Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001534

Physical Location & Seq

Genomic Coordinates Forward (+)

48746376 .. 48746825

Gene Structure 450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003459

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGTTTAGGTTACTCTTTCTGAGAGGTAGGTGGAGGCCGTGGCCTCCTGGCGGCGGTTCTGCAAATTGGGCTGGAGGAGATGGGTTTTCCCTCTCATCTGGTCGTCGGGAGATTGAAGGCGACAGGATTTTTCGTTGTCGGAGTCTCAAAATCTTGTTTCTTGTTTTTCTGTTCGGGGTCTGGTGCCTTGGCAGCAGCAATGGTGATTCTGGGTCGTGCAAGGCAGCGACATTGGGTTGTGTTCCTAGGCAATCTGGATCGGACGATCTGGTGGCCAGTGGTGACCGAGTTGCGGATCGGAGCTCCGAGAGGTGGTCTGGGGTTGGATCTCGACTTTTGTTGATGGCGGTCGCGGCTTGCGACTTCAACCTGGCTTGCGGCGACGATGTTCTCTTGCTAAAGGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

136

Amino Acids

14.49

Weight (kDa)

8.93

Isoelectric Point (pI)

58.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001534)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33467 AT4G33467
fragaria_vesca	FvH4_1g13550
malus_domestica	MD02G1150700.v1.1 MD15G1265300.v1.1
prunus_persica	Prupe.7G152300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0101941 RchiOBHm_Chr7g0231621
rosa_laevigata	RLG00000003218 RLG00000003459 RLG00000005525 RLG00000005735 RLG00000008080 RLG00000009250 RLG00000012890 RLG00000014921 RLG00000016044 RLG00000017118 RLG00000017262 RLG00000018139 RLG00000018892 RLG00000019095 RLG00000020815 RLG00000023064 RLG00000024324 RLG00000024611 RLG00000024901 RLG00000025131 RLG00000026573 RLG00000028471 RLG00000029991 RLG00000030471 RLG00000033464 RLG00000033615
rosa_multiflora	Rmu_sc0000697.1_g000010 Rmu_sc0004767.1_g000002 Rmu_sc0012270.1_g000006
rosa_roxburghii	Rroxscaffold_2G00132820 Rroxscaffold_2G00140910 Rroxscaffold_3G00223440 Rroxscaffold_3G00265480 Rroxscaffold_5G00344290
rosa_rugosa	Rorug02G0103200 Rorug05G0210700 Rorug06G0152900
rosa_samantha	Rh2AG151300 Rh2BG156800 Rh2CG156600 Rh2DG156900 Rh6AG272100
rosa_wichuraiana	Rw2G011810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	183
AccII	CGCG	1 cut(s)	353
AciI	CCGC	6 cut(s)	51, 54, 293, 347, 353, 378
AclWI	GGATC	3 cut(s)	265, 303, 334
AcoI	YGGCCR	1 cut(s)	273
AfiI	CCNNNNNNNGG	4 cut(s)	50, 53, 292, 312
AgsI	TTSAA	2 cut(s)	116, 367
AjnI	CCWGG	2 cut(s)	46, 369
AluBI	AGCT	1 cut(s)	303
AluI	AGCT	1 cut(s)	303
Alw21I	GWGCWC	1 cut(s)	305
Alw26I	GTCTC	1 cut(s)	149
AlwI	GGATC	3 cut(s)	265, 303, 334
AoxI	GGCC	3 cut(s)	35, 41, 273
ApeKI	GCWGC	3 cut(s)	192, 195, 224
AspA2I	CCTAGG	1 cut(s)	245
AsuHPI	GGTGA	2 cut(s)	215, 293
AvrII	CCTAGG	1 cut(s)	245
BalI	TGGCCA	1 cut(s)	275
BanI	GGYRCC	1 cut(s)	183
BanII	GRGCYC	1 cut(s)	305
Bbv12I	GWGCWC	1 cut(s)	305
BbvI	GCAGC	3 cut(s)	204, 207, 236
BccI	CCATC	2 cut(s)	74, 337
BceAI	ACGGC	1 cut(s)	22
BciT130I	CCWGG	2 cut(s)	48, 371
BcoDI	GTCTC	1 cut(s)	149
BfaI	CTAG	1 cut(s)	246
BisI	GCNGC	6 cut(s)	52, 193, 196, 225, 354, 379
BlnI	CCTAGG	1 cut(s)	245
BlsI	GCNGC	6 cut(s)	53, 194, 197, 226, 355, 380
Bme1390I	CCNGG	2 cut(s)	48, 371
BmiI	GGNNCC	1 cut(s)	185
BmrFI	CCNGG	2 cut(s)	48, 371
BpmI	CTGGAG	1 cut(s)	93
BsaJI	CCNNGG	3 cut(s)	38, 187, 245
Bsc4I	CCNNNNNNNGG	4 cut(s)	50, 53, 292, 312
Bse1I	ACTGG	1 cut(s)	276
Bse3DI	GCAATG	1 cut(s)	205
BseBI	CCWGG	2 cut(s)	48, 371
BseDI	CCNNGG	3 cut(s)	38, 187, 245
BseLI	CCNNNNNNNGG	4 cut(s)	50, 53, 292, 312
BseMI	GCAATG	1 cut(s)	205
BseMII	CTCAG	1 cut(s)	11
BseNI	ACTGG	1 cut(s)	276
BseRI	GAGGAG	1 cut(s)	90
BseXI	GCAGC	3 cut(s)	204, 207, 236
Bsh1236I	CGCG	1 cut(s)	353
Bsh1285I	CGRYCG	1 cut(s)	351
BshFI	GGCC	3 cut(s)	37, 43, 275
BshNI	GGYRCC	1 cut(s)	183
BsiEI	CGRYCG	1 cut(s)	351
BsiHKAI	GWGCWC	1 cut(s)	305
BslI	CCNNNNNNNGG	4 cut(s)	50, 53, 292, 312
BsmAI	GTCTC	1 cut(s)	149
BsnI	GGCC	3 cut(s)	37, 43, 275
Bsp1286I	GDGCHC	1 cut(s)	305
Bsp143I	GATC	4 cut(s)	257, 265, 295, 326
BspACI	CCGC	6 cut(s)	51, 54, 293, 347, 353, 378
BspANI	GGCC	3 cut(s)	37, 43, 275
BspCNI	CTCAG	1 cut(s)	12
BspFNI	CGCG	1 cut(s)	353
BspLI	GGNNCC	1 cut(s)	185
BspPI	GGATC	3 cut(s)	265, 303, 334
BspT107I	GGYRCC	1 cut(s)	183
BsrDI	GCAATG	1 cut(s)	205
BsrI	ACTGG	1 cut(s)	276
BssECI	CCNNGG	3 cut(s)	38, 187, 245
BssMI	GATC	4 cut(s)	257, 265, 295, 326
BssT1I	CCWWGG	2 cut(s)	187, 245
Bst2UI	CCWGG	2 cut(s)	48, 371
BstC8I	GCNNGC	2 cut(s)	358, 376
BstDEI	CTNAG	1 cut(s)	20
BstDSI	CCRYGG	1 cut(s)	38
BstEII	GGTNACC	1 cut(s)	281
BstFNI	CGCG	1 cut(s)	353
BstKTI	GATC	4 cut(s)	260, 268, 298, 329
BstMAI	GTCTC	1 cut(s)	149
BstMBI	GATC	4 cut(s)	257, 265, 295, 326
BstMCI	CGRYCG	1 cut(s)	351
BstMWI	GCNNNNNNNGC	3 cut(s)	68, 192, 353
BstNI	CCWGG	2 cut(s)	48, 371
BstPI	GGTNACC	1 cut(s)	281
BstSCI	CCNGG	2 cut(s)	46, 369
BstUI	CGCG	1 cut(s)	353
BstV1I	GCAGC	3 cut(s)	204, 207, 236
BstX2I	RGATCY	1 cut(s)	326
BstYI	RGATCY	1 cut(s)	326
BsuRI	GGCC	3 cut(s)	37, 43, 275
BtgI	CCRYGG	1 cut(s)	38
BtsIMutI	CAGTG	1 cut(s)	283
Cac8I	GCNNGC	2 cut(s)	358, 376
CviJI	RGCY	7 cut(s)	37, 43, 71, 275, 303, 356, 374
CviKI_1	RGCY	7 cut(s)	37, 43, 71, 275, 303, 356, 374
DdeI	CTNAG	1 cut(s)	20
DpnI	GATC	4 cut(s)	259, 267, 297, 328
DpnII	GATC	4 cut(s)	257, 265, 295, 326
EaeI	YGGCCR	1 cut(s)	273
Ecl136II	GAGCTC	1 cut(s)	303
Eco130I	CCWWGG	2 cut(s)	187, 245
Eco24I	GRGCYC	1 cut(s)	305
Eco53kI	GAGCTC	1 cut(s)	303
Eco91I	GGTNACC	1 cut(s)	281
EcoICRI	GAGCTC	1 cut(s)	303
EcoO65I	GGTNACC	1 cut(s)	281
EcoRII	CCWGG	2 cut(s)	46, 369
EcoT14I	CCWWGG	2 cut(s)	187, 245
EcoT38I	GRGCYC	1 cut(s)	305
ErhI	CCWWGG	2 cut(s)	187, 245
Fnu4HI	GCNGC	6 cut(s)	52, 193, 196, 225, 354, 379
FriOI	GRGCYC	1 cut(s)	305
Fsp4HI	GCNGC	6 cut(s)	52, 193, 196, 225, 354, 379
FspBI	CTAG	1 cut(s)	246
GluI	GCNGC	6 cut(s)	52, 193, 196, 225, 354, 379
GsuI	CTGGAG	1 cut(s)	93
HaeIII	GGCC	3 cut(s)	37, 43, 275
HinfI	GANTC	2 cut(s)	142, 206
HphI	GGTGA	2 cut(s)	215, 293
Hpy188I	TCNGA	5 cut(s)	21, 141, 262, 300, 307
Hpy188III	TCNNGA	3 cut(s)	107, 255, 330
Hpy99I	CGWCG	2 cut(s)	108, 386
HpyAV	CCTTC	1 cut(s)	110
HpyCH4V	TGCA	2 cut(s)	62, 219
HpyF10VI	GCNNNNNNNGC	3 cut(s)	68, 192, 353
HpyF3I	CTNAG	1 cut(s)	20
Kzo9I	GATC	4 cut(s)	257, 265, 295, 326
LmnI	GCTCC	2 cut(s)	300, 308
Lsp1109I	GCAGC	3 cut(s)	204, 207, 236
MaeI	CTAG	1 cut(s)	246
MaeIII	GTNAC	2 cut(s)	9, 281
MalI	GATC	4 cut(s)	259, 267, 297, 328
MboI	GATC	4 cut(s)	257, 265, 295, 326
MflI	RGATCY	1 cut(s)	326
MhlI	GDGCHC	1 cut(s)	305
MlsI	TGGCCA	1 cut(s)	275
MluCI	AATT	1 cut(s)	64
MluNI	TGGCCA	1 cut(s)	275
MlyI	GAGTC	1 cut(s)	151
MmeI	TCCRAC	2 cut(s)	119, 304
MnlI	CCTC	6 cut(s)	17, 27, 54, 68, 101, 303
Mox20I	TGGCCA	1 cut(s)	275
MscI	TGGCCA	1 cut(s)	275
Msp20I	TGGCCA	1 cut(s)	275
MspR9I	CCNGG	2 cut(s)	48, 371
MvaI	CCWGG	2 cut(s)	48, 371
MvnI	CGCG	1 cut(s)	353
MwoI	GCNNNNNNNGC	3 cut(s)	68, 192, 353
NdeII	GATC	4 cut(s)	257, 265, 295, 326
NlaIV	GGNNCC	1 cut(s)	185
NmuCI	GTSAC	1 cut(s)	281
PcsI	WCGNNNNNNNCGW	1 cut(s)	357
PfeI	GAWTC	1 cut(s)	206
PkrI	GCNGC	6 cut(s)	53, 194, 197, 226, 355, 380
PleI	GAGTC	1 cut(s)	150
PpsI	GAGTC	1 cut(s)	150
Psp124BI	GAGCTC	1 cut(s)	305
Psp6I	CCWGG	2 cut(s)	46, 369
PspEI	GGTNACC	1 cut(s)	281
PspGI	CCWGG	2 cut(s)	46, 369
PspN4I	GGNNCC	1 cut(s)	185
PsuI	RGATCY	1 cut(s)	326
SacI	GAGCTC	1 cut(s)	305
SatI	GCNGC	6 cut(s)	52, 193, 196, 225, 354, 379
Sau3AI	GATC	4 cut(s)	257, 265, 295, 326
SchI	GAGTC	1 cut(s)	151
ScrFI	CCNGG	2 cut(s)	48, 371
SduI	GDGCHC	1 cut(s)	305
SetI	ASST	6 cut(s)	11, 28, 32, 305, 314, 372
Sse9I	AATT	1 cut(s)	64
SsiI	CCGC	6 cut(s)	51, 54, 293, 347, 353, 378
SspMI	CTAG	1 cut(s)	246
SstI	GAGCTC	1 cut(s)	305
StyD4I	CCNGG	2 cut(s)	46, 369
StyI	CCWWGG	2 cut(s)	187, 245
TaqI	TCGA	1 cut(s)	331
TaqII	GACCGA	1 cut(s)	300
TasI	AATT	1 cut(s)	64
TauI	GCSGC	3 cut(s)	54, 356, 381
TfiI	GAWTC	1 cut(s)	206
TscAI	CASTG	1 cut(s)	283
TseFI	GTSAC	1 cut(s)	281
TseI	GCWGC	3 cut(s)	192, 195, 224
Tsp45I	GTSAC	1 cut(s)	281
TspRI	CASTG	1 cut(s)	283
XmaJI	CCTAGG	1 cut(s)	245
XspI	CTAG	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.