Rroxscaffold_3G00223440

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0001534
Physical Location & Seq
Reverse (-)
6537082 .. 6538183
1102 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00223440.1

Sequence Viewer

Length: 234 bp
ATGATGCTTCCGGGGTTTCGTTGCTTGGTGCTGACTAAGCAGGACGATCTGGTGGCCAGTGGTGGATGGGTTGCGAACTGGAGTTCCAGGCGGTGGCCTGGGGTGGGATCTCGACTTCTGTTGATGGCGGCCGAGAATTGCGACGTCAACCTGGCTTGGGGTTGCAGTGACGATGACCTCTTGCTAAAGGGACAGTCTGGTGTTCTTGGACTGGGGTTGGCTGCGGCTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

77

Amino Acids

8.23

Weight (kDa)

4.92

Isoelectric Point (pI)

47.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 147
AccB7I CCANNNNNTGG 1 cut(s) 93
AciI CCGC 3 cut(s) 91, 128, 224
AclWI GGATC 1 cut(s) 115
AcoI YGGCCR 2 cut(s) 54, 129
AcyI GRCGYC 1 cut(s) 144
AfiI CCNNNNNNNGG 3 cut(s) 93, 104, 157
AjnI CCWGG 3 cut(s) 86, 97, 150
AloI GAACNNNNNNTCC 2 cut(s) 68, 100
AlwI GGATC 1 cut(s) 115
AoxI GGCC 3 cut(s) 54, 95, 129
ApeKI GCWGC 1 cut(s) 221
AsuC2I CCSGG 1 cut(s) 12
BalI TGGCCA 1 cut(s) 56
BbvI GCAGC 1 cut(s) 208
BccI CCATC 2 cut(s) 60, 118
BciT130I CCWGG 3 cut(s) 88, 99, 152
BcnI CCSGG 1 cut(s) 12
BisI GCNGC 3 cut(s) 129, 222, 225
BlsI GCNGC 3 cut(s) 130, 223, 226
Bme1390I CCNGG 4 cut(s) 12, 88, 99, 152
BmrFI CCNGG 4 cut(s) 12, 88, 99, 152
BmrI ACTGGG 1 cut(s) 221
BmuI ACTGGG 1 cut(s) 221
BpmI CTGGAG 1 cut(s) 100
BpuMI CCSGG 1 cut(s) 12
BsaHI GRCGYC 1 cut(s) 144
BsaJI CCNNGG 2 cut(s) 11, 98
Bsc4I CCNNNNNNNGG 3 cut(s) 93, 104, 157
Bse1I ACTGG 3 cut(s) 57, 83, 216
BseBI CCWGG 3 cut(s) 88, 99, 152
BseDI CCNNGG 2 cut(s) 11, 98
BseGI GGATG 1 cut(s) 71
BseLI CCNNNNNNNGG 3 cut(s) 93, 104, 157
BseNI ACTGG 3 cut(s) 57, 83, 216
BseX3I CGGCCG 1 cut(s) 129
BseXI GCAGC 1 cut(s) 208
Bsh1285I CGRYCG 1 cut(s) 132
BshFI GGCC 3 cut(s) 56, 97, 131
BsiEI CGRYCG 1 cut(s) 132
BsiSI CCGG 1 cut(s) 11
BslFI GGGAC 1 cut(s) 204
BslI CCNNNNNNNGG 3 cut(s) 93, 104, 157
BsmFI GGGAC 1 cut(s) 204
BsnI GGCC 3 cut(s) 56, 97, 131
Bsp143I GATC 2 cut(s) 46, 107
BspACI CCGC 3 cut(s) 91, 128, 224
BspANI GGCC 3 cut(s) 56, 97, 131
BspPI GGATC 1 cut(s) 115
BsrI ACTGG 3 cut(s) 57, 83, 216
BssECI CCNNGG 2 cut(s) 11, 98
BssMI GATC 2 cut(s) 46, 107
BssNI GRCGYC 1 cut(s) 144
Bst2UI CCWGG 3 cut(s) 88, 99, 152
Bst4CI ACNGT 1 cut(s) 195
BstACI GRCGYC 1 cut(s) 144
BstDEI CTNAG 1 cut(s) 36
BstF5I GGATG 1 cut(s) 71
BstKTI GATC 2 cut(s) 49, 110
BstMBI GATC 2 cut(s) 46, 107
BstMCI CGRYCG 1 cut(s) 132
BstMWI GCNNNNNNNGC 1 cut(s) 37
BstNI CCWGG 3 cut(s) 88, 99, 152
BstSCI CCNGG 4 cut(s) 10, 86, 97, 150
BstV1I GCAGC 1 cut(s) 208
BstX2I RGATCY 1 cut(s) 107
BstYI RGATCY 1 cut(s) 107
BstZI CGGCCG 1 cut(s) 129
BsuRI GGCC 3 cut(s) 56, 97, 131
BtsCI GGATG 1 cut(s) 71
BtsI GCAGTG 1 cut(s) 172
BtsIMutI CAGTG 2 cut(s) 64, 172
CviJI RGCY 6 cut(s) 56, 97, 131, 155, 221, 227
CviKI_1 RGCY 6 cut(s) 56, 97, 131, 155, 221, 227
DdeI CTNAG 1 cut(s) 36
DpnI GATC 2 cut(s) 48, 109
DpnII GATC 2 cut(s) 46, 107
EaeI YGGCCR 2 cut(s) 54, 129
EagI CGGCCG 1 cut(s) 129
EclXI CGGCCG 1 cut(s) 129
Eco52I CGGCCG 1 cut(s) 129
EcoRII CCWGG 3 cut(s) 86, 97, 150
FaqI GGGAC 1 cut(s) 204
Fnu4HI GCNGC 3 cut(s) 129, 222, 225
FokI GGATG 1 cut(s) 78
Fsp4HI GCNGC 3 cut(s) 129, 222, 225
GluI GCNGC 3 cut(s) 129, 222, 225
GsuI CTGGAG 1 cut(s) 100
HaeIII GGCC 3 cut(s) 56, 97, 131
HapII CCGG 1 cut(s) 11
Hin1I GRCGYC 1 cut(s) 144
HincII GTYRAC 1 cut(s) 148
HindII GTYRAC 1 cut(s) 148
HpaII CCGG 1 cut(s) 11
Hpy166II GTNNAC 1 cut(s) 148
Hpy188III TCNNGA 1 cut(s) 111
Hpy8I GTNNAC 1 cut(s) 148
Hpy99I CGWCG 1 cut(s) 146
HpyCH4III ACNGT 1 cut(s) 195
HpyCH4IV ACGT 1 cut(s) 144
HpyCH4V TGCA 1 cut(s) 165
HpyF10VI GCNNNNNNNGC 1 cut(s) 37
HpyF3I CTNAG 1 cut(s) 36
HpySE526I ACGT 1 cut(s) 144
Hsp92I GRCGYC 1 cut(s) 144
Kzo9I GATC 2 cut(s) 46, 107
Lsp1109I GCAGC 1 cut(s) 208
MaeII ACGT 1 cut(s) 144
MaeIII GTNAC 1 cut(s) 167
MalI GATC 2 cut(s) 48, 109
MboI GATC 2 cut(s) 46, 107
MflI RGATCY 1 cut(s) 107
MlsI TGGCCA 1 cut(s) 56
MluCI AATT 1 cut(s) 136
MluNI TGGCCA 1 cut(s) 56
MnlI CCTC 1 cut(s) 188
Mox20I TGGCCA 1 cut(s) 56
MscI TGGCCA 1 cut(s) 56
Msp20I TGGCCA 1 cut(s) 56
MspI CCGG 1 cut(s) 11
MspR9I CCNGG 4 cut(s) 12, 88, 99, 152
MvaI CCWGG 3 cut(s) 88, 99, 152
MwoI GCNNNNNNNGC 1 cut(s) 37
NciI CCSGG 1 cut(s) 12
NdeII GATC 2 cut(s) 46, 107
NmeAIII GCCGAG 1 cut(s) 157
NmuCI GTSAC 1 cut(s) 167
PflMI CCANNNNNTGG 1 cut(s) 93
PkrI GCNGC 3 cut(s) 130, 223, 226
Psp6I CCWGG 3 cut(s) 86, 97, 150
PspGI CCWGG 3 cut(s) 86, 97, 150
PsuI RGATCY 1 cut(s) 107
SatI GCNGC 3 cut(s) 129, 222, 225
Sau3AI GATC 2 cut(s) 46, 107
ScrFI CCNGG 4 cut(s) 12, 88, 99, 152
SetI ASST 3 cut(s) 147, 153, 180
Sse9I AATT 1 cut(s) 136
SsiI CCGC 3 cut(s) 91, 128, 224
StyD4I CCNGG 4 cut(s) 10, 86, 97, 150
TaaI ACNGT 1 cut(s) 195
TaiI ACGT 1 cut(s) 147
TaqI TCGA 1 cut(s) 112
TasI AATT 1 cut(s) 136
TauI GCSGC 2 cut(s) 131, 227
TscAI CASTG 2 cut(s) 64, 172
TseFI GTSAC 1 cut(s) 167
TseI GCWGC 1 cut(s) 221
Tsp45I GTSAC 1 cut(s) 167
TspRI CASTG 2 cut(s) 64, 172
Van91I CCANNNNNTGG 1 cut(s) 93
ZraI GACGTC 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.