Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001534

Physical Location & Seq

Genomic Coordinates Forward (+)

25376619 .. 25377137

Gene Structure 519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008080

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGTGATTCTGGATCGTGCAAGTCAACAACGTTGGGTTGACGATCTGGTGGCCGGTGGTGGCCGAGTTGAGGATTGGAGCTCCGAGCGGTGGTATGGGGTTGGATCTCGACTTTTGTTGATGGCGGCCACGGCTTGCGACATCAACCTGGCTTGCGGCCACAATGTTCTCTTGCTAAAGGGACAGTCTGGTGTTCTTAGGTTGGGGTTGGCTGCGGCTTGGTGCGGCGAAGATTGCGGCTGGCAGCAGGGTCAGATCTTCTCAACCGGCGTCGTTGAAGGGAGGCGGACTAGTGGGTGGTGGCTGTTGGATGGGGTGCCCAAGTGGTTGGGTGGCCTCATCAATTTCGTCTGGGTTTCTATTGGGCCTCCATCTGCTAGGGCTTCCTGTTTGGGTCTGGGCCTATTCTTTGGGCTTGGATTTTATTTATCTTTTACTATTTTTATGCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

151

Amino Acids

16.3

Weight (kDa)

6.54

Isoelectric Point (pI)

54.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001534)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33467 AT4G33467
fragaria_vesca	FvH4_1g13550
malus_domestica	MD02G1150700.v1.1 MD15G1265300.v1.1
prunus_persica	Prupe.7G152300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0101941 RchiOBHm_Chr7g0231621
rosa_laevigata	RLG00000003218 RLG00000003459 RLG00000005525 RLG00000005735 RLG00000008080 RLG00000009250 RLG00000012890 RLG00000014921 RLG00000016044 RLG00000017118 RLG00000017262 RLG00000018139 RLG00000018892 RLG00000019095 RLG00000020815 RLG00000023064 RLG00000024324 RLG00000024611 RLG00000024901 RLG00000025131 RLG00000026573 RLG00000028471 RLG00000029991 RLG00000030471 RLG00000033464 RLG00000033615
rosa_multiflora	Rmu_sc0000697.1_g000010 Rmu_sc0004767.1_g000002 Rmu_sc0012270.1_g000006
rosa_roxburghii	Rroxscaffold_2G00132820 Rroxscaffold_2G00140910 Rroxscaffold_3G00223440 Rroxscaffold_3G00265480 Rroxscaffold_5G00344290
rosa_rugosa	Rorug02G0103200 Rorug05G0210700 Rorug06G0152900
rosa_samantha	Rh2AG151300 Rh2BG156800 Rh2CG156600 Rh2DG156900 Rh6AG272100
rosa_wichuraiana	Rw2G011810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	316
AccBSI	CCGCTC	1 cut(s)	88
AciI	CCGC	7 cut(s)	88, 125, 156, 215, 225, 237, 286
AclI	AACGTT	1 cut(s)	31
AclWI	GGATC	2 cut(s)	21, 112
AcoI	YGGCCR	4 cut(s)	51, 61, 126, 157
AcyI	GRCGYC	1 cut(s)	270
AfiI	CCNNNNNNNGG	2 cut(s)	70, 90
AgsI	TTSAA	1 cut(s)	278
AhlI	ACTAGT	1 cut(s)	290
AjnI	CCWGG	1 cut(s)	147
AluBI	AGCT	1 cut(s)	81
AluI	AGCT	1 cut(s)	81
Alw21I	GWGCWC	1 cut(s)	83
AlwI	GGATC	2 cut(s)	21, 112
AoxI	GGCC	7 cut(s)	51, 61, 126, 157, 334, 365, 400
ApeKI	GCWGC	2 cut(s)	212, 244
AspS9I	GGNCC	2 cut(s)	365, 400
AsuHPI	GGTGA	1 cut(s)	16
BaeGI	GKGCMC	1 cut(s)	321
BanI	GGYRCC	1 cut(s)	316
BanII	GRGCYC	1 cut(s)	83
Bbv12I	GWGCWC	1 cut(s)	83
BbvI	GCAGC	2 cut(s)	199, 256
BccI	CCATC	3 cut(s)	115, 305, 379
BceAI	ACGGC	1 cut(s)	147
BciT130I	CCWGG	1 cut(s)	149
BcuI	ACTAGT	1 cut(s)	290
BfaI	CTAG	2 cut(s)	291, 378
BglII	AGATCT	1 cut(s)	255
BisI	GCNGC	7 cut(s)	126, 157, 213, 216, 226, 238, 245
BlsI	GCNGC	7 cut(s)	127, 158, 214, 217, 227, 239, 246
Bme1390I	CCNGG	1 cut(s)	149
BmgT120I	GGNCC	2 cut(s)	365, 400
BmiI	GGNNCC	1 cut(s)	318
BmrFI	CCNGG	1 cut(s)	149
BsaHI	GRCGYC	1 cut(s)	270
BsaJI	CCNNGG	1 cut(s)	129
Bsc4I	CCNNNNNNNGG	2 cut(s)	70, 90
Bse118I	RCCGGY	2 cut(s)	53, 266
BseBI	CCWGG	1 cut(s)	149
BseDI	CCNNGG	1 cut(s)	129
BseGI	GGATG	1 cut(s)	316
BseLI	CCNNNNNNNGG	2 cut(s)	70, 90
BseSI	GKGCMC	1 cut(s)	321
BseXI	GCAGC	2 cut(s)	199, 256
BshFI	GGCC	7 cut(s)	53, 63, 128, 159, 336, 367, 402
BshNI	GGYRCC	1 cut(s)	316
BsiHKAI	GWGCWC	1 cut(s)	83
BsiSI	CCGG	2 cut(s)	54, 267
BslFI	GGGAC	1 cut(s)	195
BslI	CCNNNNNNNGG	2 cut(s)	70, 90
BsmFI	GGGAC	1 cut(s)	195
BsnI	GGCC	7 cut(s)	53, 63, 128, 159, 336, 367, 402
Bsp1286I	GDGCHC	2 cut(s)	83, 321
Bsp143I	GATC	4 cut(s)	13, 43, 104, 255
BspACI	CCGC	7 cut(s)	88, 125, 156, 215, 225, 237, 286
BspANI	GGCC	7 cut(s)	53, 63, 128, 159, 336, 367, 402
BspLI	GGNNCC	1 cut(s)	318
BspPI	GGATC	2 cut(s)	21, 112
BspT107I	GGYRCC	1 cut(s)	316
BsrBI	CCGCTC	1 cut(s)	88
BsrFI	RCCGGY	2 cut(s)	53, 266
BssAI	RCCGGY	2 cut(s)	53, 266
BssECI	CCNNGG	1 cut(s)	129
BssMI	GATC	4 cut(s)	13, 43, 104, 255
BssNI	GRCGYC	1 cut(s)	270
Bst2UI	CCWGG	1 cut(s)	149
Bst4CI	ACNGT	1 cut(s)	186
BstACI	GRCGYC	1 cut(s)	270
BstC8I	GCNNGC	3 cut(s)	136, 154, 242
BstDEI	CTNAG	1 cut(s)	197
BstDSI	CCRYGG	1 cut(s)	129
BstF5I	GGATG	1 cut(s)	316
BstKTI	GATC	4 cut(s)	16, 46, 107, 258
BstMBI	GATC	4 cut(s)	13, 43, 104, 255
BstMWI	GCNNNNNNNGC	2 cut(s)	131, 234
BstNI	CCWGG	1 cut(s)	149
BstSCI	CCNGG	1 cut(s)	147
BstSLI	GKGCMC	1 cut(s)	321
BstV1I	GCAGC	2 cut(s)	199, 256
BstX2I	RGATCY	2 cut(s)	104, 255
BstXI	CCANNNNNNTGG	1 cut(s)	328
BstYI	RGATCY	2 cut(s)	104, 255
BsuRI	GGCC	7 cut(s)	53, 63, 128, 159, 336, 367, 402
BtgI	CCRYGG	1 cut(s)	129
BtsCI	GGATG	1 cut(s)	316
Cac8I	GCNNGC	3 cut(s)	136, 154, 242
Cfr10I	RCCGGY	2 cut(s)	53, 266
Cfr13I	GGNCC	2 cut(s)	365, 400
CseI	GACGC	1 cut(s)	259
DdeI	CTNAG	1 cut(s)	197
DpnI	GATC	4 cut(s)	15, 45, 106, 257
DpnII	GATC	4 cut(s)	13, 43, 104, 255
EaeI	YGGCCR	4 cut(s)	51, 61, 126, 157
EciI	GGCGGA	1 cut(s)	301
Ecl136II	GAGCTC	1 cut(s)	81
Eco24I	GRGCYC	1 cut(s)	83
Eco53kI	GAGCTC	1 cut(s)	81
EcoICRI	GAGCTC	1 cut(s)	81
EcoRII	CCWGG	1 cut(s)	147
EcoT38I	GRGCYC	1 cut(s)	83
FaiI	YATR	2 cut(s)	96, 446
FaqI	GGGAC	1 cut(s)	195
Fnu4HI	GCNGC	7 cut(s)	126, 157, 213, 216, 226, 238, 245
FokI	GGATG	1 cut(s)	323
FriOI	GRGCYC	1 cut(s)	83
Fsp4HI	GCNGC	7 cut(s)	126, 157, 213, 216, 226, 238, 245
FspBI	CTAG	2 cut(s)	291, 378
GluI	GCNGC	7 cut(s)	126, 157, 213, 216, 226, 238, 245
HaeIII	GGCC	7 cut(s)	53, 63, 128, 159, 336, 367, 402
HapII	CCGG	2 cut(s)	54, 267
HgaI	GACGC	1 cut(s)	259
Hin1I	GRCGYC	1 cut(s)	270
HincII	GTYRAC	2 cut(s)	26, 40
HindII	GTYRAC	2 cut(s)	26, 40
HinfI	GANTC	1 cut(s)	7
HpaII	CCGG	2 cut(s)	54, 267
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	2 cut(s)	26, 40
Hpy188I	TCNGA	2 cut(s)	85, 255
Hpy188III	TCNNGA	2 cut(s)	11, 108
Hpy8I	GTNNAC	2 cut(s)	26, 40
Hpy99I	CGWCG	1 cut(s)	275
HpyAV	CCTTC	1 cut(s)	272
HpyCH4III	ACNGT	1 cut(s)	186
HpyCH4IV	ACGT	1 cut(s)	31
HpyCH4V	TGCA	1 cut(s)	20
HpyF10VI	GCNNNNNNNGC	2 cut(s)	131, 234
HpyF3I	CTNAG	1 cut(s)	197
HpySE526I	ACGT	1 cut(s)	31
Hsp92I	GRCGYC	1 cut(s)	270
Kzo9I	GATC	4 cut(s)	13, 43, 104, 255
LmnI	GCTCC	2 cut(s)	78, 86
Lsp1109I	GCAGC	2 cut(s)	199, 256
MaeI	CTAG	2 cut(s)	291, 378
MaeII	ACGT	1 cut(s)	31
MalI	GATC	4 cut(s)	15, 45, 106, 257
MbiI	CCGCTC	1 cut(s)	88
MboI	GATC	4 cut(s)	13, 43, 104, 255
MboII	GAAGA	2 cut(s)	242, 250
MflI	RGATCY	2 cut(s)	104, 255
MhlI	GDGCHC	2 cut(s)	83, 321
MluCI	AATT	1 cut(s)	343
MmeI	TCCRAC	2 cut(s)	82, 288
MnlI	CCTC	4 cut(s)	64, 276, 347, 378
MspI	CCGG	2 cut(s)	54, 267
MspR9I	CCNGG	1 cut(s)	149
MvaI	CCWGG	1 cut(s)	149
MwoI	GCNNNNNNNGC	2 cut(s)	131, 234
NdeII	GATC	4 cut(s)	13, 43, 104, 255
NlaIV	GGNNCC	1 cut(s)	318
NmeAIII	GCCGAG	1 cut(s)	89
PfeI	GAWTC	1 cut(s)	7
PkrI	GCNGC	7 cut(s)	127, 158, 214, 217, 227, 239, 246
Psp124BI	GAGCTC	1 cut(s)	83
Psp1406I	AACGTT	1 cut(s)	31
Psp6I	CCWGG	1 cut(s)	147
PspGI	CCWGG	1 cut(s)	147
PspN4I	GGNNCC	1 cut(s)	318
PspPI	GGNCC	2 cut(s)	365, 400
PsuI	RGATCY	2 cut(s)	104, 255
SacI	GAGCTC	1 cut(s)	83
SatI	GCNGC	7 cut(s)	126, 157, 213, 216, 226, 238, 245
Sau3AI	GATC	4 cut(s)	13, 43, 104, 255
Sau96I	GGNCC	2 cut(s)	365, 400
ScrFI	CCNGG	1 cut(s)	149
SduI	GDGCHC	2 cut(s)	83, 321
SetI	ASST	4 cut(s)	34, 83, 150, 203
SpeI	ACTAGT	1 cut(s)	290
Sse9I	AATT	1 cut(s)	343
SsiI	CCGC	7 cut(s)	88, 125, 156, 215, 225, 237, 286
SspMI	CTAG	2 cut(s)	291, 378
SstI	GAGCTC	1 cut(s)	83
StyD4I	CCNGG	1 cut(s)	147
TaaI	ACNGT	1 cut(s)	186
TaiI	ACGT	1 cut(s)	34
TaqI	TCGA	1 cut(s)	109
TasI	AATT	1 cut(s)	343
TauI	GCSGC	5 cut(s)	128, 159, 218, 228, 240
TfiI	GAWTC	1 cut(s)	7
TseI	GCWGC	2 cut(s)	212, 244
XspI	CTAG	2 cut(s)	291, 378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.