Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001534

Physical Location & Seq

Genomic Coordinates Reverse (-)

34593690 .. 34594162

Gene Structure 473 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024324

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGTGGCAGATCTGCAAATTGGGGTAGAGGAGATGGGATTTCCCTCTCGTCTAGCCGCTAGGAGATTGAGGGTTGCGAGAATCCCCGTAGTCAGCTTCTCAAAATTGGGGGCGGTGGTGTGCCTGCGTTGCGGGGATTTTCTCGTGGCGGATATGATGGATCCGGGTCACTCTGGATCGAGGTTGGTTGGACGGGAACGGAACCAGTGCCTGTGGAGCGCCGGGCAGCGATCTTCTTCAGGTGTTCATGCTTTGCCGGGTGGCTGGGGGCTGTCGGCAGATGGTGACATTGATGTTGATGGCAGTGTCGGGCTAGCAGTGGAGCCACCAATCGGTGCCAGAGTGGCACTAGCTGCAGTTGGGAGCGACGAAGATGGCGGTGGCCAGTGGTGGAAGACTTCCTCAGCCGGCGTCGTCGAACGGAGGTGGACTGGTACTCCGTCGTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

150

Amino Acids

15.55

Weight (kDa)

6.08

Isoelectric Point (pI)

47.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001534)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33467 AT4G33467
fragaria_vesca	FvH4_1g13550
malus_domestica	MD02G1150700.v1.1 MD15G1265300.v1.1
prunus_persica	Prupe.7G152300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0101941 RchiOBHm_Chr7g0231621
rosa_laevigata	RLG00000003218 RLG00000003459 RLG00000005525 RLG00000005735 RLG00000008080 RLG00000009250 RLG00000012890 RLG00000014921 RLG00000016044 RLG00000017118 RLG00000017262 RLG00000018139 RLG00000018892 RLG00000019095 RLG00000020815 RLG00000023064 RLG00000024324 RLG00000024611 RLG00000024901 RLG00000025131 RLG00000026573 RLG00000028471 RLG00000029991 RLG00000030471 RLG00000033464 RLG00000033615
rosa_multiflora	Rmu_sc0000697.1_g000010 Rmu_sc0004767.1_g000002 Rmu_sc0012270.1_g000006
rosa_roxburghii	Rroxscaffold_2G00132820 Rroxscaffold_2G00140910 Rroxscaffold_3G00223440 Rroxscaffold_3G00265480 Rroxscaffold_5G00344290
rosa_rugosa	Rorug02G0103200 Rorug05G0210700 Rorug06G0152900
rosa_samantha	Rh2AG151300 Rh2BG156800 Rh2CG156600 Rh2DG156900 Rh6AG272100
rosa_wichuraiana	Rw2G011810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	335
AciI	CCGC	5 cut(s)	57, 113, 132, 149, 378
AclWI	GGATC	3 cut(s)	155, 168, 184
AcoI	YGGCCR	1 cut(s)	382
AcuI	CTGAAG	1 cut(s)	222
AcyI	GRCGYC	1 cut(s)	411
AfaI	GTAC	1 cut(s)	436
AfiI	CCNNNNNNNGG	1 cut(s)	332
AluBI	AGCT	2 cut(s)	96, 353
AluI	AGCT	2 cut(s)	96, 353
AlwI	GGATC	3 cut(s)	155, 168, 184
AlwNI	CAGNNNCTG	1 cut(s)	211
AoxI	GGCC	1 cut(s)	382
ApeKI	GCWGC	2 cut(s)	226, 353
AspLEI	GCGC	1 cut(s)	221
AsuC2I	CCSGG	3 cut(s)	165, 223, 258
AsuHPI	GGTGA	1 cut(s)	296
AsuNHI	GCTAGC	1 cut(s)	313
BalI	TGGCCA	1 cut(s)	384
BamHI	GGATCC	1 cut(s)	160
BanI	GGYRCC	1 cut(s)	335
BauI	CACGAG	1 cut(s)	143
BbsI	GAAGAC	1 cut(s)	401
BbvCI	CCTCAGC	1 cut(s)	403
BbvI	GCAGC	2 cut(s)	238, 340
BccI	CCATC	5 cut(s)	28, 151, 275, 293, 368
BcnI	CCSGG	3 cut(s)	165, 223, 258
BfaI	CTAG	5 cut(s)	53, 60, 314, 350, 448
BfmI	CTRYAG	1 cut(s)	354
BfoI	RGCGCY	1 cut(s)	222
BglI	GCCNNNNNGGC	1 cut(s)	344
BglII	AGATCT	1 cut(s)	10
BisI	GCNGC	3 cut(s)	57, 227, 354
BlsI	GCNGC	3 cut(s)	58, 228, 355
Bme1390I	CCNGG	3 cut(s)	165, 223, 258
BmiI	GGNNCC	4 cut(s)	162, 203, 324, 337
BmrFI	CCNGG	3 cut(s)	165, 223, 258
BmtI	GCTAGC	1 cut(s)	317
BpiI	GAAGAC	1 cut(s)	401
Bpu10I	CCTNAGC	1 cut(s)	403
BpuMI	CCSGG	3 cut(s)	165, 223, 258
BsaHI	GRCGYC	1 cut(s)	411
BsaXI	ACNNNNNCTCC	1 cut(s)	421
Bsc4I	CCNNNNNNNGG	1 cut(s)	332
Bse118I	RCCGGY	1 cut(s)	407
Bse1I	ACTGG	3 cut(s)	205, 385, 436
BseLI	CCNNNNNNNGG	1 cut(s)	332
BseMII	CTCAG	1 cut(s)	417
BseNI	ACTGG	3 cut(s)	205, 385, 436
BseRI	GAGGAG	1 cut(s)	44
BseXI	GCAGC	2 cut(s)	238, 340
BseYI	CCCAGC	1 cut(s)	264
BshFI	GGCC	1 cut(s)	384
BshNI	GGYRCC	1 cut(s)	335
BsiSI	CCGG	4 cut(s)	164, 222, 257, 408
BslI	CCNNNNNNNGG	1 cut(s)	332
BsnI	GGCC	1 cut(s)	384
Bsp143I	GATC	4 cut(s)	10, 160, 176, 230
BspACI	CCGC	5 cut(s)	57, 113, 132, 149, 378
BspANI	GGCC	1 cut(s)	384
BspCNI	CTCAG	1 cut(s)	416
BspLI	GGNNCC	4 cut(s)	162, 203, 324, 337
BspMAI	CTGCAG	1 cut(s)	358
BspOI	GCTAGC	1 cut(s)	317
BspPI	GGATC	3 cut(s)	155, 168, 184
BspT107I	GGYRCC	1 cut(s)	335
BsrFI	RCCGGY	1 cut(s)	407
BsrI	ACTGG	3 cut(s)	205, 385, 436
BssAI	RCCGGY	1 cut(s)	407
BssMI	GATC	4 cut(s)	10, 160, 176, 230
BssNI	GRCGYC	1 cut(s)	411
BssSI	CACGAG	1 cut(s)	143
Bst2BI	CACGAG	1 cut(s)	143
BstACI	GRCGYC	1 cut(s)	411
BstAPI	GCANNNNNTGC	1 cut(s)	353
BstC8I	GCNNGC	3 cut(s)	125, 315, 409
BstDEI	CTNAG	1 cut(s)	403
BstH2I	RGCGCY	1 cut(s)	222
BstHHI	GCGC	1 cut(s)	221
BstKTI	GATC	4 cut(s)	13, 163, 179, 233
BstMBI	GATC	4 cut(s)	10, 160, 176, 230
BstMWI	GCNNNNNNNGC	4 cut(s)	129, 216, 344, 353
BstSCI	CCNGG	3 cut(s)	163, 221, 256
BstSFI	CTRYAG	1 cut(s)	354
BstV1I	GCAGC	2 cut(s)	238, 340
BstV2I	GAAGAC	1 cut(s)	401
BstX2I	RGATCY	2 cut(s)	10, 160
BstYI	RGATCY	2 cut(s)	10, 160
BsuRI	GGCC	1 cut(s)	384
BtsI	GCAGTG	2 cut(s)	310, 324
BtsIMutI	CAGTG	4 cut(s)	212, 310, 324, 392
Cac8I	GCNNGC	3 cut(s)	125, 315, 409
CaiI	CAGNNNCTG	1 cut(s)	211
CfoI	GCGC	1 cut(s)	221
Cfr10I	RCCGGY	1 cut(s)	407
CseI	GACGC	1 cut(s)	400
Csp6I	GTAC	1 cut(s)	435
CviAII	CATG	1 cut(s)	248
CviJI	RGCY	9 cut(s)	56, 96, 264, 271, 313, 325, 353, 384, 407
CviKI_1	RGCY	9 cut(s)	56, 96, 264, 271, 313, 325, 353, 384, 407
CviQI	GTAC	1 cut(s)	435
DdeI	CTNAG	1 cut(s)	403
DpnI	GATC	4 cut(s)	12, 162, 178, 232
DpnII	GATC	4 cut(s)	10, 160, 176, 230
EaeI	YGGCCR	1 cut(s)	382
EciI	GGCGGA	1 cut(s)	164
Eco57I	CTGAAG	1 cut(s)	222
FaeI	CATG	1 cut(s)	251
FaiI	YATR	2 cut(s)	155, 249
FatI	CATG	1 cut(s)	247
FauI	CCCGC	1 cut(s)	125
Fnu4HI	GCNGC	3 cut(s)	57, 227, 354
Fsp4HI	GCNGC	3 cut(s)	57, 227, 354
FspBI	CTAG	5 cut(s)	53, 60, 314, 350, 448
GlaI	GCGC	1 cut(s)	220
GluI	GCNGC	3 cut(s)	57, 227, 354
GsaI	CCCAGC	1 cut(s)	268
HaeII	RGCGCY	1 cut(s)	222
HaeIII	GGCC	1 cut(s)	384
HapII	CCGG	4 cut(s)	164, 222, 257, 408
HgaI	GACGC	1 cut(s)	400
HhaI	GCGC	1 cut(s)	221
Hin1I	GRCGYC	1 cut(s)	411
Hin1II	CATG	1 cut(s)	251
Hin6I	GCGC	1 cut(s)	219
HinP1I	GCGC	1 cut(s)	219
HinfI	GANTC	1 cut(s)	81
HpaII	CCGG	4 cut(s)	164, 222, 257, 408
HphI	GGTGA	1 cut(s)	296
Hpy166II	GTNNAC	1 cut(s)	429
Hpy188III	TCNNGA	1 cut(s)	174
Hpy8I	GTNNAC	1 cut(s)	429
Hpy99I	CGWCG	4 cut(s)	371, 416, 419, 445
HpyCH4V	TGCA	2 cut(s)	16, 356
HpyF10VI	GCNNNNNNNGC	4 cut(s)	129, 216, 344, 353
HpyF3I	CTNAG	1 cut(s)	403
Hsp92I	GRCGYC	1 cut(s)	411
Hsp92II	CATG	1 cut(s)	251
HspAI	GCGC	1 cut(s)	219
KroI	GCCGGC	1 cut(s)	407
KroNI	GCCGGC	1 cut(s)	409
Kzo9I	GATC	4 cut(s)	10, 160, 176, 230
LmnI	GCTCC	3 cut(s)	216, 322, 363
Lsp1109I	GCAGC	2 cut(s)	238, 340
MaeI	CTAG	5 cut(s)	53, 60, 314, 350, 448
MaeIII	GTNAC	2 cut(s)	167, 284
MalI	GATC	4 cut(s)	12, 162, 178, 232
MboI	GATC	4 cut(s)	10, 160, 176, 230
MboII	GAAGA	4 cut(s)	225, 228, 383, 406
MflI	RGATCY	2 cut(s)	10, 160
MlsI	TGGCCA	1 cut(s)	384
MluCI	AATT	2 cut(s)	18, 104
MluNI	TGGCCA	1 cut(s)	384
MmeI	TCCRAC	1 cut(s)	169
MnlI	CCTC	6 cut(s)	22, 55, 63, 174, 412, 417
Mox20I	TGGCCA	1 cut(s)	384
MroNI	GCCGGC	1 cut(s)	407
MscI	TGGCCA	1 cut(s)	384
Msp20I	TGGCCA	1 cut(s)	384
MspI	CCGG	4 cut(s)	164, 222, 257, 408
MspR9I	CCNGG	3 cut(s)	165, 223, 258
MwoI	GCNNNNNNNGC	4 cut(s)	129, 216, 344, 353
NaeI	GCCGGC	1 cut(s)	409
NciI	CCSGG	3 cut(s)	165, 223, 258
NdeII	GATC	4 cut(s)	10, 160, 176, 230
NgoMIV	GCCGGC	1 cut(s)	407
NheI	GCTAGC	1 cut(s)	313
NlaIII	CATG	1 cut(s)	251
NlaIV	GGNNCC	4 cut(s)	162, 203, 324, 337
NmuCI	GTSAC	2 cut(s)	167, 284
PdiI	GCCGGC	1 cut(s)	409
PfeI	GAWTC	1 cut(s)	81
PkrI	GCNGC	3 cut(s)	58, 228, 355
PspFI	CCCAGC	1 cut(s)	264
PspN4I	GGNNCC	4 cut(s)	162, 203, 324, 337
PstI	CTGCAG	1 cut(s)	358
PstNI	CAGNNNCTG	1 cut(s)	211
PsuI	RGATCY	2 cut(s)	10, 160
RsaI	GTAC	1 cut(s)	436
RsaNI	GTAC	1 cut(s)	435
SatI	GCNGC	3 cut(s)	57, 227, 354
Sau3AI	GATC	4 cut(s)	10, 160, 176, 230
ScrFI	CCNGG	3 cut(s)	165, 223, 258
SetI	ASST	5 cut(s)	98, 185, 244, 355, 428
SfcI	CTRYAG	1 cut(s)	354
Sse9I	AATT	2 cut(s)	18, 104
SsiI	CCGC	5 cut(s)	57, 113, 132, 149, 378
SspMI	CTAG	5 cut(s)	53, 60, 314, 350, 448
StyD4I	CCNGG	3 cut(s)	163, 221, 256
TaqI	TCGA	2 cut(s)	179, 417
TasI	AATT	2 cut(s)	18, 104
TauI	GCSGC	1 cut(s)	59
TfiI	GAWTC	1 cut(s)	81
TscAI	CASTG	4 cut(s)	212, 310, 324, 392
TseFI	GTSAC	2 cut(s)	167, 284
TseI	GCWGC	2 cut(s)	226, 353
Tsp45I	GTSAC	2 cut(s)	167, 284
TspDTI	ATGAA	1 cut(s)	236
TspGWI	ACGGA	3 cut(s)	214, 429, 436
TspRI	CASTG	4 cut(s)	212, 310, 324, 392
XspI	CTAG	5 cut(s)	53, 60, 314, 350, 448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.