Rorug05G0210700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0001534
Physical Location & Seq
Reverse (-)
21608041 .. 21611778
3738 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0210700.1

Sequence Viewer

Length: 1002 bp
ATGTCTCTCTTCAGAACCCTCCTTTCCCACTCCTCTCTCCTTAAACCCCAAAACCCTCTCTTCATTTCCCAAACAACCCACCAACCTCTCTCATTCTCCTCCATCTTCCTCAGAACCCTTTCCTCACTCGAACCCAAAAACCAAACCAAACCCAGAAAGCCTCTAGACCTTGTTTTCAAAAAGGCCGTCGGACTTTCCCCAGAACCCGAAACCTCCGATACCGAAACCGACGACGACCCACTGAAACAGAGCCTAAGAGAGCTAGAACAAGAGCTCAAGGGCGTGAAATCGAATCCGAATGTCGCCCAAATCAAACCCAGGAAAAGAGAACCCCAGAATTCAAAGAGAGGGATCAGCTTATACGCAGTGTTTACGAATAAGACGGTGGACGGTGAAACGGGGAAGGAGATGACCAGAGAGAGGTCGGACGTGTGTAAAGAGTTGTCGCCGGAAATGGAGTTGGTGGTGAGCTATTTGGATAAAGAAGGCTACTTTTCGAATGCCAATTTCCTGTCTTTGTATGAGGATAGGTTGGACTTTAGTTGCTTTGATAATAGCTATGGCCGCGGGTTTATTAAGCATGCTGTGGAGAAGTTTGCCAAGGACAAGCAGCAAATTGCAAAATGGTTATCAGGGAGCAACTTGAAAAAGGTGGCTCTCTTTGGTTGTCCTTCGCTTGCAAAAAAGAGTGTTTTTGGTGCTAAAAGATTGCGCAAATTCTTTGAAATTCCAGAAGAAACTGTTTGTTCAAAATGTGTCTTAAGAGAATCGTGCAGGTTTGTGAACAAGAGTGTGTGGCGTGGAGCCACAAAGAATTTGAATCCGACTAATAATGTGGGGAAAGGAAACCCCAAGAATTTGAACCTGGCTGATGTTATGAATATTATCACGCTATATGCTTTGGAATCTGTGCCTCCGCAGCTGGTTGTGCCAGATGATTTAAAGGCTTCTGTTAGTCGATTGCTAAAGGAGATTTTGAAGCTAAGTCAAACTACTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

333

Amino Acids

37.52

Weight (kDa)

9.42

Isoelectric Point (pI)

35.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 713
Acc36I ACCTGC 1 cut(s) 765
AccII CGCG 1 cut(s) 567
AciI CCGC 3 cut(s) 565, 567, 917
AclWI GGATC 1 cut(s) 359
AcoI YGGCCR 1 cut(s) 562
AcsI RAATTY 5 cut(s) 337, 716, 726, 814, 856
AfiI CCNNNNNNNGG 1 cut(s) 420
AflII CTTAAG 1 cut(s) 760
AflIII ACRYGT 1 cut(s) 429
AgsI TTSAA 8 cut(s) 178, 342, 646, 725, 750, 820, 862, 979
AjiI CACGTC 1 cut(s) 430
AjnI CCWGG 2 cut(s) 317, 864
AluBI AGCT 7 cut(s) 262, 274, 357, 471, 558, 922, 982
AluI AGCT 7 cut(s) 262, 274, 357, 471, 558, 922, 982
Alw21I GWGCWC 1 cut(s) 276
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 1 cut(s) 359
AoxI GGCC 2 cut(s) 183, 562
ApeKI GCWGC 2 cut(s) 610, 919
ApoI RAATTY 5 cut(s) 337, 716, 726, 814, 856
ArsI GACNNNNNNTTYG 2 cut(s) 171, 203
Asp700I GAANNNNTTC 1 cut(s) 118
AspLEI GCGC 1 cut(s) 714
AsuHPI GGTGA 2 cut(s) 404, 478
AsuII TTCGAA 1 cut(s) 497
BanII GRGCYC 1 cut(s) 276
Bbv12I GWGCWC 1 cut(s) 276
BbvI GCAGC 2 cut(s) 622, 931
BccI CCATC 1 cut(s) 110
BceAI ACGGC 1 cut(s) 170
BciT130I CCWGG 2 cut(s) 319, 866
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 2 cut(s) 164, 263
BfrI CTTAAG 1 cut(s) 760
BfuAI ACCTGC 1 cut(s) 765
BisI GCNGC 3 cut(s) 565, 611, 920
BlsI GCNGC 3 cut(s) 566, 612, 921
Bme1390I CCNGG 2 cut(s) 319, 866
BmgBI CACGTC 1 cut(s) 430
BmiI GGNNCC 1 cut(s) 805
BmrFI CCNGG 2 cut(s) 319, 866
Bpu14I TTCGAA 1 cut(s) 497
BpuEI CTTGAG 1 cut(s) 260
BsaJI CCNNGG 3 cut(s) 317, 565, 600
Bsc4I CCNNNNNNNGG 1 cut(s) 420
BseBI CCWGG 2 cut(s) 319, 866
BseDI CCNNGG 3 cut(s) 317, 565, 600
BseLI CCNNNNNNNGG 1 cut(s) 420
BseMII CTCAG 1 cut(s) 124
BseRI GAGGAG 2 cut(s) 22, 88
BseXI GCAGC 2 cut(s) 622, 931
BsgI GTGCAG 1 cut(s) 793
Bsh1236I CGCG 1 cut(s) 567
BshFI GGCC 2 cut(s) 185, 564
BsiHKAI GWGCWC 1 cut(s) 276
BsiSI CCGG 1 cut(s) 449
BslI CCNNNNNNNGG 1 cut(s) 420
BsmAI GTCTC 1 cut(s) 9
BsmI GAATGC 1 cut(s) 505
BsnI GGCC 2 cut(s) 185, 564
Bsp119I TTCGAA 1 cut(s) 497
Bsp1286I GDGCHC 1 cut(s) 276
Bsp143I GATC 1 cut(s) 351
BspACI CCGC 3 cut(s) 565, 567, 917
BspANI GGCC 2 cut(s) 185, 564
BspCNI CTCAG 1 cut(s) 123
BspFNI CGCG 1 cut(s) 567
BspHI TCATGA 1 cut(s) 998
BspLI GGNNCC 1 cut(s) 805
BspMI ACCTGC 1 cut(s) 765
BspPI GGATC 1 cut(s) 359
BspT104I TTCGAA 1 cut(s) 497
BspTI CTTAAG 1 cut(s) 760
BssECI CCNNGG 3 cut(s) 317, 565, 600
BssMI GATC 1 cut(s) 351
BssT1I CCWWGG 1 cut(s) 600
Bst2UI CCWGG 2 cut(s) 319, 866
Bst4CI ACNGT 3 cut(s) 385, 392, 742
Bst6I CTCTTC 2 cut(s) 14, 65
BstAFI CTTAAG 1 cut(s) 760
BstBI TTCGAA 1 cut(s) 497
BstC8I GCNNGC 2 cut(s) 582, 678
BstDEI CTNAG 3 cut(s) 110, 254, 983
BstDSI CCRYGG 1 cut(s) 565
BstFNI CGCG 1 cut(s) 567
BstHHI GCGC 1 cut(s) 714
BstKTI GATC 1 cut(s) 354
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 1 cut(s) 351
BstMWI GCNNNNNNNGC 3 cut(s) 564, 919, 928
BstNI CCWGG 2 cut(s) 319, 866
BstNSI RCATGY 1 cut(s) 584
BstSCI CCNGG 2 cut(s) 317, 864
BstUI CGCG 1 cut(s) 567
BstV1I GCAGC 2 cut(s) 622, 931
BsuRI GGCC 2 cut(s) 185, 564
BtgI CCRYGG 1 cut(s) 565
BtrI CACGTC 1 cut(s) 430
BtsI GCAGTG 1 cut(s) 372
BtsIMutI CAGTG 2 cut(s) 239, 372
BveI ACCTGC 1 cut(s) 765
Cac8I GCNNGC 2 cut(s) 582, 678
CciI TCATGA 1 cut(s) 998
CfoI GCGC 1 cut(s) 714
Cfr42I CCGCGG 1 cut(s) 568
CviAII CATG 2 cut(s) 581, 999
DdeI CTNAG 3 cut(s) 110, 254, 983
DpnI GATC 1 cut(s) 353
DpnII GATC 1 cut(s) 351
DraI TTTAAA 1 cut(s) 942
EaeI YGGCCR 1 cut(s) 562
Eam1104I CTCTTC 2 cut(s) 14, 65
EarI CTCTTC 2 cut(s) 14, 65
Ecl136II GAGCTC 1 cut(s) 274
Eco130I CCWWGG 1 cut(s) 600
Eco24I GRGCYC 1 cut(s) 276
Eco53kI GAGCTC 1 cut(s) 274
EcoICRI GAGCTC 1 cut(s) 274
EcoRI GAATTC 1 cut(s) 337
EcoRII CCWGG 2 cut(s) 317, 864
EcoT14I CCWWGG 1 cut(s) 600
EcoT38I GRGCYC 1 cut(s) 276
ErhI CCWWGG 1 cut(s) 600
FaeI CATG 2 cut(s) 584, 1002
FaiI YATR 8 cut(s) 361, 522, 561, 582, 878, 895, 897, 1000
FatI CATG 2 cut(s) 580, 998
FauI CCCGC 1 cut(s) 560
Fnu4HI GCNGC 3 cut(s) 565, 611, 920
FriOI GRGCYC 1 cut(s) 276
Fsp4HI GCNGC 3 cut(s) 565, 611, 920
FspBI CTAG 2 cut(s) 164, 263
FspI TGCGCA 1 cut(s) 713
GlaI GCGC 1 cut(s) 713
GluI GCNGC 3 cut(s) 565, 611, 920
HaeIII GGCC 2 cut(s) 185, 564
HapII CCGG 1 cut(s) 449
HhaI GCGC 1 cut(s) 714
Hin1II CATG 2 cut(s) 584, 1002
Hin6I GCGC 1 cut(s) 712
HinP1I GCGC 1 cut(s) 712
HinfI GANTC 4 cut(s) 292, 767, 820, 905
HpaII CCGG 1 cut(s) 449
HphI GGTGA 2 cut(s) 404, 478
Hpy166II GTNNAC 3 cut(s) 372, 388, 784
Hpy188I TCNGA 7 cut(s) 14, 113, 191, 217, 297, 427, 825
Hpy188III TCNNGA 3 cut(s) 164, 731, 999
Hpy8I GTNNAC 3 cut(s) 372, 388, 784
Hpy99I CGWCG 3 cut(s) 191, 233, 236
HpyAV CCTTC 3 cut(s) 397, 479, 681
HpyCH4III ACNGT 3 cut(s) 385, 392, 742
HpyCH4IV ACGT 1 cut(s) 429
HpyCH4V TGCA 3 cut(s) 620, 680, 774
HpyF10VI GCNNNNNNNGC 3 cut(s) 564, 919, 928
HpyF3I CTNAG 3 cut(s) 110, 254, 983
HpySE526I ACGT 1 cut(s) 429
Hsp92II CATG 2 cut(s) 584, 1002
HspAI GCGC 1 cut(s) 712
KspI CCGCGG 1 cut(s) 568
Kzo9I GATC 1 cut(s) 351
LmnI GCTCC 2 cut(s) 636, 803
Lsp1109I GCAGC 2 cut(s) 622, 931
MaeI CTAG 2 cut(s) 164, 263
MaeII ACGT 1 cut(s) 429
MalI GATC 1 cut(s) 353
MboI GATC 1 cut(s) 351
MboII GAAGA 3 cut(s) 52, 97, 746
MhlI GDGCHC 1 cut(s) 276
MluCI AATT 7 cut(s) 337, 505, 615, 716, 726, 814, 856
MmeI TCCRAC 4 cut(s) 169, 405, 513, 848
MroXI GAANNNNTTC 1 cut(s) 118
MseI TTAA 4 cut(s) 42, 576, 761, 941
MspA1I CMGCKG 2 cut(s) 567, 922
MspCI CTTAAG 1 cut(s) 760
MspI CCGG 1 cut(s) 449
MspR9I CCNGG 2 cut(s) 319, 866
Mva1269I GAATGC 1 cut(s) 505
MvaI CCWGG 2 cut(s) 319, 866
MvnI CGCG 1 cut(s) 567
MwoI GCNNNNNNNGC 3 cut(s) 564, 919, 928
NdeII GATC 1 cut(s) 351
NlaIII CATG 2 cut(s) 584, 1002
NlaIV GGNNCC 1 cut(s) 805
NsbI TGCGCA 1 cut(s) 713
NspI RCATGY 1 cut(s) 584
NspV TTCGAA 1 cut(s) 497
PaeI GCATGC 1 cut(s) 584
PagI TCATGA 1 cut(s) 998
PctI GAATGC 1 cut(s) 505
PdmI GAANNNNTTC 1 cut(s) 118
PfeI GAWTC 4 cut(s) 292, 767, 820, 905
PkrI GCNGC 3 cut(s) 566, 612, 921
Psp124BI GAGCTC 1 cut(s) 276
Psp6I CCWGG 2 cut(s) 317, 864
PspGI CCWGG 2 cut(s) 317, 864
PspN4I GGNNCC 1 cut(s) 805
PvuII CAGCTG 1 cut(s) 922
SacI GAGCTC 1 cut(s) 276
SacII CCGCGG 1 cut(s) 568
SaqAI TTAA 4 cut(s) 42, 576, 761, 941
SatI GCNGC 3 cut(s) 565, 611, 920
Sau3AI GATC 1 cut(s) 351
ScrFI CCNGG 2 cut(s) 319, 866
SduI GDGCHC 1 cut(s) 276
Sfr303I CCGCGG 1 cut(s) 568
SfuI TTCGAA 1 cut(s) 497
SgrBI CCGCGG 1 cut(s) 568
SmlI CTYRAG 2 cut(s) 275, 760
SmoI CTYRAG 2 cut(s) 275, 760
SphI GCATGC 1 cut(s) 584
Sse9I AATT 7 cut(s) 337, 505, 615, 716, 726, 814, 856
SsiI CCGC 3 cut(s) 565, 567, 917
SspI AATATT 1 cut(s) 883
SspMI CTAG 2 cut(s) 164, 263
SstI GAGCTC 1 cut(s) 276
StyD4I CCNGG 2 cut(s) 317, 864
StyI CCWWGG 1 cut(s) 600
TaaI ACNGT 3 cut(s) 385, 392, 742
TaiI ACGT 1 cut(s) 432
TaqI TCGA 4 cut(s) 129, 290, 497, 958
TasI AATT 7 cut(s) 337, 505, 615, 716, 726, 814, 856
TauI GCSGC 1 cut(s) 567
TfiI GAWTC 4 cut(s) 292, 767, 820, 905
Tru1I TTAA 4 cut(s) 42, 576, 761, 941
Tru9I TTAA 4 cut(s) 42, 576, 761, 941
TscAI CASTG 2 cut(s) 246, 372
TseI GCWGC 2 cut(s) 610, 919
TspDTI ATGAA 3 cut(s) 52, 893, 987
TspRI CASTG 2 cut(s) 246, 372
Vha464I CTTAAG 1 cut(s) 760
XapI RAATTY 5 cut(s) 337, 716, 726, 814, 856
XbaI TCTAGA 1 cut(s) 163
XceI RCATGY 1 cut(s) 584
XmnI GAANNNNTTC 1 cut(s) 118
XspI CTAG 2 cut(s) 164, 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.