Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001534

Physical Location & Seq

Genomic Coordinates Forward (+)

14302175 .. 14302912

Gene Structure 738 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00344290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGAAGAGCTTCGTCTCGAGTGGCTATTCACGGCAGCGGCAATGGTTTCGGGTCTTTCTTGACCCGGGATGTTTGGGAAGGTTTGGCTCGTCGGGTCGCGGAGCCGAGCACAGGAGAGAAGTCCGCCTCCTCGGATTTCGTTTTGTGCTAAGCGGCCGGGCGGGGACGGTGGCCGATGATCGGTCGCCGTACAAGGAGGCTTGCACGGCCGGGCTAATAGATGTAGCACTAATCAGTGCCGGAGTGGGGTTGGTTGCTGCCGGGAGAGGAGACGATGGCGACAACCAACGGTGGATAACCACCCAGTCCGGCGTCGTCAACCGGAGGCGGTCCGGTGTGCCGCCGTACTTGATTTGGGTGCCCATAAGTTTGGGTGGCCTTAGCAGGTCCAGTTGGGCTTGGAACCTTTCGGGCCTCGTGCTAGGGCAATCCCATTCTTTTGGGCTTCGATTAGTAGTGACTCTTTTGACAGTCCCACCAGATGGGTCATTATGTGTAATTTCGCCGATCAATGCAATGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

174

Amino Acids

18.72

Weight (kDa)

10.71

Isoelectric Point (pI)

56.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001534)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33467 AT4G33467
fragaria_vesca	FvH4_1g13550
malus_domestica	MD02G1150700.v1.1 MD15G1265300.v1.1
prunus_persica	Prupe.7G152300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0101941 RchiOBHm_Chr7g0231621
rosa_laevigata	RLG00000003218 RLG00000003459 RLG00000005525 RLG00000005735 RLG00000008080 RLG00000009250 RLG00000012890 RLG00000014921 RLG00000016044 RLG00000017118 RLG00000017262 RLG00000018139 RLG00000018892 RLG00000019095 RLG00000020815 RLG00000023064 RLG00000024324 RLG00000024611 RLG00000024901 RLG00000025131 RLG00000026573 RLG00000028471 RLG00000029991 RLG00000030471 RLG00000033464 RLG00000033615
rosa_multiflora	Rmu_sc0000697.1_g000010 Rmu_sc0004767.1_g000002 Rmu_sc0012270.1_g000006
rosa_roxburghii	Rroxscaffold_2G00132820 Rroxscaffold_2G00140910 Rroxscaffold_3G00223440 Rroxscaffold_3G00265480 Rroxscaffold_5G00344290
rosa_rugosa	Rorug02G0103200 Rorug05G0210700 Rorug06G0152900
rosa_samantha	Rh2AG151300 Rh2BG156800 Rh2CG156600 Rh2DG156900 Rh6AG272100
rosa_wichuraiana	Rw2G011810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	375
AccB1I	GGYRCC	1 cut(s)	358
AccB7I	CCANNNNNTGG	1 cut(s)	482
AccII	CGCG	1 cut(s)	99
AciI	CCGC	7 cut(s)	37, 99, 124, 153, 161, 328, 341
AcoI	YGGCCR	3 cut(s)	154, 171, 207
AcyI	GRCGYC	1 cut(s)	312
AfaI	GTAC	2 cut(s)	191, 347
AfiI	CCNNNNNNNGG	4 cut(s)	111, 180, 246, 482
AluBI	AGCT	1 cut(s)	9
AluI	AGCT	1 cut(s)	9
Alw21I	GWGCWC	1 cut(s)	111
Alw26I	GTCTC	2 cut(s)	19, 264
Ama87I	CYCGRG	2 cut(s)	16, 64
AoxI	GGCC	5 cut(s)	154, 171, 207, 376, 412
ApeKI	GCWGC	2 cut(s)	34, 257
Asp700I	GAANNNNTTC	1 cut(s)	8
AspS9I	GGNCC	3 cut(s)	330, 387, 412
AsuC2I	CCSGG	5 cut(s)	65, 66, 158, 211, 262
AvaI	CYCGRG	2 cut(s)	16, 64
AvaII	GGWCC	2 cut(s)	330, 387
BaeGI	GKGCMC	1 cut(s)	363
BanI	GGYRCC	1 cut(s)	358
BauI	CACGAG	1 cut(s)	416
Bbv12I	GWGCWC	1 cut(s)	111
BbvI	GCAGC	2 cut(s)	46, 244
BccI	CCATC	2 cut(s)	269, 476
BceAI	ACGGC	4 cut(s)	47, 172, 222, 328
BcgI	CGANNNNNNTGC	2 cut(s)	29, 63
BcnI	CCSGG	5 cut(s)	65, 66, 158, 211, 262
BcoDI	GTCTC	2 cut(s)	19, 264
BfaI	CTAG	1 cut(s)	422
BfuAI	ACCTGC	1 cut(s)	375
BisI	GCNGC	5 cut(s)	35, 38, 154, 258, 341
BlpI	GCTNAGC	1 cut(s)	149
BlsI	GCNGC	5 cut(s)	36, 39, 155, 259, 342
Bme1390I	CCNGG	5 cut(s)	65, 66, 158, 211, 262
Bme18I	GGWCC	2 cut(s)	330, 387
BmeT110I	CYCGRG	2 cut(s)	16, 64
BmgT120I	GGNCC	3 cut(s)	330, 387, 412
BmiI	GGNNCC	3 cut(s)	103, 360, 404
BmrFI	CCNGG	5 cut(s)	65, 66, 158, 211, 262
BmrI	ACTGGG	1 cut(s)	298
BmuI	ACTGGG	1 cut(s)	298
Bpu10I	CCTNAGC	1 cut(s)	380
Bpu1102I	GCTNAGC	1 cut(s)	149
BpuMI	CCSGG	5 cut(s)	65, 66, 158, 211, 262
BsaHI	GRCGYC	1 cut(s)	312
BsaJI	CCNNGG	2 cut(s)	64, 130
BsaWI	WCCGGW	2 cut(s)	321, 332
Bsc4I	CCNNNNNNNGG	4 cut(s)	111, 180, 246, 482
Bse1I	ACTGG	2 cut(s)	304, 390
Bse3DI	GCAATG	2 cut(s)	47, 522
BseDI	CCNNGG	2 cut(s)	64, 130
BseGI	GGATG	1 cut(s)	74
BseLI	CCNNNNNNNGG	4 cut(s)	111, 180, 246, 482
BseMI	GCAATG	2 cut(s)	47, 522
BseNI	ACTGG	2 cut(s)	304, 390
BseRI	GAGGAG	2 cut(s)	119, 282
BseSI	GKGCMC	1 cut(s)	363
BseX3I	CGGCCG	2 cut(s)	154, 207
BseXI	GCAGC	2 cut(s)	46, 244
Bsh1236I	CGCG	1 cut(s)	99
Bsh1285I	CGRYCG	3 cut(s)	157, 185, 210
BshFI	GGCC	5 cut(s)	156, 173, 209, 378, 414
BshNI	GGYRCC	1 cut(s)	358
BsiEI	CGRYCG	3 cut(s)	157, 185, 210
BsiHKAI	GWGCWC	1 cut(s)	111
BsiHKCI	CYCGRG	2 cut(s)	16, 64
BsiSI	CCGG	8 cut(s)	65, 157, 210, 240, 261, 309, 322, 333
BslFI	GGGAC	2 cut(s)	178, 458
BslI	CCNNNNNNNGG	4 cut(s)	111, 180, 246, 482
BsmAI	GTCTC	2 cut(s)	19, 264
BsmBI	CGTCTC	2 cut(s)	19, 264
BsmFI	GGGAC	2 cut(s)	178, 458
BsnI	GGCC	5 cut(s)	156, 173, 209, 378, 414
BsoBI	CYCGRG	2 cut(s)	16, 64
Bsp1286I	GDGCHC	2 cut(s)	111, 363
Bsp143I	GATC	2 cut(s)	178, 507
Bsp1720I	GCTNAGC	1 cut(s)	149
BspACI	CCGC	7 cut(s)	37, 99, 124, 153, 161, 328, 341
BspANI	GGCC	5 cut(s)	156, 173, 209, 378, 414
BspFNI	CGCG	1 cut(s)	99
BspLI	GGNNCC	3 cut(s)	103, 360, 404
BspMI	ACCTGC	1 cut(s)	375
BspT107I	GGYRCC	1 cut(s)	358
BsrDI	GCAATG	2 cut(s)	47, 522
BsrI	ACTGG	2 cut(s)	304, 390
BssECI	CCNNGG	2 cut(s)	64, 130
BssMI	GATC	2 cut(s)	178, 507
BssNI	GRCGYC	1 cut(s)	312
BssSI	CACGAG	1 cut(s)	416
Bst2BI	CACGAG	1 cut(s)	416
Bst4CI	ACNGT	3 cut(s)	169, 291, 472
BstACI	GRCGYC	1 cut(s)	312
BstC8I	GCNNGC	1 cut(s)	202
BstDEI	CTNAG	2 cut(s)	149, 380
BstF5I	GGATG	1 cut(s)	74
BstFNI	CGCG	1 cut(s)	99
BstKTI	GATC	2 cut(s)	181, 510
BstMAI	GTCTC	2 cut(s)	19, 264
BstMBI	GATC	2 cut(s)	178, 507
BstMCI	CGRYCG	3 cut(s)	157, 185, 210
BstMWI	GCNNNNNNNGC	1 cut(s)	206
BstSCI	CCNGG	5 cut(s)	63, 64, 156, 209, 260
BstSLI	GKGCMC	1 cut(s)	363
BstUI	CGCG	1 cut(s)	99
BstV1I	GCAGC	2 cut(s)	46, 244
BstXI	CCANNNNNNTGG	2 cut(s)	370, 440
BstZI	CGGCCG	2 cut(s)	154, 207
BsuRI	GGCC	5 cut(s)	156, 173, 209, 378, 414
BtsCI	GGATG	1 cut(s)	74
BtsIMutI	CAGTG	1 cut(s)	241
BveI	ACCTGC	1 cut(s)	375
Cac8I	GCNNGC	1 cut(s)	202
Cfr13I	GGNCC	3 cut(s)	330, 387, 412
Cfr9I	CCCGGG	1 cut(s)	64
CpoI	CGGWCCG	1 cut(s)	330
CseI	GACGC	1 cut(s)	301
Csp6I	GTAC	2 cut(s)	190, 346
CspI	CGGWCCG	1 cut(s)	330
CviQI	GTAC	2 cut(s)	190, 346
DdeI	CTNAG	2 cut(s)	149, 380
DpnI	GATC	2 cut(s)	180, 509
DpnII	GATC	2 cut(s)	178, 507
EaeI	YGGCCR	3 cut(s)	154, 171, 207
EagI	CGGCCG	2 cut(s)	154, 207
EciI	GGCGGA	1 cut(s)	113
EclXI	CGGCCG	2 cut(s)	154, 207
Eco47I	GGWCC	2 cut(s)	330, 387
Eco52I	CGGCCG	2 cut(s)	154, 207
Eco88I	CYCGRG	2 cut(s)	16, 64
Esp3I	CGTCTC	2 cut(s)	19, 264
FaiI	YATR	2 cut(s)	365, 493
FaqI	GGGAC	2 cut(s)	178, 458
FauI	CCCGC	1 cut(s)	154
Fnu4HI	GCNGC	5 cut(s)	35, 38, 154, 258, 341
FokI	GGATG	1 cut(s)	81
Fsp4HI	GCNGC	5 cut(s)	35, 38, 154, 258, 341
FspBI	CTAG	1 cut(s)	422
GluI	GCNGC	5 cut(s)	35, 38, 154, 258, 341
HaeIII	GGCC	5 cut(s)	156, 173, 209, 378, 414
HapII	CCGG	8 cut(s)	65, 157, 210, 240, 261, 309, 322, 333
HgaI	GACGC	1 cut(s)	301
Hin1I	GRCGYC	1 cut(s)	312
HincII	GTYRAC	1 cut(s)	319
HindII	GTYRAC	1 cut(s)	319
HinfI	GANTC	1 cut(s)	460
HpaII	CCGG	8 cut(s)	65, 157, 210, 240, 261, 309, 322, 333
Hpy166II	GTNNAC	1 cut(s)	319
Hpy188I	TCNGA	1 cut(s)	134
Hpy188III	TCNNGA	2 cut(s)	16, 59
Hpy8I	GTNNAC	1 cut(s)	319
Hpy99I	CGWCG	2 cut(s)	94, 317
HpyAV	CCTTC	1 cut(s)	72
HpyCH4III	ACNGT	3 cut(s)	169, 291, 472
HpyCH4V	TGCA	2 cut(s)	204, 515
HpyF10VI	GCNNNNNNNGC	1 cut(s)	206
HpyF3I	CTNAG	2 cut(s)	149, 380
Hsp92I	GRCGYC	1 cut(s)	312
Kzo9I	GATC	2 cut(s)	178, 507
LmnI	GCTCC	1 cut(s)	101
Lsp1109I	GCAGC	2 cut(s)	46, 244
MaeI	CTAG	1 cut(s)	422
MaeIII	GTNAC	1 cut(s)	457
MalI	GATC	2 cut(s)	180, 509
MboI	GATC	2 cut(s)	178, 507
MboII	GAAGA	1 cut(s)	16
MhlI	GDGCHC	2 cut(s)	111, 363
MluCI	AATT	1 cut(s)	498
MlyI	GAGTC	1 cut(s)	454
MnlI	CCTC	6 cut(s)	137, 140, 190, 260, 318, 425
MroXI	GAANNNNTTC	1 cut(s)	8
MspA1I	CMGCKG	1 cut(s)	37
MspI	CCGG	8 cut(s)	65, 157, 210, 240, 261, 309, 322, 333
MspR9I	CCNGG	5 cut(s)	65, 66, 158, 211, 262
MvnI	CGCG	1 cut(s)	99
MwoI	GCNNNNNNNGC	1 cut(s)	206
NciI	CCSGG	5 cut(s)	65, 66, 158, 211, 262
NdeII	GATC	2 cut(s)	178, 507
NlaIV	GGNNCC	3 cut(s)	103, 360, 404
NmeAIII	GCCGAG	1 cut(s)	130
NmuCI	GTSAC	1 cut(s)	457
PaeR7I	CTCGAG	1 cut(s)	16
PdmI	GAANNNNTTC	1 cut(s)	8
PflMI	CCANNNNNTGG	1 cut(s)	482
PkrI	GCNGC	5 cut(s)	36, 39, 155, 259, 342
PleI	GAGTC	1 cut(s)	454
PpsI	GAGTC	1 cut(s)	454
PspN4I	GGNNCC	3 cut(s)	103, 360, 404
PspPI	GGNCC	3 cut(s)	330, 387, 412
RsaI	GTAC	2 cut(s)	191, 347
RsaNI	GTAC	2 cut(s)	190, 346
Rsr2I	CGGWCCG	1 cut(s)	330
RsrII	CGGWCCG	1 cut(s)	330
SatI	GCNGC	5 cut(s)	35, 38, 154, 258, 341
Sau3AI	GATC	2 cut(s)	178, 507
Sau96I	GGNCC	3 cut(s)	330, 387, 412
SchI	GAGTC	1 cut(s)	454
ScrFI	CCNGG	5 cut(s)	65, 66, 158, 211, 262
SduI	GDGCHC	2 cut(s)	111, 363
SetI	ASST	4 cut(s)	11, 83, 389, 408
Sfr274I	CTCGAG	1 cut(s)	16
SinI	GGWCC	2 cut(s)	330, 387
SlaI	CTCGAG	1 cut(s)	16
SmaI	CCCGGG	1 cut(s)	66
SmlI	CTYRAG	1 cut(s)	16
SmoI	CTYRAG	1 cut(s)	16
Sse9I	AATT	1 cut(s)	498
SsiI	CCGC	7 cut(s)	37, 99, 124, 153, 161, 328, 341
SspMI	CTAG	1 cut(s)	422
StyD4I	CCNGG	5 cut(s)	63, 64, 156, 209, 260
TaaI	ACNGT	3 cut(s)	169, 291, 472
TaqI	TCGA	2 cut(s)	17, 448
TaqII	GACCGA	1 cut(s)	171
TasI	AATT	1 cut(s)	498
TauI	GCSGC	3 cut(s)	40, 156, 343
TscAI	CASTG	1 cut(s)	241
TseFI	GTSAC	1 cut(s)	457
TseI	GCWGC	2 cut(s)	34, 257
Tsp45I	GTSAC	1 cut(s)	457
TspDTI	ATGAA	1 cut(s)	17
TspMI	CCCGGG	1 cut(s)	64
TspRI	CASTG	1 cut(s)	241
Van91I	CCANNNNNTGG	1 cut(s)	482
VpaK11BI	GGWCC	2 cut(s)	330, 387
XhoI	CTCGAG	1 cut(s)	16
XmaI	CCCGGG	1 cut(s)	64
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.