RLG00000030471

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0001534
Physical Location & Seq
Reverse (-)
62161422 .. 62162147
726 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030471

Sequence Viewer

Length: 675 bp
ATGCGTAGGTTACTCTCTGTGAGAGGTAGGTGGAGGTTGTGGCCTTATGGCGGCGGCTCTGCAAATTGGGCTGGAAGAGATGGAATGTCCCTCTCGTCTGGTCGCTGGGAGATTGAGGGCCGCGGGGTTCCTCGTAGTCGGCATCTCAAATTTAGGGCTGGTGGTGAGCCTGTGTTGCGAGGAGTTTCTCGCGGCGGATATGAGGGATCTGGGTCATTTGGGATTGAGGATGGCTGGACAAGACTGGGTCCAGTGATTGGTGCTGGTCACGAGGTCGCTGGCTGGGTGTTGTCGGCGAATGGTGACATAGATGATGATTGCGGTGCTGGGTTAGCAATGGCTCCACCAATTTGTGTTGGAGTAAAGCTGGCTGCTGTTGGGAGAGGCGACGATGGCAGTGGACGGTGGTGGAAGTCTTCCACGGCCGGCGTTGTCGATTGGCGGTGGACTAGTACTCCACCTTGCTGGGTTTGGGTGTCCATGGGTTTGGGTGGCCTTAGCAAGTTCAGTTGGGCTTTGAACCCTTCTGGGCCTAGTGCTAGGGTTTCCCTTTCTTTTGGGCCTCTGTCTGGCATATGGAGTAGTTGGGTTGCTGGGCTAGCTTATTTTAATTTTAATTACTTTTATGTAAGAATTCATTCTCCTATGGAGAATGAACTCGTAGCTTCTCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

225

Amino Acids

24.09

Weight (kDa)

9.59

Isoelectric Point (pI)

41.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 257
AccII CGCG 2 cut(s) 123, 192
AciI CCGC 8 cut(s) 51, 54, 121, 123, 192, 195, 321, 442
AclWI GGATC 1 cut(s) 214
AcoI YGGCCR 1 cut(s) 423
AcsI RAATTY 2 cut(s) 149, 633
AfaI GTAC 1 cut(s) 454
AfiI CCNNNNNNNGG 3 cut(s) 50, 257, 569
AgsI TTSAA 1 cut(s) 520
AhlI ACTAGT 1 cut(s) 449
AluBI AGCT 3 cut(s) 367, 602, 665
AluI AGCT 3 cut(s) 367, 602, 665
AlwI GGATC 1 cut(s) 214
AoxI GGCC 6 cut(s) 41, 118, 423, 493, 530, 560
ApeKI GCWGC 1 cut(s) 371
ApoI RAATTY 2 cut(s) 149, 633
Asp700I GAANNNNTTC 1 cut(s) 637
AspS9I GGNCC 4 cut(s) 118, 248, 530, 560
AsuHPI GGTGA 2 cut(s) 176, 314
AsuNHI GCTAGC 1 cut(s) 598
AvaII GGWCC 1 cut(s) 248
BauI CACGAG 1 cut(s) 269
BbsI GAAGAC 1 cut(s) 408
BbvI GCAGC 1 cut(s) 358
BccI CCATC 3 cut(s) 74, 224, 386
BceAI ACGGC 1 cut(s) 438
BcuI ACTAGT 1 cut(s) 449
BfaI CTAG 4 cut(s) 450, 534, 540, 599
BisI GCNGC 5 cut(s) 52, 55, 121, 193, 372
BlsI GCNGC 5 cut(s) 53, 56, 122, 194, 373
BmcAI AGTACT 1 cut(s) 454
Bme18I GGWCC 1 cut(s) 248
BmgT120I GGNCC 4 cut(s) 118, 248, 530, 560
BmiI GGNNCC 3 cut(s) 129, 249, 342
BmrI ACTGGG 1 cut(s) 254
BmsI GCATC 1 cut(s) 151
BmtI GCTAGC 1 cut(s) 602
BmuI ACTGGG 1 cut(s) 254
BpiI GAAGAC 1 cut(s) 408
Bpu10I CCTNAGC 1 cut(s) 497
BsaJI CCNNGG 3 cut(s) 121, 420, 480
BsaXI ACNNNNNCTCC 2 cut(s) 439, 469
Bsc4I CCNNNNNNNGG 3 cut(s) 50, 257, 569
Bse118I RCCGGY 1 cut(s) 425
Bse1I ACTGG 2 cut(s) 249, 251
Bse3DI GCAATG 1 cut(s) 342
BseDI CCNNGG 3 cut(s) 121, 420, 480
BseGI GGATG 1 cut(s) 235
BseLI CCNNNNNNNGG 3 cut(s) 50, 257, 569
BseMI GCAATG 1 cut(s) 342
BseNI ACTGG 2 cut(s) 249, 251
BseRI GAGGAG 1 cut(s) 195
BseX3I CGGCCG 1 cut(s) 423
BseXI GCAGC 1 cut(s) 358
BseYI CCCAGC 5 cut(s) 105, 282, 326, 465, 593
Bsh1236I CGCG 2 cut(s) 123, 192
Bsh1285I CGRYCG 1 cut(s) 426
BshFI GGCC 6 cut(s) 43, 120, 425, 495, 532, 562
BsiEI CGRYCG 1 cut(s) 426
BsiSI CCGG 1 cut(s) 426
BslFI GGGAC 1 cut(s) 73
BslI CCNNNNNNNGG 3 cut(s) 50, 257, 569
BsmFI GGGAC 1 cut(s) 73
BsnI GGCC 6 cut(s) 43, 120, 425, 495, 532, 562
Bsp143I GATC 1 cut(s) 206
Bsp19I CCATGG 1 cut(s) 480
BspACI CCGC 8 cut(s) 51, 54, 121, 123, 192, 195, 321, 442
BspANI GGCC 6 cut(s) 43, 120, 425, 495, 532, 562
BspFNI CGCG 2 cut(s) 123, 192
BspLI GGNNCC 3 cut(s) 129, 249, 342
BspOI GCTAGC 1 cut(s) 602
BspPI GGATC 1 cut(s) 214
BsrDI GCAATG 1 cut(s) 342
BsrFI RCCGGY 1 cut(s) 425
BsrI ACTGG 2 cut(s) 249, 251
BssAI RCCGGY 1 cut(s) 425
BssECI CCNNGG 3 cut(s) 121, 420, 480
BssMI GATC 1 cut(s) 206
BssSI CACGAG 1 cut(s) 269
BssT1I CCWWGG 1 cut(s) 480
Bst2BI CACGAG 1 cut(s) 269
Bst4CI ACNGT 1 cut(s) 405
Bst6I CTCTTC 1 cut(s) 70
BstC8I GCNNGC 4 cut(s) 280, 369, 427, 600
BstDEI CTNAG 1 cut(s) 497
BstDSI CCRYGG 3 cut(s) 121, 420, 480
BstF5I GGATG 1 cut(s) 235
BstFNI CGCG 2 cut(s) 123, 192
BstKTI GATC 1 cut(s) 209
BstMBI GATC 1 cut(s) 206
BstMCI CGRYCG 1 cut(s) 426
BstMWI GCNNNNNNNGC 5 cut(s) 68, 175, 332, 393, 599
BstUI CGCG 2 cut(s) 123, 192
BstV1I GCAGC 1 cut(s) 358
BstV2I GAAGAC 1 cut(s) 408
BstX2I RGATCY 1 cut(s) 206
BstXI CCANNNNNNTGG 2 cut(s) 465, 487
BstYI RGATCY 1 cut(s) 206
BstZI CGGCCG 1 cut(s) 423
BsuRI GGCC 6 cut(s) 43, 120, 425, 495, 532, 562
BtgI CCRYGG 3 cut(s) 121, 420, 480
BtsCI GGATG 1 cut(s) 235
BtsI GCAGTG 1 cut(s) 403
BtsIMutI CAGTG 2 cut(s) 258, 403
Cac8I GCNNGC 4 cut(s) 280, 369, 427, 600
Cfr10I RCCGGY 1 cut(s) 425
Cfr13I GGNCC 4 cut(s) 118, 248, 530, 560
Cfr42I CCGCGG 1 cut(s) 124
Csp6I GTAC 1 cut(s) 453
CviAII CATG 1 cut(s) 481
CviQI GTAC 1 cut(s) 453
DdeI CTNAG 1 cut(s) 497
DpnI GATC 1 cut(s) 208
DpnII GATC 1 cut(s) 206
EaeI YGGCCR 1 cut(s) 423
EagI CGGCCG 1 cut(s) 423
Eam1104I CTCTTC 1 cut(s) 70
EarI CTCTTC 1 cut(s) 70
EciI GGCGGA 1 cut(s) 210
EclXI CGGCCG 1 cut(s) 423
Eco130I CCWWGG 1 cut(s) 480
Eco47I GGWCC 1 cut(s) 248
Eco52I CGGCCG 1 cut(s) 423
EcoRI GAATTC 1 cut(s) 633
EcoT14I CCWWGG 1 cut(s) 480
ErhI CCWWGG 1 cut(s) 480
FaeI CATG 1 cut(s) 484
FaiI YATR 8 cut(s) 48, 201, 308, 482, 575, 577, 627, 647
FaqI GGGAC 1 cut(s) 73
FatI CATG 1 cut(s) 480
FauI CCCGC 1 cut(s) 116
FauNDI CATATG 1 cut(s) 575
Fnu4HI GCNGC 5 cut(s) 52, 55, 121, 193, 372
FokI GGATG 1 cut(s) 242
Fsp4HI GCNGC 5 cut(s) 52, 55, 121, 193, 372
FspBI CTAG 4 cut(s) 450, 534, 540, 599
GluI GCNGC 5 cut(s) 52, 55, 121, 193, 372
GsaI CCCAGC 5 cut(s) 109, 286, 330, 469, 597
HaeIII GGCC 6 cut(s) 43, 120, 425, 495, 532, 562
HapII CCGG 1 cut(s) 426
Hin1II CATG 1 cut(s) 484
HpaII CCGG 1 cut(s) 426
HphI GGTGA 2 cut(s) 176, 314
Hpy166II GTNNAC 2 cut(s) 401, 447
Hpy188III TCNNGA 1 cut(s) 269
Hpy8I GTNNAC 2 cut(s) 401, 447
Hpy99I CGWCG 1 cut(s) 392
HpyAV CCTTC 1 cut(s) 534
HpyCH4III ACNGT 1 cut(s) 405
HpyCH4V TGCA 1 cut(s) 62
HpyF10VI GCNNNNNNNGC 5 cut(s) 68, 175, 332, 393, 599
HpyF3I CTNAG 1 cut(s) 497
Hsp92II CATG 1 cut(s) 484
KroI GCCGGC 1 cut(s) 425
KroNI GCCGGC 1 cut(s) 427
KspI CCGCGG 1 cut(s) 124
Kzo9I GATC 1 cut(s) 206
LmnI GCTCC 1 cut(s) 346
Lsp1109I GCAGC 1 cut(s) 358
LweI GCATC 1 cut(s) 151
MaeI CTAG 4 cut(s) 450, 534, 540, 599
MaeIII GTNAC 3 cut(s) 9, 266, 302
MalI GATC 1 cut(s) 208
MboI GATC 1 cut(s) 206
MboII GAAGA 2 cut(s) 87, 408
MflI RGATCY 1 cut(s) 206
MluCI AATT 6 cut(s) 64, 149, 348, 610, 616, 633
MmeI TCCRAC 1 cut(s) 337
MroNI GCCGGC 1 cut(s) 425
MroXI GAANNNNTTC 1 cut(s) 637
MseI TTAA 2 cut(s) 609, 615
MspA1I CMGCKG 1 cut(s) 123
MspI CCGG 1 cut(s) 426
MvnI CGCG 2 cut(s) 123, 192
MwoI GCNNNNNNNGC 5 cut(s) 68, 175, 332, 393, 599
NaeI GCCGGC 1 cut(s) 427
NcoI CCATGG 1 cut(s) 480
NdeI CATATG 1 cut(s) 575
NdeII GATC 1 cut(s) 206
NgoMIV GCCGGC 1 cut(s) 425
NheI GCTAGC 1 cut(s) 598
NlaIII CATG 1 cut(s) 484
NlaIV GGNNCC 3 cut(s) 129, 249, 342
NmuCI GTSAC 2 cut(s) 266, 302
PdiI GCCGGC 1 cut(s) 427
PdmI GAANNNNTTC 1 cut(s) 637
PflFI GACNNNGTC 1 cut(s) 246
PflMI CCANNNNNTGG 1 cut(s) 257
PkrI GCNGC 5 cut(s) 53, 56, 122, 194, 373
PspFI CCCAGC 5 cut(s) 105, 282, 326, 465, 593
PspN4I GGNNCC 3 cut(s) 129, 249, 342
PspPI GGNCC 4 cut(s) 118, 248, 530, 560
PsuI RGATCY 1 cut(s) 206
PsyI GACNNNGTC 1 cut(s) 246
RsaI GTAC 1 cut(s) 454
RsaNI GTAC 1 cut(s) 453
SacII CCGCGG 1 cut(s) 124
SaqAI TTAA 2 cut(s) 609, 615
SatI GCNGC 5 cut(s) 52, 55, 121, 193, 372
Sau3AI GATC 1 cut(s) 206
Sau96I GGNCC 4 cut(s) 118, 248, 530, 560
ScaI AGTACT 1 cut(s) 454
SetI ASST 9 cut(s) 11, 28, 32, 38, 276, 369, 463, 604, 667
SfaNI GCATC 1 cut(s) 151
Sfr303I CCGCGG 1 cut(s) 124
SgrBI CCGCGG 1 cut(s) 124
SinI GGWCC 1 cut(s) 248
SpeI ACTAGT 1 cut(s) 449
Sse9I AATT 6 cut(s) 64, 149, 348, 610, 616, 633
SsiI CCGC 8 cut(s) 51, 54, 121, 123, 192, 195, 321, 442
SspMI CTAG 4 cut(s) 450, 534, 540, 599
StyI CCWWGG 1 cut(s) 480
TaaI ACNGT 1 cut(s) 405
TaqI TCGA 1 cut(s) 435
TasI AATT 6 cut(s) 64, 149, 348, 610, 616, 633
TatI WGTACW 1 cut(s) 452
TauI GCSGC 4 cut(s) 54, 57, 123, 195
Tru1I TTAA 2 cut(s) 609, 615
Tru9I TTAA 2 cut(s) 609, 615
TscAI CASTG 2 cut(s) 258, 403
TseFI GTSAC 2 cut(s) 266, 302
TseI GCWGC 1 cut(s) 371
Tsp45I GTSAC 2 cut(s) 266, 302
TspDTI ATGAA 2 cut(s) 626, 669
TspRI CASTG 2 cut(s) 258, 403
Tth111I GACNNNGTC 1 cut(s) 246
Van91I CCANNNNNTGG 1 cut(s) 257
VpaK11BI GGWCC 1 cut(s) 248
XapI RAATTY 2 cut(s) 149, 633
XmnI GAANNNNTTC 1 cut(s) 637
XspI CTAG 4 cut(s) 450, 534, 540, 599
ZrmI AGTACT 1 cut(s) 454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.