Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001534

Physical Location & Seq

Genomic Coordinates Forward (+)

46618467 .. 46626678

Gene Structure 8212 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG272100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGATTGCCCAGGTCGAATCATCTTCTCTTCGGCCTCAATTTCGGGTTCGATCGGAGCTCCAAACAGCTGCTCCACTGTGTGGTCCAACTCCATTTCACCTCCTTGCTGCCCATGGTGGCTCAGAGTTGCTTGTAATGCTCCATAACAGTATCGGGTTTTTGGTAGTCCAGATAGGTCTGGAAGATGAGGTTGTGGGTGACGATGTTGGGGTCTGGTGCCTTGGCAGCAGCGATGATGCTCCTGGGTCGTGCAAGGCAGCGACATTGGGCTGTGTTCCTGGGCAACCTGGCTCGGTGACGGTTCTGGGTTCTGAGCAGGACGATTTGGTGGCCGATAGTGGCCGGGTTCCAGACTGGAGTTCTGAGCGGTTGTCTAGGGTTGGACCTCGACTTCTGTTGATGGCGGCCATGCATTGCGACTTCAATCTGGCTTGCGGTGACGTTGATCTCTTGCTTAAGGAACGGCCTGATGTTCTTGGGTCAGGGTTGGCTGCGGCTTGGTGCGGTGAAGATTGCGGCGAGCAGCAGGGTCAGATCTTCTTGACTGGCGTCGTTGAAGGGAGGCGGACCAGTGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

192

Amino Acids

20.1

Weight (kDa)

4.49

Isoelectric Point (pI)

47.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001534)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33467 AT4G33467
fragaria_vesca	FvH4_1g13550
malus_domestica	MD02G1150700.v1.1 MD15G1265300.v1.1
prunus_persica	Prupe.7G152300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0101941 RchiOBHm_Chr7g0231621
rosa_laevigata	RLG00000003218 RLG00000003459 RLG00000005525 RLG00000005735 RLG00000008080 RLG00000009250 RLG00000012890 RLG00000014921 RLG00000016044 RLG00000017118 RLG00000017262 RLG00000018139 RLG00000018892 RLG00000019095 RLG00000020815 RLG00000023064 RLG00000024324 RLG00000024611 RLG00000024901 RLG00000025131 RLG00000026573 RLG00000028471 RLG00000029991 RLG00000030471 RLG00000033464 RLG00000033615
rosa_multiflora	Rmu_sc0000697.1_g000010 Rmu_sc0004767.1_g000002 Rmu_sc0012270.1_g000006
rosa_roxburghii	Rroxscaffold_2G00132820 Rroxscaffold_2G00140910 Rroxscaffold_3G00223440 Rroxscaffold_3G00265480 Rroxscaffold_5G00344290
rosa_rugosa	Rorug02G0103200 Rorug05G0210700 Rorug06G0152900
rosa_samantha	Rh2AG151300 Rh2BG156800 Rh2CG156600 Rh2DG156900 Rh6AG272100
rosa_wichuraiana	Rw2G011810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	216
AccB7I	CCANNNNNTGG	1 cut(s)	80
AccBSI	CCGCTC	1 cut(s)	367
AciI	CCGC	7 cut(s)	367, 404, 435, 494, 504, 516, 565
AcoI	YGGCCR	3 cut(s)	330, 340, 405
AcyI	GRCGYC	1 cut(s)	549
AdeI	CACNNNGTG	1 cut(s)	80
AfiI	CCNNNNNNNGG	1 cut(s)	80
AflII	CTTAAG	1 cut(s)	455
AgsI	TTSAA	2 cut(s)	424, 557
AjnI	CCWGG	4 cut(s)	9, 241, 277, 286
AluBI	AGCT	2 cut(s)	58, 68
AluI	AGCT	2 cut(s)	58, 68
Alw21I	GWGCWC	1 cut(s)	60
AoxI	GGCC	5 cut(s)	32, 330, 340, 405, 464
ApeKI	GCWGC	7 cut(s)	68, 107, 225, 228, 257, 491, 523
AspS9I	GGNCC	3 cut(s)	83, 383, 567
AsuC2I	CCSGG	1 cut(s)	344
AsuHPI	GGTGA	5 cut(s)	89, 209, 307, 449, 518
AvaII	GGWCC	3 cut(s)	83, 383, 567
BanI	GGYRCC	1 cut(s)	216
BanII	GRGCYC	1 cut(s)	60
Bbv12I	GWGCWC	1 cut(s)	60
BbvI	GCAGC	7 cut(s)	55, 94, 237, 240, 269, 478, 535
BccI	CCATC	1 cut(s)	394
BceAI	ACGGC	1 cut(s)	479
BciT130I	CCWGG	4 cut(s)	11, 243, 279, 288
BcnI	CCSGG	1 cut(s)	344
BfaI	CTAG	1 cut(s)	375
BfrI	CTTAAG	1 cut(s)	455
BglII	AGATCT	1 cut(s)	534
Bme1390I	CCNGG	5 cut(s)	11, 243, 279, 288, 344
Bme18I	GGWCC	3 cut(s)	83, 383, 567
BmgT120I	GGNCC	3 cut(s)	83, 383, 567
BmiI	GGNNCC	2 cut(s)	218, 348
BmrFI	CCNGG	5 cut(s)	11, 243, 279, 288, 344
BmsI	GCATC	1 cut(s)	226
BoxI	GACNNNNGTC	1 cut(s)	548
BpmI	CTGGAG	1 cut(s)	376
BpuMI	CCSGG	1 cut(s)	344
BsaHI	GRCGYC	1 cut(s)	549
BsaJI	CCNNGG	5 cut(s)	9, 112, 220, 242, 278
BsaXI	ACNNNNNCTCC	2 cut(s)	55, 85
Bsc4I	CCNNNNNNNGG	1 cut(s)	80
Bse1I	ACTGG	3 cut(s)	359, 550, 570
Bse3DI	GCAATG	1 cut(s)	412
BseBI	CCWGG	4 cut(s)	11, 243, 279, 288
BseDI	CCNNGG	5 cut(s)	9, 112, 220, 242, 278
BseLI	CCNNNNNNNGG	1 cut(s)	80
BseMI	GCAATG	1 cut(s)	412
BseMII	CTCAG	3 cut(s)	135, 303, 354
BseNI	ACTGG	3 cut(s)	359, 550, 570
BseXI	GCAGC	7 cut(s)	55, 94, 237, 240, 269, 478, 535
Bsh1285I	CGRYCG	1 cut(s)	53
BshFI	GGCC	5 cut(s)	34, 332, 342, 407, 466
BshNI	GGYRCC	1 cut(s)	216
BsiEI	CGRYCG	1 cut(s)	53
BsiHKAI	GWGCWC	1 cut(s)	60
BsiSI	CCGG	1 cut(s)	343
BslI	CCNNNNNNNGG	1 cut(s)	80
BsnI	GGCC	5 cut(s)	34, 332, 342, 407, 466
Bsp1286I	GDGCHC	1 cut(s)	60
Bsp143I	GATC	3 cut(s)	50, 445, 534
Bsp19I	CCATGG	1 cut(s)	112
BspACI	CCGC	7 cut(s)	367, 404, 435, 494, 504, 516, 565
BspANI	GGCC	5 cut(s)	34, 332, 342, 407, 466
BspCNI	CTCAG	3 cut(s)	134, 304, 355
BspLI	GGNNCC	2 cut(s)	218, 348
BspT107I	GGYRCC	1 cut(s)	216
BspTI	CTTAAG	1 cut(s)	455
BsrBI	CCGCTC	1 cut(s)	367
BsrDI	GCAATG	1 cut(s)	412
BsrI	ACTGG	3 cut(s)	359, 550, 570
BssECI	CCNNGG	5 cut(s)	9, 112, 220, 242, 278
BssMI	GATC	3 cut(s)	50, 445, 534
BssNI	GRCGYC	1 cut(s)	549
BssT1I	CCWWGG	2 cut(s)	112, 220
Bst2UI	CCWGG	4 cut(s)	11, 243, 279, 288
Bst4CI	ACNGT	3 cut(s)	78, 149, 301
Bst6I	CTCTTC	1 cut(s)	33
BstACI	GRCGYC	1 cut(s)	549
BstAFI	CTTAAG	1 cut(s)	455
BstC8I	GCNNGC	2 cut(s)	433, 521
BstDEI	CTNAG	3 cut(s)	121, 312, 363
BstDSI	CCRYGG	1 cut(s)	112
BstKTI	GATC	3 cut(s)	53, 448, 537
BstMBI	GATC	3 cut(s)	50, 445, 534
BstMCI	CGRYCG	1 cut(s)	53
BstMWI	GCNNNNNNNGC	2 cut(s)	136, 225
BstNI	CCWGG	4 cut(s)	11, 243, 279, 288
BstPAI	GACNNNNGTC	1 cut(s)	548
BstSCI	CCNGG	5 cut(s)	9, 241, 277, 286, 342
BstV1I	GCAGC	7 cut(s)	55, 94, 237, 240, 269, 478, 535
BstX2I	RGATCY	1 cut(s)	534
BstYI	RGATCY	1 cut(s)	534
BsuRI	GGCC	5 cut(s)	34, 332, 342, 407, 466
BtgI	CCRYGG	1 cut(s)	112
BtgZI	GCGATG	1 cut(s)	246
BtsIMutI	CAGTG	2 cut(s)	74, 577
Cac8I	GCNNGC	2 cut(s)	433, 521
Cfr13I	GGNCC	3 cut(s)	83, 383, 567
CseI	GACGC	1 cut(s)	538
CviAII	CATG	2 cut(s)	113, 409
DdeI	CTNAG	3 cut(s)	121, 312, 363
DpnI	GATC	3 cut(s)	52, 447, 536
DpnII	GATC	3 cut(s)	50, 445, 534
DraIII	CACNNNGTG	1 cut(s)	80
EaeI	YGGCCR	3 cut(s)	330, 340, 405
Eam1104I	CTCTTC	1 cut(s)	33
EarI	CTCTTC	1 cut(s)	33
Ecl136II	GAGCTC	1 cut(s)	58
Eco130I	CCWWGG	2 cut(s)	112, 220
Eco24I	GRGCYC	1 cut(s)	60
Eco47I	GGWCC	3 cut(s)	83, 383, 567
Eco53kI	GAGCTC	1 cut(s)	58
EcoICRI	GAGCTC	1 cut(s)	58
EcoRII	CCWGG	4 cut(s)	9, 241, 277, 286
EcoT14I	CCWWGG	2 cut(s)	112, 220
EcoT22I	ATGCAT	1 cut(s)	414
EcoT38I	GRGCYC	1 cut(s)	60
ErhI	CCWWGG	2 cut(s)	112, 220
FaeI	CATG	2 cut(s)	116, 412
FaiI	YATR	3 cut(s)	114, 144, 410
FatI	CATG	2 cut(s)	112, 408
FriOI	GRGCYC	1 cut(s)	60
FspBI	CTAG	1 cut(s)	375
GsuI	CTGGAG	1 cut(s)	376
HaeIII	GGCC	5 cut(s)	34, 332, 342, 407, 466
HapII	CCGG	1 cut(s)	343
HgaI	GACGC	1 cut(s)	538
Hin1I	GRCGYC	1 cut(s)	549
Hin1II	CATG	2 cut(s)	116, 412
HinfI	GANTC	1 cut(s)	17
HpaII	CCGG	1 cut(s)	343
HphI	GGTGA	5 cut(s)	89, 209, 307, 449, 518
Hpy188I	TCNGA	5 cut(s)	55, 124, 313, 364, 534
Hpy188III	TCNNGA	4 cut(s)	169, 179, 350, 541
Hpy99I	CGWCG	1 cut(s)	554
HpyAV	CCTTC	1 cut(s)	551
HpyCH4III	ACNGT	3 cut(s)	78, 149, 301
HpyCH4IV	ACGT	1 cut(s)	441
HpyCH4V	TGCA	2 cut(s)	252, 412
HpyF10VI	GCNNNNNNNGC	2 cut(s)	136, 225
HpyF3I	CTNAG	3 cut(s)	121, 312, 363
HpySE526I	ACGT	1 cut(s)	441
Hsp92I	GRCGYC	1 cut(s)	549
Hsp92II	CATG	2 cut(s)	116, 412
Kzo9I	GATC	3 cut(s)	50, 445, 534
LmnI	GCTCC	5 cut(s)	55, 63, 76, 144, 244
Lsp1109I	GCAGC	7 cut(s)	55, 94, 237, 240, 269, 478, 535
LweI	GCATC	1 cut(s)	226
MaeI	CTAG	1 cut(s)	375
MaeII	ACGT	1 cut(s)	441
MaeIII	GTNAC	3 cut(s)	197, 295, 437
MalI	GATC	3 cut(s)	52, 447, 536
MbiI	CCGCTC	1 cut(s)	367
MboI	GATC	3 cut(s)	50, 445, 534
MboII	GAAGA	5 cut(s)	15, 20, 194, 521, 529
MflI	RGATCY	1 cut(s)	534
MhlI	GDGCHC	1 cut(s)	60
MluCI	AATT	1 cut(s)	38
MmeI	TCCRAC	2 cut(s)	110, 361
MnlI	CCTC	5 cut(s)	45, 110, 181, 396, 555
Mph1103I	ATGCAT	1 cut(s)	414
MseI	TTAA	1 cut(s)	456
MspA1I	CMGCKG	1 cut(s)	68
MspCI	CTTAAG	1 cut(s)	455
MspI	CCGG	1 cut(s)	343
MspR9I	CCNGG	5 cut(s)	11, 243, 279, 288, 344
MvaI	CCWGG	4 cut(s)	11, 243, 279, 288
MwoI	GCNNNNNNNGC	2 cut(s)	136, 225
NciI	CCSGG	1 cut(s)	344
NcoI	CCATGG	1 cut(s)	112
NdeII	GATC	3 cut(s)	50, 445, 534
NlaIII	CATG	2 cut(s)	116, 412
NlaIV	GGNNCC	2 cut(s)	218, 348
NmuCI	GTSAC	3 cut(s)	197, 295, 437
NsiI	ATGCAT	1 cut(s)	414
PfeI	GAWTC	1 cut(s)	17
PflMI	CCANNNNNTGG	1 cut(s)	80
Ple19I	CGATCG	1 cut(s)	53
PshAI	GACNNNNGTC	1 cut(s)	548
Psp124BI	GAGCTC	1 cut(s)	60
Psp6I	CCWGG	4 cut(s)	9, 241, 277, 286
PspGI	CCWGG	4 cut(s)	9, 241, 277, 286
PspN4I	GGNNCC	2 cut(s)	218, 348
PspPI	GGNCC	3 cut(s)	83, 383, 567
PsuI	RGATCY	1 cut(s)	534
PvuI	CGATCG	1 cut(s)	53
PvuII	CAGCTG	1 cut(s)	68
SacI	GAGCTC	1 cut(s)	60
SaqAI	TTAA	1 cut(s)	456
Sau3AI	GATC	3 cut(s)	50, 445, 534
Sau96I	GGNCC	3 cut(s)	83, 383, 567
ScrFI	CCNGG	5 cut(s)	11, 243, 279, 288, 344
SduI	GDGCHC	1 cut(s)	60
SetI	ASST	9 cut(s)	15, 60, 70, 102, 178, 192, 289, 388, 444
SfaNI	GCATC	1 cut(s)	226
SinI	GGWCC	3 cut(s)	83, 383, 567
SmlI	CTYRAG	1 cut(s)	455
SmoI	CTYRAG	1 cut(s)	455
Sse9I	AATT	1 cut(s)	38
SsiI	CCGC	7 cut(s)	367, 404, 435, 494, 504, 516, 565
SspMI	CTAG	1 cut(s)	375
SstI	GAGCTC	1 cut(s)	60
StyD4I	CCNGG	5 cut(s)	9, 241, 277, 286, 342
StyI	CCWWGG	2 cut(s)	112, 220
TaaI	ACNGT	3 cut(s)	78, 149, 301
TaiI	ACGT	1 cut(s)	444
TaqI	TCGA	3 cut(s)	15, 49, 388
TasI	AATT	1 cut(s)	38
TauI	GCSGC	3 cut(s)	407, 497, 519
TfiI	GAWTC	1 cut(s)	17
Tru1I	TTAA	1 cut(s)	456
Tru9I	TTAA	1 cut(s)	456
TscAI	CASTG	2 cut(s)	81, 577
TseFI	GTSAC	3 cut(s)	197, 295, 437
TseI	GCWGC	7 cut(s)	68, 107, 225, 228, 257, 491, 523
Tsp45I	GTSAC	3 cut(s)	197, 295, 437
TspRI	CASTG	2 cut(s)	81, 577
Van91I	CCANNNNNTGG	1 cut(s)	80
Vha464I	CTTAAG	1 cut(s)	455
VpaK11BI	GGWCC	3 cut(s)	83, 383, 567
XspI	CTAG	1 cut(s)	375
Zsp2I	ATGCAT	1 cut(s)	414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.