, 400, 437
Sau3AI	GATC	2 cut(s)	56, 207
Sau96I	GGNCC	2 cut(s)	222, 240
SchI	GAGTC	1 cut(s)	575
ScrFI	CCNGG	2 cut(s)	226, 542
SduI	GDGCHC	2 cut(s)	184, 610
SinI	GGWCC	2 cut(s)	222, 240
SmiMI	CAYNNNNRTG	1 cut(s)	522
SphI	GCATGC	1 cut(s)	432
Sse9I	AATT	1 cut(s)	64
SsiI	CCGC	8 cut(s)	54, 238, 286, 305, 335, 426, 437, 449
SspMI	CTAG	2 cut(s)	48, 153
SstI	GAGCTC	1 cut(s)	610
StyD4I	CCNGG	2 cut(s)	224, 540
TaaI	ACNGT	3 cut(s)	382, 473, 538
TaiI	ACGT	1 cut(s)	236
TaqI	TCGA	5 cut(s)	103, 274, 553, 576, 610
TasI	AATT	1 cut(s)	64
TauI	GCSGC	3 cut(s)	288, 308, 439
TfiI	GAWTC	3 cut(s)	127, 411, 612
TscAI	CASTG	2 cut(s)	499, 637
TseFI	GTSAC	3 cut(s)	174, 191, 372
TseI	GCWGC	2 cut(s)	142, 399
Tsp45I	GTSAC	3 cut(s)	174, 191, 372
TspGWI	ACGGA	1 cut(s)	232
TspRI	CASTG	2 cut(s)	499, 637
VpaK11BI	GGWCC	2 cut(s)	222, 240
XceI	RCATGY	1 cut(s)	432
XcmI	CCANNNNNNNNNTGG	1 cut(s)	274
XspI	CTAG	2 cut(s)	48, 153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.