Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001534

Physical Location & Seq

Genomic Coordinates Reverse (-)

52815554 .. 52816278

Gene Structure 725 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029991

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGCTTAGGTTACTCTCTCTGAGAGGTGGGTGGAGACCATGGTCTTATGGTGGCGGCTCTGCAAATTGGGCTGGAGGAGGTGGAATGTCCCTCTCATCTGGTCGCTGGGAGATTAAGGGCTGCGGGGTTCCTCGTAGTCGGCATCTTAAATTTAGGGGTGGTGGTGAGCCTGTGTTGCGAGGAGTTTCTCGCGGCGGATATGAGGGATCTGGGATGGGTCCGGTGATTGATGCTGGTTGCGAGGTCGCGCAGTGGAGCACTGGGTGGAGATCCTCCTCGTGTGTTCGTGCTGTGCTGAGTGGCTGGGAGCTGTCAGCGACTAGTGACATAGATGATGATTACAGTGCTGGGCTAGCAATGGCTCTACCGATCTGTGCTGGAGTAAAGTTGGATGCTGTTGGGAGCGGCGACGATGGTGATGGGGGGTGGTGGAAGTCTTCCTTAGCCGGCACCGTCGAATGGAGGTGGACTTGTACTCCGCCTTGCTGGGTTTGGGTGTCCATGGGTTTGGGTGGCCTCAGCAAGTCAAGTTGGGCTTTGAACCTTTCTGGGCCTAGTGCTAGGGTTTCCCTTTCTCTTGGGCCTCTGTCTGGCATATGGAGTAGTTGGGCTGCTGGGCTAGTTTATTTTAATTTTAATTACTTTTATGTAAGAATTCATTCTCCTATGGAGAATGAACTCGTAGCTTCTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

232

Amino Acids

24.49

Weight (kDa)

8.24

Isoelectric Point (pI)

41.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001534)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33467 AT4G33467
fragaria_vesca	FvH4_1g13550
malus_domestica	MD02G1150700.v1.1 MD15G1265300.v1.1
prunus_persica	Prupe.7G152300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0101941 RchiOBHm_Chr7g0231621
rosa_laevigata	RLG00000003218 RLG00000003459 RLG00000005525 RLG00000005735 RLG00000008080 RLG00000009250 RLG00000012890 RLG00000014921 RLG00000016044 RLG00000017118 RLG00000017262 RLG00000018139 RLG00000018892 RLG00000019095 RLG00000020815 RLG00000023064 RLG00000024324 RLG00000024611 RLG00000024901 RLG00000025131 RLG00000026573 RLG00000028471 RLG00000029991 RLG00000030471 RLG00000033464 RLG00000033615
rosa_multiflora	Rmu_sc0000697.1_g000010 Rmu_sc0004767.1_g000002 Rmu_sc0012270.1_g000006
rosa_roxburghii	Rroxscaffold_2G00132820 Rroxscaffold_2G00140910 Rroxscaffold_3G00223440 Rroxscaffold_3G00265480 Rroxscaffold_5G00344290
rosa_rugosa	Rorug02G0103200 Rorug05G0210700 Rorug06G0152900
rosa_samantha	Rh2AG151300 Rh2BG156800 Rh2CG156600 Rh2DG156900 Rh6AG272100
rosa_wichuraiana	Rw2G011810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	449
AccBSI	CCGCTC	1 cut(s)	405
AccII	CGCG	2 cut(s)	192, 248
AciI	CCGC	6 cut(s)	54, 123, 192, 195, 405, 479
AclWI	GGATC	2 cut(s)	214, 264
AcsI	RAATTY	2 cut(s)	149, 654
AdeI	CACNNNGTG	1 cut(s)	264
AfaI	GTAC	1 cut(s)	475
AfiI	CCNNNNNNNGG	2 cut(s)	459, 590
AgsI	TTSAA	1 cut(s)	541
AhlI	ACTAGT	1 cut(s)	320
AluBI	AGCT	2 cut(s)	310, 686
AluI	AGCT	2 cut(s)	310, 686
Alw21I	GWGCWC	1 cut(s)	260
Alw26I	GTCTC	1 cut(s)	28
AlwI	GGATC	2 cut(s)	214, 264
AoxI	GGCC	3 cut(s)	514, 551, 581
ApeKI	GCWGC	2 cut(s)	120, 611
ApoI	RAATTY	2 cut(s)	149, 654
Asp700I	GAANNNNTTC	1 cut(s)	658
AspLEI	GCGC	1 cut(s)	250
AspS9I	GGNCC	3 cut(s)	218, 551, 581
AsuHPI	GGTGA	3 cut(s)	176, 235, 428
AsuNHI	GCTAGC	1 cut(s)	352
AvaII	GGWCC	1 cut(s)	218
BanI	GGYRCC	1 cut(s)	449
BauI	CACGAG	1 cut(s)	277
BbsI	GAAGAC	1 cut(s)	429
Bbv12I	GWGCWC	1 cut(s)	260
BbvCI	CCTCAGC	1 cut(s)	518
BbvI	GCAGC	2 cut(s)	107, 598
BccI	CCATC	3 cut(s)	208, 407, 413
BcoDI	GTCTC	1 cut(s)	28
BcuI	ACTAGT	1 cut(s)	320
BfaI	CTAG	5 cut(s)	321, 353, 555, 561, 620
BisI	GCNGC	5 cut(s)	55, 121, 193, 406, 612
BlsI	GCNGC	5 cut(s)	56, 122, 194, 407, 613
Bme18I	GGWCC	1 cut(s)	218
BmgT120I	GGNCC	3 cut(s)	218, 551, 581
BmiI	GGNNCC	3 cut(s)	129, 219, 451
BmrI	ACTGGG	1 cut(s)	270
BmsI	GCATC	3 cut(s)	151, 220, 382
BmtI	GCTAGC	1 cut(s)	356
BmuI	ACTGGG	1 cut(s)	270
BoxI	GACNNNNGTC	1 cut(s)	40
BpiI	GAAGAC	1 cut(s)	429
BpmI	CTGGAG	2 cut(s)	93, 399
Bpu10I	CCTNAGC	3 cut(s)	5, 442, 518
BsaI	GGTCTC	1 cut(s)	28
BsaJI	CCNNGG	2 cut(s)	38, 501
BsaWI	WCCGGW	1 cut(s)	220
BsaXI	ACNNNNNCTCC	2 cut(s)	460, 490
Bsc4I	CCNNNNNNNGG	2 cut(s)	459, 590
Bse118I	RCCGGY	1 cut(s)	446
Bse1I	ACTGG	1 cut(s)	265
Bse3DI	GCAATG	1 cut(s)	363
BseDI	CCNNGG	2 cut(s)	38, 501
BseGI	GGATG	2 cut(s)	219, 397
BseLI	CCNNNNNNNGG	2 cut(s)	459, 590
BseMI	GCAATG	1 cut(s)	363
BseMII	CTCAG	3 cut(s)	11, 287, 532
BseNI	ACTGG	1 cut(s)	265
BseRI	GAGGAG	3 cut(s)	90, 195, 265
BseXI	GCAGC	2 cut(s)	107, 598
BseYI	CCCAGC	5 cut(s)	105, 303, 347, 486, 614
Bsh1236I	CGCG	2 cut(s)	192, 248
BshFI	GGCC	3 cut(s)	516, 553, 583
BshNI	GGYRCC	1 cut(s)	449
BsiHKAI	GWGCWC	1 cut(s)	260
BsiSI	CCGG	2 cut(s)	221, 447
BslFI	GGGAC	1 cut(s)	73
BslI	CCNNNNNNNGG	2 cut(s)	459, 590
BsmAI	GTCTC	1 cut(s)	28
BsmFI	GGGAC	1 cut(s)	73
BsnI	GGCC	3 cut(s)	516, 553, 583
Bso31I	GGTCTC	1 cut(s)	28
Bsp1286I	GDGCHC	1 cut(s)	260
Bsp143I	GATC	3 cut(s)	206, 269, 369
Bsp19I	CCATGG	2 cut(s)	38, 501
BspACI	CCGC	6 cut(s)	54, 123, 192, 195, 405, 479
BspANI	GGCC	3 cut(s)	516, 553, 583
BspCNI	CTCAG	3 cut(s)	12, 288, 531
BspFNI	CGCG	2 cut(s)	192, 248
BspLI	GGNNCC	3 cut(s)	129, 219, 451
BspOI	GCTAGC	1 cut(s)	356
BspPI	GGATC	2 cut(s)	214, 264
BspT107I	GGYRCC	1 cut(s)	449
BspTNI	GGTCTC	1 cut(s)	28
BsrBI	CCGCTC	1 cut(s)	405
BsrDI	GCAATG	1 cut(s)	363
BsrFI	RCCGGY	1 cut(s)	446
BsrI	ACTGG	1 cut(s)	265
BssAI	RCCGGY	1 cut(s)	446
BssECI	CCNNGG	2 cut(s)	38, 501
BssMI	GATC	3 cut(s)	206, 269, 369
BssSI	CACGAG	1 cut(s)	277
BssT1I	CCWWGG	2 cut(s)	38, 501
Bst2BI	CACGAG	1 cut(s)	277
Bst4CI	ACNGT	2 cut(s)	344, 454
BstC8I	GCNNGC	2 cut(s)	354, 448
BstDEI	CTNAG	5 cut(s)	5, 20, 296, 442, 518
BstDSI	CCRYGG	2 cut(s)	38, 501
BstF5I	GGATG	2 cut(s)	219, 397
BstFNI	CGCG	2 cut(s)	192, 248
BstHHI	GCGC	1 cut(s)	250
BstKTI	GATC	3 cut(s)	209, 272, 372
BstMAI	GTCTC	1 cut(s)	28
BstMBI	GATC	3 cut(s)	206, 269, 369
BstMWI	GCNNNNNNNGC	3 cut(s)	68, 175, 353
BstPAI	GACNNNNGTC	1 cut(s)	40
BstUI	CGCG	2 cut(s)	192, 248
BstV1I	GCAGC	2 cut(s)	107, 598
BstV2I	GAAGAC	1 cut(s)	429
BstX2I	RGATCY	2 cut(s)	206, 269
BstXI	CCANNNNNNTGG	1 cut(s)	508
BstYI	RGATCY	2 cut(s)	206, 269
BsuRI	GGCC	3 cut(s)	516, 553, 583
BtgI	CCRYGG	2 cut(s)	38, 501
BtsCI	GGATG	2 cut(s)	219, 397
BtsI	GCAGTG	1 cut(s)	257
BtsIMutI	CAGTG	3 cut(s)	257, 258, 349
Cac8I	GCNNGC	2 cut(s)	354, 448
CfoI	GCGC	1 cut(s)	250
Cfr10I	RCCGGY	1 cut(s)	446
Cfr13I	GGNCC	3 cut(s)	218, 551, 581
Csp6I	GTAC	1 cut(s)	474
CviAII	CATG	2 cut(s)	39, 502
CviQI	GTAC	1 cut(s)	474
DdeI	CTNAG	5 cut(s)	5, 20, 296, 442, 518
DpnI	GATC	3 cut(s)	208, 271, 371
DpnII	GATC	3 cut(s)	206, 269, 369
DraIII	CACNNNGTG	1 cut(s)	264
EciI	GGCGGA	2 cut(s)	210, 468
Eco130I	CCWWGG	2 cut(s)	38, 501
Eco31I	GGTCTC	1 cut(s)	28
Eco47I	GGWCC	1 cut(s)	218
EcoRI	GAATTC	1 cut(s)	654
EcoT14I	CCWWGG	2 cut(s)	38, 501
ErhI	CCWWGG	2 cut(s)	38, 501
FaeI	CATG	2 cut(s)	42, 505
FaiI	YATR	9 cut(s)	40, 48, 201, 329, 503, 596, 598, 648, 668
FalI	AAGNNNNNCTT	4 cut(s)	425, 457, 520, 552
FaqI	GGGAC	1 cut(s)	73
FatI	CATG	2 cut(s)	38, 501
FauI	CCCGC	1 cut(s)	116
FauNDI	CATATG	1 cut(s)	596
Fnu4HI	GCNGC	5 cut(s)	55, 121, 193, 406, 612
FokI	GGATG	2 cut(s)	226, 404
Fsp4HI	GCNGC	5 cut(s)	55, 121, 193, 406, 612
FspBI	CTAG	5 cut(s)	321, 353, 555, 561, 620
GlaI	GCGC	1 cut(s)	249
GluI	GCNGC	5 cut(s)	55, 121, 193, 406, 612
GsaI	CCCAGC	5 cut(s)	109, 307, 351, 490, 618
GsuI	CTGGAG	2 cut(s)	93, 399
HaeIII	GGCC	3 cut(s)	516, 553, 583
HapII	CCGG	2 cut(s)	221, 447
HhaI	GCGC	1 cut(s)	250
Hin1II	CATG	2 cut(s)	42, 505
Hin6I	GCGC	1 cut(s)	248
HinP1I	GCGC	1 cut(s)	248
HpaII	CCGG	2 cut(s)	221, 447
HphI	GGTGA	3 cut(s)	176, 235, 428
Hpy166II	GTNNAC	1 cut(s)	468
Hpy188I	TCNGA	2 cut(s)	21, 695
Hpy8I	GTNNAC	1 cut(s)	468
Hpy99I	CGWCG	2 cut(s)	413, 458
HpyCH4III	ACNGT	2 cut(s)	344, 454
HpyCH4V	TGCA	1 cut(s)	62
HpyF10VI	GCNNNNNNNGC	3 cut(s)	68, 175, 353
HpyF3I	CTNAG	5 cut(s)	5, 20, 296, 442, 518
Hsp92II	CATG	2 cut(s)	42, 505
HspAI	GCGC	1 cut(s)	248
KroI	GCCGGC	1 cut(s)	446
KroNI	GCCGGC	1 cut(s)	448
Kzo9I	GATC	3 cut(s)	206, 269, 369
LmnI	GCTCC	3 cut(s)	255, 307, 402
Lsp1109I	GCAGC	2 cut(s)	107, 598
LweI	GCATC	3 cut(s)	151, 220, 382
MaeI	CTAG	5 cut(s)	321, 353, 555, 561, 620
MaeIII	GTNAC	2 cut(s)	9, 323
MalI	GATC	3 cut(s)	208, 271, 371
MbiI	CCGCTC	1 cut(s)	405
MboI	GATC	3 cut(s)	206, 269, 369
MboII	GAAGA	1 cut(s)	429
MflI	RGATCY	2 cut(s)	206, 269
MhlI	GDGCHC	1 cut(s)	260
MluCI	AATT	5 cut(s)	64, 149, 631, 637, 654
MmeI	TCCRAC	1 cut(s)	369
MroNI	GCCGGC	1 cut(s)	446
MroXI	GAANNNNTTC	1 cut(s)	658
MseI	TTAA	4 cut(s)	114, 147, 630, 636
MspI	CCGG	2 cut(s)	221, 447
MvnI	CGCG	2 cut(s)	192, 248
MwoI	GCNNNNNNNGC	3 cut(s)	68, 175, 353
NaeI	GCCGGC	1 cut(s)	448
NcoI	CCATGG	2 cut(s)	38, 501
NdeI	CATATG	1 cut(s)	596
NdeII	GATC	3 cut(s)	206, 269, 369
NgoMIV	GCCGGC	1 cut(s)	446
NheI	GCTAGC	1 cut(s)	352
NlaIII	CATG	2 cut(s)	42, 505
NlaIV	GGNNCC	3 cut(s)	129, 219, 451
NmuCI	GTSAC	1 cut(s)	323
PdiI	GCCGGC	1 cut(s)	448
PdmI	GAANNNNTTC	1 cut(s)	658
PkrI	GCNGC	5 cut(s)	56, 122, 194, 407, 613
PshAI	GACNNNNGTC	1 cut(s)	40
PspFI	CCCAGC	5 cut(s)	105, 303, 347, 486, 614
PspN4I	GGNNCC	3 cut(s)	129, 219, 451
PspPI	GGNCC	3 cut(s)	218, 551, 581
PsuI	RGATCY	2 cut(s)	206, 269
RsaI	GTAC	1 cut(s)	475
RsaNI	GTAC	1 cut(s)	474
SaqAI	TTAA	4 cut(s)	114, 147, 630, 636
SatI	GCNGC	5 cut(s)	55, 121, 193, 406, 612
Sau3AI	GATC	3 cut(s)	206, 269, 369
Sau96I	GGNCC	3 cut(s)	218, 551, 581
SduI	GDGCHC	1 cut(s)	260
SetI	ASST	8 cut(s)	11, 28, 82, 246, 312, 467, 546, 688
SfaNI	GCATC	3 cut(s)	151, 220, 382
SinI	GGWCC	1 cut(s)	218
SpeI	ACTAGT	1 cut(s)	320
Sse9I	AATT	5 cut(s)	64, 149, 631, 637, 654
SsiI	CCGC	6 cut(s)	54, 123, 192, 195, 405, 479
SspMI	CTAG	5 cut(s)	321, 353, 555, 561, 620
StyI	CCWWGG	2 cut(s)	38, 501
TaaI	ACNGT	2 cut(s)	344, 454
TaqI	TCGA	1 cut(s)	456
TasI	AATT	5 cut(s)	64, 149, 631, 637, 654
TatI	WGTACW	1 cut(s)	473
TauI	GCSGC	3 cut(s)	57, 195, 408
Tru1I	TTAA	4 cut(s)	114, 147, 630, 636
Tru9I	TTAA	4 cut(s)	114, 147, 630, 636
TscAI	CASTG	3 cut(s)	257, 265, 349
TseFI	GTSAC	1 cut(s)	323
TseI	GCWGC	2 cut(s)	120, 611
Tsp45I	GTSAC	1 cut(s)	323
TspDTI	ATGAA	2 cut(s)	647, 690
TspRI	CASTG	3 cut(s)	257, 265, 349
VpaK11BI	GGWCC	1 cut(s)	218
XapI	RAATTY	2 cut(s)	149, 654
XmnI	GAANNNNTTC	1 cut(s)	658
XspI	CTAG	5 cut(s)	321, 353, 555, 561, 620

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.