Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001534

Physical Location & Seq

Genomic Coordinates Reverse (-)

40154767 .. 40155313

Gene Structure 547 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024901

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGCTTTGGTTACTCTCTCTGAGAGGTGCGTGGAGGCCGTGGCCTCTTGGCGGCAGTCTGCAAATTGGGCTGGAGGATATGGGATTTCCCTCTCATCTGCGATGGTATTTTTGGGCAGCACACGGCAGCGCCAGTGGGCGGTGTTCTTGGGCAATCTGGATCGGTGATGGTCCTGGGGTCTCGATGCTTGGTGCGCTGTCTGAGCAGGAAGATCTGGTGGTCACGGCCGGTCGGGGTGTGGACTGGAGCTTCGGGCGGTGGCCTGGGGTGGATTTTCAACCTTTGTTGCTGGTAGTCGAGGATAGTGACGGAGGTGGCGACGTCCACTACCTTAGCTTAGGGTTGACTGCGGCTTGGTGTGGCGAAGGTTACGGCGGACTGCTGGGTCAGTTGTTGACCGGCGTCGTTGAAAGGAGGAAGACTGGTGGTTGGCATGCAGCTGATGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

150

Amino Acids

16.02

Weight (kDa)

4.98

Isoelectric Point (pI)

40.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001534)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33467 AT4G33467
fragaria_vesca	FvH4_1g13550
malus_domestica	MD02G1150700.v1.1 MD15G1265300.v1.1
prunus_persica	Prupe.7G152300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0101941 RchiOBHm_Chr7g0231621
rosa_laevigata	RLG00000003218 RLG00000003459 RLG00000005525 RLG00000005735 RLG00000008080 RLG00000009250 RLG00000012890 RLG00000014921 RLG00000016044 RLG00000017118 RLG00000017262 RLG00000018139 RLG00000018892 RLG00000019095 RLG00000020815 RLG00000023064 RLG00000024324 RLG00000024611 RLG00000024901 RLG00000025131 RLG00000026573 RLG00000028471 RLG00000029991 RLG00000030471 RLG00000033464 RLG00000033615
rosa_multiflora	Rmu_sc0000697.1_g000010 Rmu_sc0004767.1_g000002 Rmu_sc0012270.1_g000006
rosa_roxburghii	Rroxscaffold_2G00132820 Rroxscaffold_2G00140910 Rroxscaffold_3G00223440 Rroxscaffold_3G00265480 Rroxscaffold_5G00344290
rosa_rugosa	Rorug02G0103200 Rorug05G0210700 Rorug06G0152900
rosa_samantha	Rh2AG151300 Rh2BG156800 Rh2CG156600 Rh2DG156900 Rh6AG272100
rosa_wichuraiana	Rw2G011810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	384
AatII	GACGTC	1 cut(s)	324
AciI	CCGC	5 cut(s)	51, 139, 256, 350, 375
AclWI	GGATC	1 cut(s)	167
AcoI	YGGCCR	1 cut(s)	225
AcyI	GRCGYC	2 cut(s)	321, 402
AfiI	CCNNNNNNNGG	2 cut(s)	50, 138
AgsI	TTSAA	2 cut(s)	278, 410
AjnI	CCWGG	2 cut(s)	172, 262
AluBI	AGCT	3 cut(s)	249, 336, 440
AluI	AGCT	3 cut(s)	249, 336, 440
Alw26I	GTCTC	1 cut(s)	184
AlwI	GGATC	1 cut(s)	167
AoxI	GGCC	4 cut(s)	35, 41, 225, 260
ApeKI	GCWGC	3 cut(s)	116, 126, 437
ArsI	GACNNNNNNTTYG	2 cut(s)	233, 265
AspLEI	GCGC	2 cut(s)	131, 196
AspS9I	GGNCC	1 cut(s)	170
AsuHPI	GGTGA	1 cut(s)	176
AvaII	GGWCC	1 cut(s)	170
BbsI	GAAGAC	1 cut(s)	425
BbvI	GCAGC	2 cut(s)	128, 138
BccI	CCATC	3 cut(s)	96, 161, 437
BceAI	ACGGC	4 cut(s)	22, 139, 240, 388
BciT130I	CCWGG	2 cut(s)	174, 264
BcoDI	GTCTC	1 cut(s)	184
BfaI	CTAG	1 cut(s)	448
BfoI	RGCGCY	1 cut(s)	132
BglII	AGATCT	1 cut(s)	211
BisI	GCNGC	5 cut(s)	52, 117, 127, 351, 438
BlsI	GCNGC	5 cut(s)	53, 118, 128, 352, 439
Bme1390I	CCNGG	2 cut(s)	174, 264
Bme18I	GGWCC	1 cut(s)	170
BmgT120I	GGNCC	1 cut(s)	170
BmrFI	CCNGG	2 cut(s)	174, 264
BmsI	GCATC	1 cut(s)	174
BoxI	GACNNNNGTC	1 cut(s)	401
BpiI	GAAGAC	1 cut(s)	425
BpmI	CTGGAG	2 cut(s)	92, 265
Bpu10I	CCTNAGC	2 cut(s)	332, 337
BsaHI	GRCGYC	2 cut(s)	321, 402
BsaI	GGTCTC	1 cut(s)	184
BsaJI	CCNNGG	3 cut(s)	38, 173, 263
Bsc4I	CCNNNNNNNGG	2 cut(s)	50, 138
Bse118I	RCCGGY	2 cut(s)	227, 398
Bse1I	ACTGG	3 cut(s)	132, 248, 427
BseBI	CCWGG	2 cut(s)	174, 264
BseDI	CCNNGG	3 cut(s)	38, 173, 263
BseLI	CCNNNNNNNGG	2 cut(s)	50, 138
BseMII	CTCAG	2 cut(s)	11, 192
BseNI	ACTGG	3 cut(s)	132, 248, 427
BseX3I	CGGCCG	1 cut(s)	225
BseXI	GCAGC	2 cut(s)	128, 138
BseYI	CCCAGC	1 cut(s)	382
Bsh1285I	CGRYCG	2 cut(s)	228, 232
BshFI	GGCC	4 cut(s)	37, 43, 227, 262
BsiEI	CGRYCG	2 cut(s)	228, 232
BsiSI	CCGG	2 cut(s)	228, 399
BslI	CCNNNNNNNGG	2 cut(s)	50, 138
BsmAI	GTCTC	1 cut(s)	184
BsnI	GGCC	4 cut(s)	37, 43, 227, 262
Bso31I	GGTCTC	1 cut(s)	184
Bsp143I	GATC	2 cut(s)	159, 211
BspACI	CCGC	5 cut(s)	51, 139, 256, 350, 375
BspANI	GGCC	4 cut(s)	37, 43, 227, 262
BspCNI	CTCAG	2 cut(s)	12, 193
BspPI	GGATC	1 cut(s)	167
BspTNI	GGTCTC	1 cut(s)	184
BsrFI	RCCGGY	2 cut(s)	227, 398
BsrI	ACTGG	3 cut(s)	132, 248, 427
BssAI	RCCGGY	2 cut(s)	227, 398
BssECI	CCNNGG	3 cut(s)	38, 173, 263
BssMI	GATC	2 cut(s)	159, 211
BssNI	GRCGYC	2 cut(s)	321, 402
Bst2UI	CCWGG	2 cut(s)	174, 264
BstACI	GRCGYC	2 cut(s)	321, 402
BstC8I	GCNNGC	1 cut(s)	435
BstDEI	CTNAG	4 cut(s)	20, 201, 332, 337
BstDSI	CCRYGG	1 cut(s)	38
BstH2I	RGCGCY	1 cut(s)	132
BstHHI	GCGC	2 cut(s)	131, 196
BstKTI	GATC	2 cut(s)	162, 214
BstMAI	GTCTC	1 cut(s)	184
BstMBI	GATC	2 cut(s)	159, 211
BstMCI	CGRYCG	2 cut(s)	228, 232
BstMWI	GCNNNNNNNGC	3 cut(s)	67, 193, 202
BstNI	CCWGG	2 cut(s)	174, 264
BstNSI	RCATGY	1 cut(s)	437
BstPAI	GACNNNNGTC	1 cut(s)	401
BstSCI	CCNGG	2 cut(s)	172, 262
BstV1I	GCAGC	2 cut(s)	128, 138
BstV2I	GAAGAC	1 cut(s)	425
BstX2I	RGATCY	1 cut(s)	211
BstYI	RGATCY	1 cut(s)	211
BstZI	CGGCCG	1 cut(s)	225
BsuRI	GGCC	4 cut(s)	37, 43, 227, 262
BtgI	CCRYGG	1 cut(s)	38
BtgZI	GCGATG	1 cut(s)	115
BtsIMutI	CAGTG	1 cut(s)	139
Cac8I	GCNNGC	1 cut(s)	435
CfoI	GCGC	2 cut(s)	131, 196
Cfr10I	RCCGGY	2 cut(s)	227, 398
Cfr13I	GGNCC	1 cut(s)	170
CseI	GACGC	1 cut(s)	391
CviAII	CATG	1 cut(s)	434
DdeI	CTNAG	4 cut(s)	20, 201, 332, 337
DpnI	GATC	2 cut(s)	161, 213
DpnII	GATC	2 cut(s)	159, 211
DrdI	GACNNNNNNGTC	1 cut(s)	384
DseDI	GACNNNNNNGTC	1 cut(s)	384
EaeI	YGGCCR	1 cut(s)	225
EagI	CGGCCG	1 cut(s)	225
EciI	GGCGGA	1 cut(s)	390
EclXI	CGGCCG	1 cut(s)	225
Eco31I	GGTCTC	1 cut(s)	184
Eco47I	GGWCC	1 cut(s)	170
Eco52I	CGGCCG	1 cut(s)	225
EcoRII	CCWGG	2 cut(s)	172, 262
FaeI	CATG	1 cut(s)	437
FaiI	YATR	2 cut(s)	80, 435
FatI	CATG	1 cut(s)	433
Fnu4HI	GCNGC	5 cut(s)	52, 117, 127, 351, 438
Fsp4HI	GCNGC	5 cut(s)	52, 117, 127, 351, 438
FspBI	CTAG	1 cut(s)	448
GlaI	GCGC	2 cut(s)	130, 195
GluI	GCNGC	5 cut(s)	52, 117, 127, 351, 438
GsaI	CCCAGC	1 cut(s)	386
GsuI	CTGGAG	2 cut(s)	92, 265
HaeII	RGCGCY	1 cut(s)	132
HaeIII	GGCC	4 cut(s)	37, 43, 227, 262
HapII	CCGG	2 cut(s)	228, 399
HgaI	GACGC	1 cut(s)	391
HhaI	GCGC	2 cut(s)	131, 196
Hin1I	GRCGYC	2 cut(s)	321, 402
Hin1II	CATG	1 cut(s)	437
Hin6I	GCGC	2 cut(s)	129, 194
HinP1I	GCGC	2 cut(s)	129, 194
HincII	GTYRAC	2 cut(s)	345, 396
HindII	GTYRAC	2 cut(s)	345, 396
HpaII	CCGG	2 cut(s)	228, 399
HphI	GGTGA	1 cut(s)	176
Hpy166II	GTNNAC	4 cut(s)	241, 325, 345, 396
Hpy188I	TCNGA	2 cut(s)	21, 202
Hpy188III	TCNNGA	2 cut(s)	157, 181
Hpy8I	GTNNAC	4 cut(s)	241, 325, 345, 396
Hpy99I	CGWCG	2 cut(s)	323, 407
HpyAV	CCTTC	1 cut(s)	359
HpyCH4IV	ACGT	1 cut(s)	321
HpyCH4V	TGCA	2 cut(s)	61, 437
HpyF10VI	GCNNNNNNNGC	3 cut(s)	67, 193, 202
HpyF3I	CTNAG	4 cut(s)	20, 201, 332, 337
HpySE526I	ACGT	1 cut(s)	321
Hsp92I	GRCGYC	2 cut(s)	321, 402
Hsp92II	CATG	1 cut(s)	437
HspAI	GCGC	2 cut(s)	129, 194
Kzo9I	GATC	2 cut(s)	159, 211
LmnI	GCTCC	1 cut(s)	246
Lsp1109I	GCAGC	2 cut(s)	128, 138
LweI	GCATC	1 cut(s)	174
MaeI	CTAG	1 cut(s)	448
MaeII	ACGT	1 cut(s)	321
MaeIII	GTNAC	4 cut(s)	9, 220, 305, 368
MalI	GATC	2 cut(s)	161, 213
MboI	GATC	2 cut(s)	159, 211
MboII	GAAGA	2 cut(s)	221, 430
MflI	RGATCY	1 cut(s)	211
MluCI	AATT	1 cut(s)	63
MnlI	CCTC	8 cut(s)	17, 27, 54, 67, 100, 292, 305, 408
MspA1I	CMGCKG	1 cut(s)	440
MspI	CCGG	2 cut(s)	228, 399
MspR9I	CCNGG	2 cut(s)	174, 264
MvaI	CCWGG	2 cut(s)	174, 264
MwoI	GCNNNNNNNGC	3 cut(s)	67, 193, 202
NdeII	GATC	2 cut(s)	159, 211
NlaIII	CATG	1 cut(s)	437
NmuCI	GTSAC	2 cut(s)	220, 305
NspI	RCATGY	1 cut(s)	437
PaeI	GCATGC	1 cut(s)	437
PcsI	WCGNNNNNNNCGW	1 cut(s)	315
PkrI	GCNGC	5 cut(s)	53, 118, 128, 352, 439
PshAI	GACNNNNGTC	1 cut(s)	401
Psp6I	CCWGG	2 cut(s)	172, 262
PspFI	CCCAGC	1 cut(s)	382
PspGI	CCWGG	2 cut(s)	172, 262
PspPI	GGNCC	1 cut(s)	170
PsuI	RGATCY	1 cut(s)	211
PvuII	CAGCTG	1 cut(s)	440
SatI	GCNGC	5 cut(s)	52, 117, 127, 351, 438
Sau3AI	GATC	2 cut(s)	159, 211
Sau96I	GGNCC	1 cut(s)	170
ScrFI	CCNGG	2 cut(s)	174, 264
SetI	ASST	9 cut(s)	28, 251, 283, 316, 324, 333, 338, 370, 442
SfaNI	GCATC	1 cut(s)	174
SinI	GGWCC	1 cut(s)	170
SphI	GCATGC	1 cut(s)	437
Sse9I	AATT	1 cut(s)	63
SsiI	CCGC	5 cut(s)	51, 139, 256, 350, 375
SspMI	CTAG	1 cut(s)	448
StyD4I	CCNGG	2 cut(s)	172, 262
TaiI	ACGT	1 cut(s)	324
TaqI	TCGA	2 cut(s)	182, 297
TasI	AATT	1 cut(s)	63
TauI	GCSGC	2 cut(s)	54, 353
TscAI	CASTG	1 cut(s)	139
TseFI	GTSAC	2 cut(s)	220, 305
TseI	GCWGC	3 cut(s)	116, 126, 437
Tsp45I	GTSAC	2 cut(s)	220, 305
TspGWI	ACGGA	1 cut(s)	324
TspRI	CASTG	1 cut(s)	139
VpaK11BI	GGWCC	1 cut(s)	170
XceI	RCATGY	1 cut(s)	437
XspI	CTAG	1 cut(s)	448
ZraI	GACGTC	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.