Prupe.7G152300_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0001534
Physical Location & Seq
Forward (+)
16284792 .. 16285833
1042 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G152300.1

Sequence Viewer

Length: 321 bp
ATGATGGAAGATTCATCAATCGTACGGATTGATAGGAAAACATCAATCGTACGGATTGATAGGAAAACATCAATAGAAAGTGAGCCAAGAACGCTGGGGTTTGATAAAATTCAGTTTGCAAGGGAGGCAGCTAGGTATGTGTTGAAAACAAAGAATATAGAAGAAGCAATGCGCATTTTCACAGAGGGTTTGGTGCCAGTGGCGAGTTCGATTAACCAAAATGGTGACGAAATGATGGATTCGGTTGAGGATCTTGAGTACTCAGAAGATAATTATATAAGACCACAAGGGCCGAGGGACTGTGTCTCAGCGCCTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

12.15

Weight (kDa)

4.78

Isoelectric Point (pI)

46.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 173
AccB1I GGYRCC 1 cut(s) 193
AclWI GGATC 1 cut(s) 258
AcsI RAATTY 1 cut(s) 108
AfaI GTAC 3 cut(s) 24, 51, 260
AgsI TTSAA 1 cut(s) 145
AluBI AGCT 1 cut(s) 131
AluI AGCT 1 cut(s) 131
Alw26I GTCTC 1 cut(s) 310
AlwI GGATC 1 cut(s) 258
AoxI GGCC 1 cut(s) 290
ApeKI GCWGC 1 cut(s) 128
ApoI RAATTY 1 cut(s) 108
AspLEI GCGC 2 cut(s) 174, 313
AspS9I GGNCC 1 cut(s) 290
AsuHPI GGTGA 1 cut(s) 236
BanI GGYRCC 1 cut(s) 193
BbvI GCAGC 1 cut(s) 140
BccI CCATC 1 cut(s) 229
BcoDI GTCTC 1 cut(s) 310
BfaI CTAG 1 cut(s) 132
BfoI RGCGCY 1 cut(s) 314
BisI GCNGC 1 cut(s) 129
BlsI GCNGC 1 cut(s) 130
BmcAI AGTACT 1 cut(s) 260
BmgT120I GGNCC 1 cut(s) 290
BmiI GGNNCC 1 cut(s) 195
BpuEI CTTGAG 1 cut(s) 275
BsaJI CCNNGG 1 cut(s) 293
Bse1I ACTGG 1 cut(s) 197
Bse3DI GCAATG 1 cut(s) 174
BseDI CCNNGG 1 cut(s) 293
BseMI GCAATG 1 cut(s) 174
BseMII CTCAG 2 cut(s) 276, 321
BseNI ACTGG 1 cut(s) 197
BseXI GCAGC 1 cut(s) 140
BseYI CCCAGC 1 cut(s) 94
BshFI GGCC 1 cut(s) 292
BshNI GGYRCC 1 cut(s) 193
BsiWI CGTACG 2 cut(s) 22, 49
BslFI GGGAC 1 cut(s) 311
BsmAI GTCTC 1 cut(s) 310
BsmFI GGGAC 1 cut(s) 311
BsnI GGCC 1 cut(s) 292
Bsp143I GATC 1 cut(s) 250
BspANI GGCC 1 cut(s) 292
BspCNI CTCAG 2 cut(s) 275, 320
BspLI GGNNCC 1 cut(s) 195
BspPI GGATC 1 cut(s) 258
BspT107I GGYRCC 1 cut(s) 193
BsrDI GCAATG 1 cut(s) 174
BsrI ACTGG 1 cut(s) 197
BssECI CCNNGG 1 cut(s) 293
BssMI GATC 1 cut(s) 250
Bst4CI ACNGT 1 cut(s) 302
BstDEI CTNAG 2 cut(s) 262, 307
BstH2I RGCGCY 1 cut(s) 314
BstHHI GCGC 2 cut(s) 174, 313
BstKTI GATC 1 cut(s) 253
BstMAI GTCTC 1 cut(s) 310
BstMBI GATC 1 cut(s) 250
BstMWI GCNNNNNNNGC 2 cut(s) 91, 125
BstV1I GCAGC 1 cut(s) 140
BstX2I RGATCY 1 cut(s) 250
BstYI RGATCY 1 cut(s) 250
BsuRI GGCC 1 cut(s) 292
BtsIMutI CAGTG 1 cut(s) 204
CfoI GCGC 2 cut(s) 174, 313
Cfr13I GGNCC 1 cut(s) 290
Csp6I GTAC 3 cut(s) 23, 50, 259
CviJI RGCY 3 cut(s) 85, 131, 292
CviKI_1 RGCY 3 cut(s) 85, 131, 292
CviQI GTAC 3 cut(s) 23, 50, 259
DdeI CTNAG 2 cut(s) 262, 307
DpnI GATC 1 cut(s) 252
DpnII GATC 1 cut(s) 250
FaiI YATR 4 cut(s) 138, 158, 276, 278
FaqI GGGAC 1 cut(s) 311
Fnu4HI GCNGC 1 cut(s) 129
Fsp4HI GCNGC 1 cut(s) 129
FspAI RTGCGCAY 1 cut(s) 173
FspBI CTAG 1 cut(s) 132
FspI TGCGCA 1 cut(s) 173
GlaI GCGC 2 cut(s) 173, 312
GluI GCNGC 1 cut(s) 129
GsaI CCCAGC 1 cut(s) 98
HaeII RGCGCY 1 cut(s) 314
HaeIII GGCC 1 cut(s) 292
HhaI GCGC 2 cut(s) 174, 313
Hin6I GCGC 2 cut(s) 172, 311
HinP1I GCGC 2 cut(s) 172, 311
HinfI GANTC 2 cut(s) 11, 239
HphI GGTGA 1 cut(s) 236
Hpy188I TCNGA 1 cut(s) 265
Hpy188III TCNNGA 1 cut(s) 254
HpyCH4III ACNGT 1 cut(s) 302
HpyCH4V TGCA 1 cut(s) 119
HpyF10VI GCNNNNNNNGC 2 cut(s) 91, 125
HpyF3I CTNAG 2 cut(s) 262, 307
HspAI GCGC 2 cut(s) 172, 311
Kzo9I GATC 1 cut(s) 250
LpnPI CCDG 2 cut(s) 80, 210
Lsp1109I GCAGC 1 cut(s) 140
MaeI CTAG 1 cut(s) 132
MaeIII GTNAC 1 cut(s) 224
MalI GATC 1 cut(s) 252
MboI GATC 1 cut(s) 250
MboII GAAGA 3 cut(s) 20, 173, 278
MflI RGATCY 1 cut(s) 250
MluCI AATT 2 cut(s) 108, 271
MnlI CCTC 4 cut(s) 118, 178, 241, 288
MseI TTAA 2 cut(s) 213, 319
MwoI GCNNNNNNNGC 2 cut(s) 91, 125
NdeII GATC 1 cut(s) 250
NlaIV GGNNCC 1 cut(s) 195
NmeAIII GCCGAG 1 cut(s) 318
NmuCI GTSAC 1 cut(s) 224
NsbI TGCGCA 1 cut(s) 173
PfeI GAWTC 2 cut(s) 11, 239
Pfl23II CGTACG 2 cut(s) 22, 49
PflFI GACNNNGTC 1 cut(s) 302
PkrI GCNGC 1 cut(s) 130
PspFI CCCAGC 1 cut(s) 94
PspLI CGTACG 2 cut(s) 22, 49
PspN4I GGNNCC 1 cut(s) 195
PspPI GGNCC 1 cut(s) 290
PsuI RGATCY 1 cut(s) 250
PsyI GACNNNGTC 1 cut(s) 302
RsaI GTAC 3 cut(s) 24, 51, 260
RsaNI GTAC 3 cut(s) 23, 50, 259
SaqAI TTAA 2 cut(s) 213, 319
SatI GCNGC 1 cut(s) 129
Sau3AI GATC 1 cut(s) 250
Sau96I GGNCC 1 cut(s) 290
ScaI AGTACT 1 cut(s) 260
SetI ASST 2 cut(s) 133, 137
SgeI CNNG 9 cut(s) 99, 107, 132, 144, 209, 216, 266, 299, 306
SmlI CTYRAG 1 cut(s) 254
SmoI CTYRAG 1 cut(s) 254
Sse9I AATT 2 cut(s) 108, 271
SspMI CTAG 1 cut(s) 132
TaaI ACNGT 1 cut(s) 302
TaqI TCGA 1 cut(s) 209
TasI AATT 2 cut(s) 108, 271
TatI WGTACW 1 cut(s) 258
TfiI GAWTC 2 cut(s) 11, 239
Tru1I TTAA 2 cut(s) 213, 319
Tru9I TTAA 2 cut(s) 213, 319
TscAI CASTG 1 cut(s) 204
TseFI GTSAC 1 cut(s) 224
TseI GCWGC 1 cut(s) 128
Tsp45I GTSAC 1 cut(s) 224
TspGWI ACGGA 2 cut(s) 40, 67
TspRI CASTG 1 cut(s) 204
Tth111I GACNNNGTC 1 cut(s) 302
XapI RAATTY 1 cut(s) 108
XspI CTAG 1 cut(s) 132
ZrmI AGTACT 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.