Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 22 - 193 | 4.2e-54 | TIR domain |
| TIR_2 | PF13676 | 24 - 119 | 5.4e-15 | TIR domain |
| NB-ARC | PF00931 | 208 - 376 | 2e-18 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 447 - 516 | 3e-16 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 698 - 790 | 3.9e-10 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 705 - 788 | 7.3e-10 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_13 | PF23286 | 846 - 933 | 8.4e-06 | Disease resistance protein RPS4B-like, leucine-rich repeats |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 1269, 1721, 3429 |
| Acc36I | ACCTGC | 1 cut(s) | 770 |
| AccBSI | CCGCTC | 1 cut(s) | 2679 |
| AccI | GTMKAC | 2 cut(s) | 1231, 1547 |
| AccII | CGCG | 1 cut(s) | 2564 |
| AciI | CCGC | 6 cut(s) | 1420, 1774, 1799, 1864, 2209, 2679 |
| AclWI | GGATC | 7 cut(s) | 155, 1046, 1995, 2028, 2041, 2106, 2673 |
| AcoI | YGGCCR | 2 cut(s) | 3, 335 |
| AcuI | CTGAAG | 2 cut(s) | 1087, 2412 |
| AcyI | GRCGYC | 1 cut(s) | 3320 |
| AdeI | CACNNNGTG | 1 cut(s) | 70 |
| AfaI | GTAC | 4 cut(s) | 574, 621, 663, 1165 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 273, 2043, 2513, 3190, 3462 |
| AflII | CTTAAG | 1 cut(s) | 2659 |
| AflIII | ACRYGT | 1 cut(s) | 3287 |
| AjnI | CCWGG | 4 cut(s) | 1067, 1200, 1983, 3412 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 116, 148 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 428, 460 |
| Alw21I | GWGCWC | 2 cut(s) | 976, 1101 |
| Alw26I | GTCTC | 2 cut(s) | 2440, 2833 |
| AlwI | GGATC | 7 cut(s) | 155, 1046, 1995, 2028, 2041, 2106, 2673 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2486 |
| Ama87I | CYCGRG | 1 cut(s) | 615 |
| AoxI | GGCC | 5 cut(s) | 3, 335, 491, 1065, 1186 |
| ApeKI | GCWGC | 7 cut(s) | 458, 473, 756, 996, 2307, 2682, 3223 |
| AseI | ATTAAT | 1 cut(s) | 2127 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 204, 291, 2397, 3036 |
| AspLEI | GCGC | 2 cut(s) | 1465, 2503 |
| AspS9I | GGNCC | 4 cut(s) | 492, 949, 3207, 3340 |
| AsuC2I | CCSGG | 1 cut(s) | 1557 |
| AsuHPI | GGTGA | 6 cut(s) | 404, 440, 1571, 2528, 3138, 3428 |
| AvaI | CYCGRG | 1 cut(s) | 615 |
| AvaII | GGWCC | 3 cut(s) | 949, 3207, 3340 |
| BamHI | GGATCC | 1 cut(s) | 2033 |
| BanII | GRGCYC | 2 cut(s) | 1101, 1557 |
| BbsI | GAAGAC | 2 cut(s) | 707, 3372 |
| Bbv12I | GWGCWC | 2 cut(s) | 976, 1101 |
| BbvI | GCAGC | 7 cut(s) | 470, 485, 743, 1008, 2319, 2669, 3210 |
| BccI | CCATC | 7 cut(s) | 444, 1256, 1313, 1513, 2377, 2812, 2857 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1753, 1787, 2674, 2708 |
| BciT130I | CCWGG | 4 cut(s) | 1069, 1202, 1985, 3414 |
| BciVI | GTATCC | 2 cut(s) | 88, 3150 |
| BcnI | CCSGG | 1 cut(s) | 1557 |
| BcoDI | GTCTC | 2 cut(s) | 2440, 2833 |
| BfaI | CTAG | 7 cut(s) | 839, 1076, 1406, 1511, 1940, 2204, 2513 |
| BfmI | CTRYAG | 5 cut(s) | 1236, 1548, 1656, 2321, 3224 |
| BfoI | RGCGCY | 2 cut(s) | 1466, 2504 |
| BfrI | CTTAAG | 1 cut(s) | 2659 |
| BfuAI | ACCTGC | 1 cut(s) | 770 |
| BfuI | GTATCC | 2 cut(s) | 88, 3150 |
| BisI | GCNGC | 9 cut(s) | 459, 474, 757, 997, 1864, 2308, 2680, 2683, 3224 |
| BlsI | GCNGC | 9 cut(s) | 460, 475, 758, 998, 1865, 2309, 2681, 2684, 3225 |
| Bme1390I | CCNGG | 5 cut(s) | 1069, 1202, 1557, 1985, 3414 |
| Bme18I | GGWCC | 3 cut(s) | 949, 3207, 3340 |
| BmeT110I | CYCGRG | 1 cut(s) | 615 |
| BmgT120I | GGNCC | 4 cut(s) | 492, 949, 3207, 3340 |
| BmiI | GGNNCC | 4 cut(s) | 2035, 2970, 3208, 3341 |
| BmrFI | CCNGG | 5 cut(s) | 1069, 1202, 1557, 1985, 3414 |
| BpiI | GAAGAC | 2 cut(s) | 707, 3372 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1287, 1319, 2057, 2089 |
| BpmI | CTGGAG | 1 cut(s) | 2128 |
| BpuEI | CTTGAG | 3 cut(s) | 1167, 1696, 2084 |
| BpuMI | CCSGG | 1 cut(s) | 1557 |
| BsaAI | YACGTR | 1 cut(s) | 3288 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1758, 2895 |
| BsaHI | GRCGYC | 1 cut(s) | 3320 |
| BsaJI | CCNNGG | 4 cut(s) | 1068, 1200, 2507, 3011 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 789, 819, 2830, 2860 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 273, 2043, 2513, 3190, 3462 |
| Bse1I | ACTGG | 8 cut(s) | 294, 599, 952, 1250, 1329, 2111, 2218, 2951 |
| Bse3DI | GCAATG | 4 cut(s) | 1356, 2137, 2225, 3272 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1758, 2895 |
| BseBI | CCWGG | 4 cut(s) | 1069, 1202, 1985, 3414 |
| BseDI | CCNNGG | 4 cut(s) | 1068, 1200, 2507, 3011 |
| BseJI | GATNNNNATC | 2 cut(s) | 1758, 2895 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 273, 2043, 2513, 3190, 3462 |
| BseMI | GCAATG | 4 cut(s) | 1356, 2137, 2225, 3272 |
| BseMII | CTCAG | 3 cut(s) | 68, 1838, 2936 |
| BseNI | ACTGG | 8 cut(s) | 294, 599, 952, 1250, 1329, 2111, 2218, 2951 |
| BseRI | GAGGAG | 3 cut(s) | 25, 198, 3170 |
| BseXI | GCAGC | 7 cut(s) | 470, 485, 743, 1008, 2319, 2669, 3210 |
| BsgI | GTGCAG | 3 cut(s) | 540, 2668, 3411 |
| Bsh1236I | CGCG | 1 cut(s) | 2564 |
| BshFI | GGCC | 5 cut(s) | 5, 337, 493, 1067, 1188 |
| BsiHKAI | GWGCWC | 2 cut(s) | 976, 1101 |
| BsiHKCI | CYCGRG | 1 cut(s) | 615 |
| BsiSI | CCGG | 3 cut(s) | 969, 1557, 2836 |
| BslFI | GGGAC | 4 cut(s) | 2551, 2598, 3068, 3438 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 273, 2043, 2513, 3190, 3462 |
| BsmAI | GTCTC | 2 cut(s) | 2440, 2833 |
| BsmBI | CGTCTC | 1 cut(s) | 2440 |
| BsmFI | GGGAC | 4 cut(s) | 2551, 2598, 3068, 3438 |
| BsmI | GAATGC | 1 cut(s) | 2639 |
| BsnI | GGCC | 5 cut(s) | 5, 337, 493, 1067, 1188 |
| BsoBI | CYCGRG | 1 cut(s) | 615 |
| Bsp1286I | GDGCHC | 3 cut(s) | 976, 1101, 1557 |
| Bsp143I | GATC | 9 cut(s) | 147, 314, 1051, 1987, 2033, 2111, 2665, 2896, 3211 |
| BspACI | CCGC | 6 cut(s) | 1420, 1774, 1799, 1864, 2209, 2679 |
| BspANI | GGCC | 5 cut(s) | 5, 337, 493, 1067, 1188 |
| BspCNI | CTCAG | 3 cut(s) | 69, 1839, 2935 |
| BspFNI | CGCG | 1 cut(s) | 2564 |
| BspLI | GGNNCC | 4 cut(s) | 2035, 2970, 3208, 3341 |
| BspMAI | CTGCAG | 2 cut(s) | 2325, 3228 |
| BspMI | ACCTGC | 1 cut(s) | 770 |
| BspPI | GGATC | 7 cut(s) | 155, 1046, 1995, 2028, 2041, 2106, 2673 |
| BspQI | GCTCTTC | 1 cut(s) | 1106 |
| BspTI | CTTAAG | 1 cut(s) | 2659 |
| BsrBI | CCGCTC | 1 cut(s) | 2679 |
| BsrDI | GCAATG | 4 cut(s) | 1356, 2137, 2225, 3272 |
| BsrI | ACTGG | 8 cut(s) | 294, 599, 952, 1250, 1329, 2111, 2218, 2951 |
| BssECI | CCNNGG | 4 cut(s) | 1068, 1200, 2507, 3011 |
| BssMI | GATC | 9 cut(s) | 147, 314, 1051, 1987, 2033, 2111, 2665, 2896, 3211 |
| BssNI | GRCGYC | 1 cut(s) | 3320 |
| BssT1I | CCWWGG | 1 cut(s) | 2507 |
| Bst2UI | CCWGG | 4 cut(s) | 1069, 1202, 1985, 3414 |
| Bst4CI | ACNGT | 8 cut(s) | 107, 1039, 1168, 1737, 1796, 2576, 3015, 3162 |
| Bst6I | CTCTTC | 4 cut(s) | 540, 1106, 1509, 2906 |
| BstACI | GRCGYC | 1 cut(s) | 3320 |
| BstAFI | CTTAAG | 1 cut(s) | 2659 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1507 |
| BstBAI | YACGTR | 1 cut(s) | 3288 |
| BstC8I | GCNNGC | 2 cut(s) | 1499, 2209 |
| BstDEI | CTNAG | 6 cut(s) | 77, 1156, 1847, 1975, 1991, 2922 |
| BstDSI | CCRYGG | 1 cut(s) | 3011 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2511 |
| BstFNI | CGCG | 1 cut(s) | 2564 |
| BstH2I | RGCGCY | 2 cut(s) | 1466, 2504 |
| BstHHI | GCGC | 2 cut(s) | 1465, 2503 |
| BstKTI | GATC | 9 cut(s) | 150, 317, 1054, 1990, 2036, 2114, 2668, 2899, 3214 |
| BstMAI | GTCTC | 2 cut(s) | 2440, 2833 |
| BstMBI | GATC | 9 cut(s) | 147, 314, 1051, 1987, 2033, 2111, 2665, 2896, 3211 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 499, 1507, 1561, 2509, 3274 |
| BstNI | CCWGG | 4 cut(s) | 1069, 1202, 1985, 3414 |
| BstNSI | RCATGY | 2 cut(s) | 631, 1501 |
| BstSCI | CCNGG | 5 cut(s) | 1067, 1200, 1555, 1983, 3412 |
| BstSFI | CTRYAG | 5 cut(s) | 1236, 1548, 1656, 2321, 3224 |
| BstUI | CGCG | 1 cut(s) | 2564 |
| BstV1I | GCAGC | 7 cut(s) | 470, 485, 743, 1008, 2319, 2669, 3210 |
| BstV2I | GAAGAC | 2 cut(s) | 707, 3372 |
| BstX2I | RGATCY | 4 cut(s) | 1987, 2033, 2111, 2665 |
| BstYI | RGATCY | 4 cut(s) | 1987, 2033, 2111, 2665 |
| BsuI | GTATCC | 2 cut(s) | 88, 3150 |
| BsuRI | GGCC | 5 cut(s) | 5, 337, 493, 1067, 1188 |
| BtgI | CCRYGG | 1 cut(s) | 3011 |
| BtsIMutI | CAGTG | 3 cut(s) | 2211, 2484, 3356 |
| BveI | ACCTGC | 1 cut(s) | 770 |
| Cac8I | GCNNGC | 2 cut(s) | 1499, 2209 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2486 |
| CfoI | GCGC | 2 cut(s) | 1465, 2503 |
| Cfr13I | GGNCC | 4 cut(s) | 492, 949, 3207, 3340 |
| CseI | GACGC | 4 cut(s) | 881, 2553, 3257, 3309 |
| Csp6I | GTAC | 4 cut(s) | 573, 620, 662, 1164 |
| CviQI | GTAC | 4 cut(s) | 573, 620, 662, 1164 |
| DdeI | CTNAG | 6 cut(s) | 77, 1156, 1847, 1975, 1991, 2922 |
| DpnI | GATC | 9 cut(s) | 149, 316, 1053, 1989, 2035, 2113, 2667, 2898, 3213 |
| DpnII | GATC | 9 cut(s) | 147, 314, 1051, 1987, 2033, 2111, 2665, 2896, 3211 |
| DraIII | CACNNNGTG | 1 cut(s) | 70 |
| EaeI | YGGCCR | 2 cut(s) | 3, 335 |
| Eam1104I | CTCTTC | 4 cut(s) | 540, 1106, 1509, 2906 |
| EarI | CTCTTC | 4 cut(s) | 540, 1106, 1509, 2906 |
| Ecl136II | GAGCTC | 1 cut(s) | 1099 |
| Eco130I | CCWWGG | 1 cut(s) | 2507 |
| Eco147I | AGGCCT | 1 cut(s) | 1188 |
| Eco24I | GRGCYC | 2 cut(s) | 1101, 1557 |
| Eco32I | GATATC | 1 cut(s) | 2246 |
| Eco47I | GGWCC | 3 cut(s) | 949, 3207, 3340 |
| Eco53kI | GAGCTC | 1 cut(s) | 1099 |
| Eco57I | CTGAAG | 2 cut(s) | 1087, 2412 |
| Eco88I | CYCGRG | 1 cut(s) | 615 |
| EcoICRI | GAGCTC | 1 cut(s) | 1099 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2511 |
| EcoRI | GAATTC | 4 cut(s) | 1886, 2489, 2519, 2555 |
| EcoRII | CCWGG | 4 cut(s) | 1067, 1200, 1983, 3412 |
| EcoRV | GATATC | 1 cut(s) | 2246 |
| EcoT14I | CCWWGG | 1 cut(s) | 2507 |
| EcoT22I | ATGCAT | 2 cut(s) | 1503, 2639 |
| EcoT38I | GRGCYC | 2 cut(s) | 1101, 1557 |
| ErhI | CCWWGG | 1 cut(s) | 2507 |
| Esp3I | CGTCTC | 1 cut(s) | 2440 |
| FaqI | GGGAC | 4 cut(s) | 2551, 2598, 3068, 3438 |
| FauI | CCCGC | 1 cut(s) | 2216 |
| FblI | GTMKAC | 2 cut(s) | 1231, 1547 |
| Fnu4HI | GCNGC | 9 cut(s) | 459, 474, 757, 997, 1864, 2308, 2680, 2683, 3224 |
| FriOI | GRGCYC | 2 cut(s) | 1101, 1557 |
| Fsp4HI | GCNGC | 9 cut(s) | 459, 474, 757, 997, 1864, 2308, 2680, 2683, 3224 |
| FspBI | CTAG | 7 cut(s) | 839, 1076, 1406, 1511, 1940, 2204, 2513 |
| GlaI | GCGC | 2 cut(s) | 1464, 2502 |
| GluI | GCNGC | 9 cut(s) | 459, 474, 757, 997, 1864, 2308, 2680, 2683, 3224 |
| GsuI | CTGGAG | 1 cut(s) | 2128 |
| HaeII | RGCGCY | 2 cut(s) | 1466, 2504 |
| HaeIII | GGCC | 5 cut(s) | 5, 337, 493, 1067, 1188 |
| HapII | CCGG | 3 cut(s) | 969, 1557, 2836 |
| HgaI | GACGC | 4 cut(s) | 881, 2553, 3257, 3309 |
| HhaI | GCGC | 2 cut(s) | 1465, 2503 |
| Hin1I | GRCGYC | 1 cut(s) | 3320 |
| Hin6I | GCGC | 2 cut(s) | 1463, 2501 |
| HinP1I | GCGC | 2 cut(s) | 1463, 2501 |
| HincII | GTYRAC | 4 cut(s) | 808, 1035, 2104, 2656 |
| HindII | GTYRAC | 4 cut(s) | 808, 1035, 2104, 2656 |
| HpaII | CCGG | 3 cut(s) | 969, 1557, 2836 |
| HphI | GGTGA | 6 cut(s) | 404, 440, 1571, 2528, 3138, 3428 |
| HpyCH4III | ACNGT | 8 cut(s) | 107, 1039, 1168, 1737, 1796, 2576, 3015, 3162 |
| HpyCH4IV | ACGT | 5 cut(s) | 571, 1873, 2289, 3287, 3369 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 499, 1507, 1561, 2509, 3274 |
| HpyF3I | CTNAG | 6 cut(s) | 77, 1156, 1847, 1975, 1991, 2922 |
| HpySE526I | ACGT | 5 cut(s) | 571, 1873, 2289, 3287, 3369 |
| Hsp92I | GRCGYC | 1 cut(s) | 3320 |
| HspAI | GCGC | 2 cut(s) | 1463, 2501 |
| Kzo9I | GATC | 9 cut(s) | 147, 314, 1051, 1987, 2033, 2111, 2665, 2896, 3211 |
| LguI | GCTCTTC | 1 cut(s) | 1106 |
| LmnI | GCTCC | 2 cut(s) | 971, 2788 |
| Lsp1109I | GCAGC | 7 cut(s) | 470, 485, 743, 1008, 2319, 2669, 3210 |
| MaeI | CTAG | 7 cut(s) | 839, 1076, 1406, 1511, 1940, 2204, 2513 |
| MaeII | ACGT | 5 cut(s) | 571, 1873, 2289, 3287, 3369 |
| MaeIII | GTNAC | 6 cut(s) | 1415, 1776, 1790, 2290, 2365, 2578 |
| MalI | GATC | 9 cut(s) | 149, 316, 1053, 1989, 2035, 2113, 2667, 2898, 3213 |
| MbiI | CCGCTC | 1 cut(s) | 2679 |
| MboI | GATC | 9 cut(s) | 147, 314, 1051, 1987, 2033, 2111, 2665, 2896, 3211 |
| MfeI | CAATTG | 4 cut(s) | 11, 216, 708, 732 |
| MflI | RGATCY | 4 cut(s) | 1987, 2033, 2111, 2665 |
| MhlI | GDGCHC | 3 cut(s) | 976, 1101, 1557 |
| MlyI | GAGTC | 8 cut(s) | 605, 1553, 1687, 2381, 2420, 2835, 2904, 3303 |
| MmeI | TCCRAC | 5 cut(s) | 2011, 2130, 2247, 2426, 2712 |
| Mph1103I | ATGCAT | 2 cut(s) | 1503, 2639 |
| MroXI | GAANNNNTTC | 4 cut(s) | 204, 291, 2397, 3036 |
| MslI | CAYNNNNRTG | 5 cut(s) | 513, 1224, 1587, 3129, 3414 |
| MspA1I | CMGCKG | 1 cut(s) | 2985 |
| MspCI | CTTAAG | 1 cut(s) | 2659 |
| MspI | CCGG | 3 cut(s) | 969, 1557, 2836 |
| MspR9I | CCNGG | 5 cut(s) | 1069, 1202, 1557, 1985, 3414 |
| MunI | CAATTG | 4 cut(s) | 11, 216, 708, 732 |
| Mva1269I | GAATGC | 1 cut(s) | 2639 |
| MvaI | CCWGG | 4 cut(s) | 1069, 1202, 1985, 3414 |
| MvnI | CGCG | 1 cut(s) | 2564 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 499, 1507, 1561, 2509, 3274 |
| NciI | CCSGG | 1 cut(s) | 1557 |
| NdeII | GATC | 9 cut(s) | 147, 314, 1051, 1987, 2033, 2111, 2665, 2896, 3211 |
| NlaIV | GGNNCC | 4 cut(s) | 2035, 2970, 3208, 3341 |
| NmuCI | GTSAC | 2 cut(s) | 1415, 2290 |
| NsiI | ATGCAT | 2 cut(s) | 1503, 2639 |
| NspI | RCATGY | 2 cut(s) | 631, 1501 |
| PaeI | GCATGC | 1 cut(s) | 1501 |
| PceI | AGGCCT | 1 cut(s) | 1188 |
| PciSI | GCTCTTC | 1 cut(s) | 1106 |
| PctI | GAATGC | 1 cut(s) | 2639 |
| PdmI | GAANNNNTTC | 4 cut(s) | 204, 291, 2397, 3036 |
| PfoI | TCCNGGA | 1 cut(s) | 1983 |
| PkrI | GCNGC | 9 cut(s) | 460, 475, 758, 998, 1865, 2309, 2681, 2684, 3225 |
| PleI | GAGTC | 8 cut(s) | 605, 1552, 1686, 2381, 2420, 2835, 2904, 3302 |
| PpsI | GAGTC | 8 cut(s) | 605, 1552, 1686, 2381, 2420, 2835, 2904, 3302 |
| Ppu21I | YACGTR | 1 cut(s) | 3288 |
| PshBI | ATTAAT | 1 cut(s) | 2127 |
| PsiI | TTATAA | 3 cut(s) | 1269, 1721, 3429 |
| Psp124BI | GAGCTC | 1 cut(s) | 1101 |
| Psp6I | CCWGG | 4 cut(s) | 1067, 1200, 1983, 3412 |
| PspGI | CCWGG | 4 cut(s) | 1067, 1200, 1983, 3412 |
| PspN4I | GGNNCC | 4 cut(s) | 2035, 2970, 3208, 3341 |
| PspPI | GGNCC | 4 cut(s) | 492, 949, 3207, 3340 |
| PstI | CTGCAG | 2 cut(s) | 2325, 3228 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2486 |
| PsuI | RGATCY | 4 cut(s) | 1987, 2033, 2111, 2665 |
| PvuII | CAGCTG | 1 cut(s) | 2985 |
| RsaI | GTAC | 4 cut(s) | 574, 621, 663, 1165 |
| RsaNI | GTAC | 4 cut(s) | 573, 620, 662, 1164 |
| RseI | CAYNNNNRTG | 5 cut(s) | 513, 1224, 1587, 3129, 3414 |
| SacI | GAGCTC | 1 cut(s) | 1101 |
| SapI | GCTCTTC | 1 cut(s) | 1106 |
| SatI | GCNGC | 9 cut(s) | 459, 474, 757, 997, 1864, 2308, 2680, 2683, 3224 |
| Sau3AI | GATC | 9 cut(s) | 147, 314, 1051, 1987, 2033, 2111, 2665, 2896, 3211 |
| Sau96I | GGNCC | 4 cut(s) | 492, 949, 3207, 3340 |
| SchI | GAGTC | 8 cut(s) | 605, 1553, 1687, 2381, 2420, 2835, 2904, 3303 |
| ScrFI | CCNGG | 5 cut(s) | 1069, 1202, 1557, 1985, 3414 |
| SduI | GDGCHC | 3 cut(s) | 976, 1101, 1557 |
| SfcI | CTRYAG | 5 cut(s) | 1236, 1548, 1656, 2321, 3224 |
| SinI | GGWCC | 3 cut(s) | 949, 3207, 3340 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 513, 1224, 1587, 3129, 3414 |
| SmlI | CTYRAG | 4 cut(s) | 1182, 1675, 2063, 2659 |
| SmoI | CTYRAG | 4 cut(s) | 1182, 1675, 2063, 2659 |
| SphI | GCATGC | 1 cut(s) | 1501 |
| SseBI | AGGCCT | 1 cut(s) | 1188 |
| SsiI | CCGC | 6 cut(s) | 1420, 1774, 1799, 1864, 2209, 2679 |
| SspI | AATATT | 1 cut(s) | 2551 |
| SspMI | CTAG | 7 cut(s) | 839, 1076, 1406, 1511, 1940, 2204, 2513 |
| SstI | GAGCTC | 1 cut(s) | 1101 |
| StuI | AGGCCT | 1 cut(s) | 1188 |
| StyD4I | CCNGG | 5 cut(s) | 1067, 1200, 1555, 1983, 3412 |
| StyI | CCWWGG | 1 cut(s) | 2507 |
| TaaI | ACNGT | 8 cut(s) | 107, 1039, 1168, 1737, 1796, 2576, 3015, 3162 |
| TaiI | ACGT | 5 cut(s) | 574, 1876, 2292, 3290, 3372 |
| TauI | GCSGC | 2 cut(s) | 1866, 2682 |
| TscAI | CASTG | 3 cut(s) | 2218, 2491, 3363 |
| TseFI | GTSAC | 2 cut(s) | 1415, 2290 |
| TseI | GCWGC | 7 cut(s) | 458, 473, 756, 996, 2307, 2682, 3223 |
| Tsp45I | GTSAC | 2 cut(s) | 1415, 2290 |
| TspGWI | ACGGA | 3 cut(s) | 1182, 2464, 3377 |
| TspRI | CASTG | 3 cut(s) | 2218, 2491, 3363 |
| Vha464I | CTTAAG | 1 cut(s) | 2659 |
| VpaK11BI | GGWCC | 3 cut(s) | 949, 3207, 3340 |
| VspI | ATTAAT | 1 cut(s) | 2127 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2511 |
| XceI | RCATGY | 2 cut(s) | 631, 1501 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 583, 3048 |
| XmiI | GTMKAC | 2 cut(s) | 1231, 1547 |
| XmnI | GAANNNNTTC | 4 cut(s) | 204, 291, 2397, 3036 |
| XspI | CTAG | 7 cut(s) | 839, 1076, 1406, 1511, 1940, 2204, 2513 |
| Zsp2I | ATGCAT | 2 cut(s) | 1503, 2639 |