RLG00000033464

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0001534
Physical Location & Seq
Forward (+)
27627165 .. 27627935
771 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033464

Sequence Viewer

Length: 660 bp
ATGTTTAGGTTACTCTATCTTAGAGGTAGGTGGAGGCCGTGGCCTCCTGGCTGCGGCTCTGCAAATTGGGTCGGAGGAGATGGGTTTTCCCTCTCATCTGGTCGCCGGGAGATTGAAGGCGACAAGATTTTTCGTTGTCGGAGTCTCAAAATCTTGTTTCTTGTTCTTTTGTTTGGGGTCTGGTGCCTTGGCAGCAGCGATGGCAATCCTGGGTCATGCAAGGCTGCGATGTTGGGCTGTGTTCCTAGGCAACCTGGATCGGTGAAGTTTCTGGGGTCTCGTTGCTTGCCCCTGACTGAGCAGGATGATTTGGTGGCCGGTGGTGGCCGGGTTGCGGACTGGAGTTCTGAGCGGTGGTTTGGGGTTGGACCTCGACTGCTGTTGATGGCGACCATGGATTGTGACTTCAACCTGGCTTGCGGCGATGCTGATCTCTTGCTTAAGGGACGATATGGTGTTCTTGGGTTGGGGTTGTGTTCATGCTTTGTCGGGTGGCTGGGGGCTGTGGCGGATGGGGACATTGACGATGATGGCGGTGTCGGGCTAGCAATGGCGCCACCGATTTGTACCAGAGTGGAGCTGGCTACAATTGGGAGCGACGAAGATGGCGGTAGGCGATGGTGGAAGACTGCCTCAGCCGGCGTCGTCAAACGGAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

220

Amino Acids

23.51

Weight (kDa)

8.31

Isoelectric Point (pI)

53.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 183, 553
AccBSI CCGCTC 1 cut(s) 352
AciI CCGC 7 cut(s) 54, 335, 352, 420, 509, 534, 609
AclWI GGATC 1 cut(s) 265
AcoI YGGCCR 2 cut(s) 315, 325
AcyI GRCGYC 2 cut(s) 554, 642
AfaI GTAC 1 cut(s) 568
AfiI CCNNNNNNNGG 2 cut(s) 53, 334
AflII CTTAAG 1 cut(s) 440
AgsI TTSAA 2 cut(s) 116, 409
AjnI CCWGG 4 cut(s) 46, 208, 253, 411
AluBI AGCT 1 cut(s) 580
AluI AGCT 1 cut(s) 580
Alw26I GTCTC 2 cut(s) 149, 282
AlwI GGATC 1 cut(s) 265
AoxI GGCC 4 cut(s) 35, 41, 315, 325
ApeKI GCWGC 4 cut(s) 51, 192, 195, 224
AspA2I CCTAGG 1 cut(s) 245
AspLEI GCGC 1 cut(s) 556
AspS9I GGNCC 1 cut(s) 368
AsuC2I CCSGG 2 cut(s) 107, 329
AsuHPI GGTGA 1 cut(s) 274
AsuNHI GCTAGC 1 cut(s) 544
AvaII GGWCC 1 cut(s) 368
AvrII CCTAGG 1 cut(s) 245
BanI GGYRCC 2 cut(s) 183, 553
BbsI GAAGAC 1 cut(s) 632
BbvCI CCTCAGC 1 cut(s) 634
BbvI GCAGC 4 cut(s) 38, 204, 207, 211
BccI CCATC 7 cut(s) 74, 194, 379, 506, 524, 599, 612
BceAI ACGGC 1 cut(s) 22
BciT130I CCWGG 4 cut(s) 48, 210, 255, 413
BcnI CCSGG 2 cut(s) 107, 329
BcoDI GTCTC 2 cut(s) 149, 282
BfaI CTAG 2 cut(s) 246, 545
BfoI RGCGCY 1 cut(s) 557
BfrI CTTAAG 1 cut(s) 440
BisI GCNGC 6 cut(s) 52, 55, 193, 196, 225, 421
BlnI CCTAGG 1 cut(s) 245
BlsI GCNGC 6 cut(s) 53, 56, 194, 197, 226, 422
Bme1390I CCNGG 6 cut(s) 48, 107, 210, 255, 329, 413
Bme18I GGWCC 1 cut(s) 368
BmgT120I GGNCC 1 cut(s) 368
BmiI GGNNCC 2 cut(s) 185, 555
BmrFI CCNGG 6 cut(s) 48, 107, 210, 255, 329, 413
BmsI GCATC 1 cut(s) 415
BmtI GCTAGC 1 cut(s) 548
BpiI GAAGAC 1 cut(s) 632
BpmI CTGGAG 1 cut(s) 361
Bpu10I CCTNAGC 1 cut(s) 634
BpuMI CCSGG 2 cut(s) 107, 329
BsaBI GATNNNNATC 2 cut(s) 204, 429
BsaHI GRCGYC 2 cut(s) 554, 642
BsaI GGTCTC 1 cut(s) 282
BsaJI CCNNGG 5 cut(s) 38, 187, 209, 245, 393
Bsc4I CCNNNNNNNGG 2 cut(s) 53, 334
Bse118I RCCGGY 2 cut(s) 317, 638
Bse1I ACTGG 1 cut(s) 344
Bse3DI GCAATG 1 cut(s) 555
Bse8I GATNNNNATC 2 cut(s) 204, 429
BseBI CCWGG 4 cut(s) 48, 210, 255, 413
BseDI CCNNGG 5 cut(s) 38, 187, 209, 245, 393
BseGI GGATG 2 cut(s) 310, 517
BseJI GATNNNNATC 2 cut(s) 204, 429
BseLI CCNNNNNNNGG 2 cut(s) 53, 334
BseMI GCAATG 1 cut(s) 555
BseMII CTCAG 3 cut(s) 288, 339, 648
BseNI ACTGG 1 cut(s) 344
BseRI GAGGAG 1 cut(s) 90
BseXI GCAGC 4 cut(s) 38, 204, 207, 211
BseYI CCCAGC 1 cut(s) 496
BshFI GGCC 4 cut(s) 37, 43, 317, 327
BshNI GGYRCC 2 cut(s) 183, 553
BsiSI CCGG 4 cut(s) 106, 318, 328, 639
BslFI GGGAC 2 cut(s) 459, 530
BslI CCNNNNNNNGG 2 cut(s) 53, 334
BsmAI GTCTC 2 cut(s) 149, 282
BsmFI GGGAC 2 cut(s) 459, 530
BsnI GGCC 4 cut(s) 37, 43, 317, 327
Bso31I GGTCTC 1 cut(s) 282
Bsp143I GATC 2 cut(s) 257, 430
Bsp19I CCATGG 1 cut(s) 393
BspACI CCGC 7 cut(s) 54, 335, 352, 420, 509, 534, 609
BspANI GGCC 4 cut(s) 37, 43, 317, 327
BspCNI CTCAG 3 cut(s) 289, 340, 647
BspLI GGNNCC 2 cut(s) 185, 555
BspOI GCTAGC 1 cut(s) 548
BspPI GGATC 1 cut(s) 265
BspT107I GGYRCC 2 cut(s) 183, 553
BspTI CTTAAG 1 cut(s) 440
BspTNI GGTCTC 1 cut(s) 282
BsrBI CCGCTC 1 cut(s) 352
BsrDI GCAATG 1 cut(s) 555
BsrFI RCCGGY 2 cut(s) 317, 638
BsrI ACTGG 1 cut(s) 344
BssAI RCCGGY 2 cut(s) 317, 638
BssECI CCNNGG 5 cut(s) 38, 187, 209, 245, 393
BssMI GATC 2 cut(s) 257, 430
BssNI GRCGYC 2 cut(s) 554, 642
BssT1I CCWWGG 3 cut(s) 187, 245, 393
Bst2UI CCWGG 4 cut(s) 48, 210, 255, 413
BstACI GRCGYC 2 cut(s) 554, 642
BstAFI CTTAAG 1 cut(s) 440
BstC8I GCNNGC 5 cut(s) 287, 418, 546, 582, 640
BstDEI CTNAG 4 cut(s) 20, 297, 348, 634
BstDSI CCRYGG 2 cut(s) 38, 393
BstF5I GGATG 2 cut(s) 310, 517
BstH2I RGCGCY 1 cut(s) 557
BstHHI GCGC 1 cut(s) 556
BstKTI GATC 2 cut(s) 260, 433
BstMAI GTCTC 2 cut(s) 149, 282
BstMBI GATC 2 cut(s) 257, 430
BstMWI GCNNNNNNNGC 2 cut(s) 192, 201
BstNI CCWGG 4 cut(s) 48, 210, 255, 413
BstSCI CCNGG 6 cut(s) 46, 105, 208, 253, 327, 411
BstV1I GCAGC 4 cut(s) 38, 204, 207, 211
BstV2I GAAGAC 1 cut(s) 632
BsuRI GGCC 4 cut(s) 37, 43, 317, 327
BtgI CCRYGG 2 cut(s) 38, 393
BtgZI GCGATG 4 cut(s) 213, 242, 438, 631
BtsCI GGATG 2 cut(s) 310, 517
Cac8I GCNNGC 5 cut(s) 287, 418, 546, 582, 640
CfoI GCGC 1 cut(s) 556
Cfr10I RCCGGY 2 cut(s) 317, 638
Cfr13I GGNCC 1 cut(s) 368
CseI GACGC 1 cut(s) 631
Csp6I GTAC 1 cut(s) 567
CviAII CATG 3 cut(s) 216, 394, 480
CviQI GTAC 1 cut(s) 567
DdeI CTNAG 4 cut(s) 20, 297, 348, 634
DinI GGCGCC 1 cut(s) 555
DpnI GATC 2 cut(s) 259, 432
DpnII GATC 2 cut(s) 257, 430
EaeI YGGCCR 2 cut(s) 315, 325
EciI GGCGGA 1 cut(s) 524
Eco130I CCWWGG 3 cut(s) 187, 245, 393
Eco31I GGTCTC 1 cut(s) 282
Eco47I GGWCC 1 cut(s) 368
EcoRII CCWGG 4 cut(s) 46, 208, 253, 411
EcoT14I CCWWGG 3 cut(s) 187, 245, 393
EgeI GGCGCC 1 cut(s) 555
EheI GGCGCC 1 cut(s) 555
ErhI CCWWGG 3 cut(s) 187, 245, 393
FaeI CATG 3 cut(s) 219, 397, 483
FaiI YATR 4 cut(s) 217, 395, 453, 481
FaqI GGGAC 2 cut(s) 459, 530
FatI CATG 3 cut(s) 215, 393, 479
Fnu4HI GCNGC 6 cut(s) 52, 55, 193, 196, 225, 421
FokI GGATG 2 cut(s) 317, 524
Fsp4HI GCNGC 6 cut(s) 52, 55, 193, 196, 225, 421
FspBI CTAG 2 cut(s) 246, 545
GlaI GCGC 1 cut(s) 555
GluI GCNGC 6 cut(s) 52, 55, 193, 196, 225, 421
GsaI CCCAGC 1 cut(s) 500
GsuI CTGGAG 1 cut(s) 361
HaeII RGCGCY 1 cut(s) 557
HaeIII GGCC 4 cut(s) 37, 43, 317, 327
HapII CCGG 4 cut(s) 106, 318, 328, 639
HgaI GACGC 1 cut(s) 631
HhaI GCGC 1 cut(s) 556
Hin1I GRCGYC 2 cut(s) 554, 642
Hin1II CATG 3 cut(s) 219, 397, 483
Hin6I GCGC 1 cut(s) 554
HinP1I GCGC 1 cut(s) 554
HinfI GANTC 1 cut(s) 142
HpaII CCGG 4 cut(s) 106, 318, 328, 639
HphI GGTGA 1 cut(s) 274
Hpy188I TCNGA 3 cut(s) 74, 141, 349
Hpy99I CGWCG 2 cut(s) 602, 647
HpyAV CCTTC 1 cut(s) 110
HpyCH4V TGCA 2 cut(s) 62, 219
HpyF10VI GCNNNNNNNGC 2 cut(s) 192, 201
HpyF3I CTNAG 4 cut(s) 20, 297, 348, 634
Hsp92I GRCGYC 2 cut(s) 554, 642
Hsp92II CATG 3 cut(s) 219, 397, 483
HspAI GCGC 1 cut(s) 554
KasI GGCGCC 1 cut(s) 553
KroI GCCGGC 1 cut(s) 638
KroNI GCCGGC 1 cut(s) 640
Kzo9I GATC 2 cut(s) 257, 430
LmnI GCTCC 2 cut(s) 577, 594
Lsp1109I GCAGC 4 cut(s) 38, 204, 207, 211
LweI GCATC 1 cut(s) 415
MaeI CTAG 2 cut(s) 246, 545
MaeIII GTNAC 2 cut(s) 9, 401
MalI GATC 2 cut(s) 259, 432
MbiI CCGCTC 1 cut(s) 352
MboI GATC 2 cut(s) 257, 430
MboII GAAGA 2 cut(s) 614, 637
MfeI CAATTG 1 cut(s) 588
MluCI AATT 2 cut(s) 64, 588
Mly113I GGCGCC 1 cut(s) 554
MlyI GAGTC 1 cut(s) 151
MmeI TCCRAC 3 cut(s) 52, 119, 346
MnlI CCTC 8 cut(s) 17, 27, 54, 68, 101, 381, 643, 648
MroNI GCCGGC 1 cut(s) 638
MseI TTAA 1 cut(s) 441
MspCI CTTAAG 1 cut(s) 440
MspI CCGG 4 cut(s) 106, 318, 328, 639
MspR9I CCNGG 6 cut(s) 48, 107, 210, 255, 329, 413
MunI CAATTG 1 cut(s) 588
MvaI CCWGG 4 cut(s) 48, 210, 255, 413
MwoI GCNNNNNNNGC 2 cut(s) 192, 201
NaeI GCCGGC 1 cut(s) 640
NarI GGCGCC 1 cut(s) 554
NciI CCSGG 2 cut(s) 107, 329
NcoI CCATGG 1 cut(s) 393
NdeII GATC 2 cut(s) 257, 430
NgoMIV GCCGGC 1 cut(s) 638
NheI GCTAGC 1 cut(s) 544
NlaIII CATG 3 cut(s) 219, 397, 483
NlaIV GGNNCC 2 cut(s) 185, 555
NmuCI GTSAC 1 cut(s) 401
PdiI GCCGGC 1 cut(s) 640
PkrI GCNGC 6 cut(s) 53, 56, 194, 197, 226, 422
PleI GAGTC 1 cut(s) 150
PluTI GGCGCC 1 cut(s) 557
PpsI GAGTC 1 cut(s) 150
Psp6I CCWGG 4 cut(s) 46, 208, 253, 411
PspFI CCCAGC 1 cut(s) 496
PspGI CCWGG 4 cut(s) 46, 208, 253, 411
PspN4I GGNNCC 2 cut(s) 185, 555
PspPI GGNCC 1 cut(s) 368
RsaI GTAC 1 cut(s) 568
RsaNI GTAC 1 cut(s) 567
SaqAI TTAA 1 cut(s) 441
SatI GCNGC 6 cut(s) 52, 55, 193, 196, 225, 421
Sau3AI GATC 2 cut(s) 257, 430
Sau96I GGNCC 1 cut(s) 368
SchI GAGTC 1 cut(s) 151
ScrFI CCNGG 6 cut(s) 48, 107, 210, 255, 329, 413
SetI ASST 8 cut(s) 11, 28, 32, 256, 373, 414, 582, 659
SfaNI GCATC 1 cut(s) 415
SfoI GGCGCC 1 cut(s) 555
SinI GGWCC 1 cut(s) 368
SmlI CTYRAG 1 cut(s) 440
SmoI CTYRAG 1 cut(s) 440
Sse9I AATT 2 cut(s) 64, 588
SsiI CCGC 7 cut(s) 54, 335, 352, 420, 509, 534, 609
SspDI GGCGCC 1 cut(s) 553
SspMI CTAG 2 cut(s) 246, 545
StyD4I CCNGG 6 cut(s) 46, 105, 208, 253, 327, 411
StyI CCWWGG 3 cut(s) 187, 245, 393
TaqI TCGA 1 cut(s) 373
TasI AATT 2 cut(s) 64, 588
TauI GCSGC 2 cut(s) 57, 423
Tru1I TTAA 1 cut(s) 441
Tru9I TTAA 1 cut(s) 441
TseFI GTSAC 1 cut(s) 401
TseI GCWGC 4 cut(s) 51, 192, 195, 224
Tsp45I GTSAC 1 cut(s) 401
TspDTI ATGAA 1 cut(s) 468
Vha464I CTTAAG 1 cut(s) 440
VpaK11BI GGWCC 1 cut(s) 368
XcmI CCANNNNNNNNNTGG 1 cut(s) 577
XmaJI CCTAGG 1 cut(s) 245
XspI CTAG 2 cut(s) 246, 545
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.