Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001534

Physical Location & Seq

Genomic Coordinates Reverse (-)

37454047 .. 37454691

Gene Structure 645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024611

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGTCTAGGTTACTCTCTCTGAGAGGTAGGTGGAGGCCGTGGCCTCCTGGCGGCGGTTCTGCAAATTGGGTTAGAGGAGATGGGGTTTCCTTCTCGTCTAGTCACTGGGGGATTGAGGATGGCGGGATTCCCCGTCGTCGGATTCTCAAAATTGGGGGCAATGAAGAGCTTCTGTCTCGGGTGGCTTTTCATGGCAGCGGCAATGGTTTTGGGTCTTTCTTGATCCGGGATGTTTTGGAAGGTTTGGCTCTTCGAGTCGCAGAGGAGGCTTGCGTGGTCGGGCTAACAGATGCAGCGTTGATCTGTGCTGGAGCGGGGTTGGGTGCTACTGGGAGAGGCGACGATGGCGACGACCATCGGTGGATGACCTCCCAGTCCGGCGTAGTCGACTGGAGGTGGTCTAGTGTGCTGCTGTACTTGATTTGGGTGCCCATGAGTTTGGGTGGCCTTAGCAGGTCTAGTTCTGCTTGGAACCCTTCTGGGCCTAGTGCTAGGGTTTCCCATTCTTTTGGGCTTCTATTGGTATATGGGACAGCTGGGCTGCTTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

184

Amino Acids

19.42

Weight (kDa)

8.84

Isoelectric Point (pI)

54.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001534)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33467 AT4G33467
fragaria_vesca	FvH4_1g13550
malus_domestica	MD02G1150700.v1.1 MD15G1265300.v1.1
prunus_persica	Prupe.7G152300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0101941 RchiOBHm_Chr7g0231621
rosa_laevigata	RLG00000003218 RLG00000003459 RLG00000005525 RLG00000005735 RLG00000008080 RLG00000009250 RLG00000012890 RLG00000014921 RLG00000016044 RLG00000017118 RLG00000017262 RLG00000018139 RLG00000018892 RLG00000019095 RLG00000020815 RLG00000023064 RLG00000024324 RLG00000024611 RLG00000024901 RLG00000025131 RLG00000026573 RLG00000028471 RLG00000029991 RLG00000030471 RLG00000033464 RLG00000033615
rosa_multiflora	Rmu_sc0000697.1_g000010 Rmu_sc0004767.1_g000002 Rmu_sc0012270.1_g000006
rosa_roxburghii	Rroxscaffold_2G00132820 Rroxscaffold_2G00140910 Rroxscaffold_3G00223440 Rroxscaffold_3G00265480 Rroxscaffold_5G00344290
rosa_rugosa	Rorug02G0103200 Rorug05G0210700 Rorug06G0152900
rosa_samantha	Rh2AG151300 Rh2BG156800 Rh2CG156600 Rh2DG156900 Rh6AG272100
rosa_wichuraiana	Rw2G011810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	373
Acc36I	ACCTGC	1 cut(s)	444
AccB1I	GGYRCC	1 cut(s)	427
AccBSI	CCGCTC	1 cut(s)	314
AccI	GTMKAC	1 cut(s)	387
AciI	CCGC	5 cut(s)	51, 54, 123, 198, 314
AclWI	GGATC	1 cut(s)	217
AfaI	GTAC	1 cut(s)	416
AfiI	CCNNNNNNNGG	3 cut(s)	50, 53, 138
AjnI	CCWGG	1 cut(s)	46
AluBI	AGCT	3 cut(s)	169, 536, 549
AluI	AGCT	3 cut(s)	169, 536, 549
Alw26I	GTCTC	1 cut(s)	180
AlwI	GGATC	1 cut(s)	217
Ama87I	CYCGRG	1 cut(s)	177
AoxI	GGCC	4 cut(s)	35, 41, 445, 482
ApeKI	GCWGC	4 cut(s)	195, 293, 409, 541
Asp700I	GAANNNNTTC	1 cut(s)	168
AspS9I	GGNCC	1 cut(s)	482
AsuC2I	CCSGG	1 cut(s)	227
AvaI	CYCGRG	1 cut(s)	177
BaeGI	GKGCMC	1 cut(s)	432
BanI	GGYRCC	1 cut(s)	427
BbvI	GCAGC	4 cut(s)	207, 305, 396, 528
BccI	CCATC	4 cut(s)	74, 113, 338, 363
BceAI	ACGGC	1 cut(s)	22
BciT130I	CCWGG	1 cut(s)	48
BcnI	CCSGG	1 cut(s)	227
BcoDI	GTCTC	1 cut(s)	180
BfaI	CTAG	6 cut(s)	6, 99, 402, 459, 486, 492
BfuAI	ACCTGC	1 cut(s)	444
BisI	GCNGC	6 cut(s)	52, 196, 199, 294, 410, 542
BlpI	GCTNAGC	1 cut(s)	545
BlsI	GCNGC	6 cut(s)	53, 197, 200, 295, 411, 543
Bme1390I	CCNGG	2 cut(s)	48, 227
BmeT110I	CYCGRG	1 cut(s)	177
BmgT120I	GGNCC	1 cut(s)	482
BmiI	GGNNCC	2 cut(s)	429, 473
BmrFI	CCNGG	2 cut(s)	48, 227
BmrI	ACTGGG	3 cut(s)	115, 339, 367
BmsI	GCATC	1 cut(s)	280
BmuI	ACTGGG	3 cut(s)	115, 339, 367
BpmI	CTGGAG	2 cut(s)	330, 412
Bpu10I	CCTNAGC	1 cut(s)	449
Bpu1102I	GCTNAGC	1 cut(s)	545
BpuMI	CCSGG	1 cut(s)	227
BsaJI	CCNNGG	1 cut(s)	38
BsaXI	ACNNNNNCTCC	2 cut(s)	69, 99
Bsc4I	CCNNNNNNNGG	3 cut(s)	50, 53, 138
Bse1I	ACTGG	4 cut(s)	110, 334, 373, 395
Bse3DI	GCAATG	2 cut(s)	166, 208
BseBI	CCWGG	1 cut(s)	48
BseDI	CCNNGG	1 cut(s)	38
BseGI	GGATG	3 cut(s)	124, 235, 369
BseLI	CCNNNNNNNGG	3 cut(s)	50, 53, 138
BseMI	GCAATG	2 cut(s)	166, 208
BseMII	CTCAG	1 cut(s)	11
BseNI	ACTGG	4 cut(s)	110, 334, 373, 395
BseRI	GAGGAG	2 cut(s)	90, 278
BseSI	GKGCMC	1 cut(s)	432
BseXI	GCAGC	4 cut(s)	207, 305, 396, 528
BseYI	CCCAGC	1 cut(s)	536
BshFI	GGCC	4 cut(s)	37, 43, 447, 484
BshNI	GGYRCC	1 cut(s)	427
BsiHKCI	CYCGRG	1 cut(s)	177
BsiSI	CCGG	2 cut(s)	226, 378
BslFI	GGGAC	1 cut(s)	544
BslI	CCNNNNNNNGG	3 cut(s)	50, 53, 138
BsmAI	GTCTC	1 cut(s)	180
BsmFI	GGGAC	1 cut(s)	544
BsnI	GGCC	4 cut(s)	37, 43, 447, 484
BsoBI	CYCGRG	1 cut(s)	177
Bsp1286I	GDGCHC	1 cut(s)	432
Bsp143I	GATC	2 cut(s)	222, 300
Bsp1720I	GCTNAGC	1 cut(s)	545
BspACI	CCGC	5 cut(s)	51, 54, 123, 198, 314
BspANI	GGCC	4 cut(s)	37, 43, 447, 484
BspCNI	CTCAG	1 cut(s)	12
BspLI	GGNNCC	2 cut(s)	429, 473
BspMI	ACCTGC	1 cut(s)	444
BspPI	GGATC	1 cut(s)	217
BspQI	GCTCTTC	2 cut(s)	159, 255
BspT107I	GGYRCC	1 cut(s)	427
BsrBI	CCGCTC	1 cut(s)	314
BsrDI	GCAATG	2 cut(s)	166, 208
BsrI	ACTGG	4 cut(s)	110, 334, 373, 395
BssECI	CCNNGG	1 cut(s)	38
BssMI	GATC	2 cut(s)	222, 300
Bst2UI	CCWGG	1 cut(s)	48
Bst6I	CTCTTC	2 cut(s)	159, 255
BstC8I	GCNNGC	1 cut(s)	271
BstDEI	CTNAG	3 cut(s)	20, 449, 545
BstDSI	CCRYGG	1 cut(s)	38
BstF5I	GGATG	3 cut(s)	124, 235, 369
BstKTI	GATC	2 cut(s)	225, 303
BstMAI	GTCTC	1 cut(s)	180
BstMBI	GATC	2 cut(s)	222, 300
BstMWI	GCNNNNNNNGC	2 cut(s)	266, 345
BstNI	CCWGG	1 cut(s)	48
BstSCI	CCNGG	2 cut(s)	46, 225
BstSLI	GKGCMC	1 cut(s)	432
BstV1I	GCAGC	4 cut(s)	207, 305, 396, 528
BstXI	CCANNNNNNTGG	2 cut(s)	439, 509
BsuRI	GGCC	4 cut(s)	37, 43, 447, 484
BtgI	CCRYGG	1 cut(s)	38
BtsCI	GGATG	3 cut(s)	124, 235, 369
BtsIMutI	CAGTG	1 cut(s)	103
BveI	ACCTGC	1 cut(s)	444
Cac8I	GCNNGC	1 cut(s)	271
Cfr13I	GGNCC	1 cut(s)	482
Csp6I	GTAC	1 cut(s)	415
CviAII	CATG	2 cut(s)	191, 433
CviQI	GTAC	1 cut(s)	415
DdeI	CTNAG	3 cut(s)	20, 449, 545
DpnI	GATC	2 cut(s)	224, 302
DpnII	GATC	2 cut(s)	222, 300
DrdI	GACNNNNNNGTC	1 cut(s)	373
DseDI	GACNNNNNNGTC	1 cut(s)	373
Eam1104I	CTCTTC	2 cut(s)	159, 255
EarI	CTCTTC	2 cut(s)	159, 255
Eco88I	CYCGRG	1 cut(s)	177
EcoRII	CCWGG	1 cut(s)	46
FaeI	CATG	2 cut(s)	194, 436
FaiI	YATR	4 cut(s)	192, 434, 526, 528
FaqI	GGGAC	1 cut(s)	544
FatI	CATG	2 cut(s)	190, 432
FauI	CCCGC	2 cut(s)	116, 307
FblI	GTMKAC	1 cut(s)	387
Fnu4HI	GCNGC	6 cut(s)	52, 196, 199, 294, 410, 542
FokI	GGATG	3 cut(s)	131, 242, 376
Fsp4HI	GCNGC	6 cut(s)	52, 196, 199, 294, 410, 542
FspBI	CTAG	6 cut(s)	6, 99, 402, 459, 486, 492
GluI	GCNGC	6 cut(s)	52, 196, 199, 294, 410, 542
GsaI	CCCAGC	1 cut(s)	540
GsuI	CTGGAG	2 cut(s)	330, 412
HaeIII	GGCC	4 cut(s)	37, 43, 447, 484
HapII	CCGG	2 cut(s)	226, 378
Hin1II	CATG	2 cut(s)	194, 436
HincII	GTYRAC	1 cut(s)	388
HindII	GTYRAC	1 cut(s)	388
HinfI	GANTC	3 cut(s)	127, 142, 255
HpaII	CCGG	2 cut(s)	226, 378
Hpy166II	GTNNAC	1 cut(s)	388
Hpy188I	TCNGA	2 cut(s)	21, 141
Hpy188III	TCNNGA	1 cut(s)	220
Hpy8I	GTNNAC	1 cut(s)	388
Hpy99I	CGWCG	4 cut(s)	138, 141, 344, 353
HpyAV	CCTTC	3 cut(s)	100, 233, 486
HpyCH4V	TGCA	2 cut(s)	62, 293
HpyF10VI	GCNNNNNNNGC	2 cut(s)	266, 345
HpyF3I	CTNAG	3 cut(s)	20, 449, 545
Hsp92II	CATG	2 cut(s)	194, 436
Kzo9I	GATC	2 cut(s)	222, 300
LguI	GCTCTTC	2 cut(s)	159, 255
LmnI	GCTCC	1 cut(s)	311
Lsp1109I	GCAGC	4 cut(s)	207, 305, 396, 528
LweI	GCATC	1 cut(s)	280
MaeI	CTAG	6 cut(s)	6, 99, 402, 459, 486, 492
MaeIII	GTNAC	2 cut(s)	9, 101
MalI	GATC	2 cut(s)	224, 302
MbiI	CCGCTC	1 cut(s)	314
MboI	GATC	2 cut(s)	222, 300
MboII	GAAGA	2 cut(s)	176, 242
MhlI	GDGCHC	1 cut(s)	432
MluCI	AATT	2 cut(s)	64, 150
MlyI	GAGTC	1 cut(s)	264
MmeI	TCCRAC	1 cut(s)	119
MroXI	GAANNNNTTC	1 cut(s)	168
MspA1I	CMGCKG	2 cut(s)	198, 536
MspI	CCGG	2 cut(s)	226, 378
MspR9I	CCNGG	2 cut(s)	48, 227
MvaI	CCWGG	1 cut(s)	48
MwoI	GCNNNNNNNGC	2 cut(s)	266, 345
NciI	CCSGG	1 cut(s)	227
NdeII	GATC	2 cut(s)	222, 300
NlaIII	CATG	2 cut(s)	194, 436
NlaIV	GGNNCC	2 cut(s)	429, 473
NmuCI	GTSAC	1 cut(s)	101
PciSI	GCTCTTC	2 cut(s)	159, 255
PcsI	WCGNNNNNNNCGW	1 cut(s)	348
PdmI	GAANNNNTTC	1 cut(s)	168
PfeI	GAWTC	2 cut(s)	127, 142
PfoI	TCCNGGA	1 cut(s)	225
PkrI	GCNGC	6 cut(s)	53, 197, 200, 295, 411, 543
PleI	GAGTC	1 cut(s)	263
PpsI	GAGTC	1 cut(s)	263
Psp6I	CCWGG	1 cut(s)	46
PspFI	CCCAGC	1 cut(s)	536
PspGI	CCWGG	1 cut(s)	46
PspN4I	GGNNCC	2 cut(s)	429, 473
PspPI	GGNCC	1 cut(s)	482
PvuII	CAGCTG	1 cut(s)	536
RsaI	GTAC	1 cut(s)	416
RsaNI	GTAC	1 cut(s)	415
SalI	GTCGAC	1 cut(s)	386
SapI	GCTCTTC	2 cut(s)	159, 255
SatI	GCNGC	6 cut(s)	52, 196, 199, 294, 410, 542
Sau3AI	GATC	2 cut(s)	222, 300
Sau96I	GGNCC	1 cut(s)	482
SchI	GAGTC	1 cut(s)	264
ScrFI	CCNGG	2 cut(s)	48, 227
SduI	GDGCHC	1 cut(s)	432
SfaNI	GCATC	1 cut(s)	280
Sse9I	AATT	2 cut(s)	64, 150
SsiI	CCGC	5 cut(s)	51, 54, 123, 198, 314
SspMI	CTAG	6 cut(s)	6, 99, 402, 459, 486, 492
StyD4I	CCNGG	2 cut(s)	46, 225
TaqI	TCGA	2 cut(s)	253, 387
TasI	AATT	2 cut(s)	64, 150
TatI	WGTACW	1 cut(s)	414
TauI	GCSGC	2 cut(s)	54, 201
TfiI	GAWTC	2 cut(s)	127, 142
TscAI	CASTG	1 cut(s)	110
TseFI	GTSAC	1 cut(s)	101
TseI	GCWGC	4 cut(s)	195, 293, 409, 541
Tsp45I	GTSAC	1 cut(s)	101
TspDTI	ATGAA	2 cut(s)	177, 179
TspRI	CASTG	1 cut(s)	110
XmiI	GTMKAC	1 cut(s)	387
XmnI	GAANNNNTTC	1 cut(s)	168
XspI	CTAG	6 cut(s)	6, 99, 402, 459, 486, 492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.