Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001534

Physical Location & Seq

Genomic Coordinates Forward (+)

68294357 .. 68294767

Gene Structure 411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005525

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGCTTAGGTTACTCTCTCTGAGAGGTAGGTGGAGGTCGTGGCCTCATGGCGGCGGATCTGCAAATTGGGGTAGAGGAGATGGGATTTCCCTCTCGTCTAGCCGTTGGGAGATTGAGGGTTGCGGGGATCCCCGTAGTCAGCTTCTCAAAATTGGGGGCGGTGGTGTGCCTACGTTGCGGGGATTTTCTCGTGGCAGATATGATGGATCCGGGTCACTCTTGATCGAGGTTGGTTGGATGGGAACGGAACCAATGCCTGGTGCTGTTCGATGGGCTGCGCAGTGGAGTGCCGGGCGGCGATCTTCTTCAGGTGTTCATGCATTGCCGGGTGGCTGGGGGCTGTCGGCAGATGGTGACATCGATGATGATGGCAGTGTTGGGCTAGCAGTGGAGTCACCGATATGTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

137

Amino Acids

14.22

Weight (kDa)

7.86

Isoelectric Point (pI)

69.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001534)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33467 AT4G33467
fragaria_vesca	FvH4_1g13550
malus_domestica	MD02G1150700.v1.1 MD15G1265300.v1.1
prunus_persica	Prupe.7G152300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0101941 RchiOBHm_Chr7g0231621
rosa_laevigata	RLG00000003218 RLG00000003459 RLG00000005525 RLG00000005735 RLG00000008080 RLG00000009250 RLG00000012890 RLG00000014921 RLG00000016044 RLG00000017118 RLG00000017262 RLG00000018139 RLG00000018892 RLG00000019095 RLG00000020815 RLG00000023064 RLG00000024324 RLG00000024611 RLG00000024901 RLG00000025131 RLG00000026573 RLG00000028471 RLG00000029991 RLG00000030471 RLG00000033464 RLG00000033615
rosa_multiflora	Rmu_sc0000697.1_g000010 Rmu_sc0004767.1_g000002 Rmu_sc0012270.1_g000006
rosa_roxburghii	Rroxscaffold_2G00132820 Rroxscaffold_2G00140910 Rroxscaffold_3G00223440 Rroxscaffold_3G00265480 Rroxscaffold_5G00344290
rosa_rugosa	Rorug02G0103200 Rorug05G0210700 Rorug06G0152900
rosa_samantha	Rh2AG151300 Rh2BG156800 Rh2CG156600 Rh2DG156900 Rh6AG272100
rosa_wichuraiana	Rw2G011810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	279
AccB7I	CCANNNNNTGG	1 cut(s)	257
AciI	CCGC	6 cut(s)	51, 54, 123, 159, 178, 295
AclWI	GGATC	5 cut(s)	64, 122, 135, 201, 214
AcuI	CTGAAG	1 cut(s)	291
AfiI	CCNNNNNNNGG	2 cut(s)	50, 257
AjnI	CCWGG	1 cut(s)	256
AluBI	AGCT	1 cut(s)	142
AluI	AGCT	1 cut(s)	142
AlwI	GGATC	5 cut(s)	64, 122, 135, 201, 214
AoxI	GGCC	1 cut(s)	41
ApeKI	GCWGC	1 cut(s)	275
AspLEI	GCGC	1 cut(s)	280
AsuC2I	CCSGG	3 cut(s)	211, 292, 327
AsuHPI	GGTGA	2 cut(s)	365, 387
AsuNHI	GCTAGC	1 cut(s)	382
BamHI	GGATCC	2 cut(s)	127, 206
BauI	CACGAG	1 cut(s)	189
BbvI	GCAGC	1 cut(s)	262
BccI	CCATC	6 cut(s)	74, 197, 232, 264, 344, 362
BceAI	ACGGC	1 cut(s)	87
BciT130I	CCWGG	1 cut(s)	258
BcnI	CCSGG	3 cut(s)	211, 292, 327
BfaI	CTAG	2 cut(s)	99, 383
BisI	GCNGC	3 cut(s)	52, 276, 296
BlsI	GCNGC	3 cut(s)	53, 277, 297
Bme1390I	CCNGG	4 cut(s)	211, 258, 292, 327
BmiI	GGNNCC	3 cut(s)	129, 208, 249
BmrFI	CCNGG	4 cut(s)	211, 258, 292, 327
BmtI	GCTAGC	1 cut(s)	386
Bpu10I	CCTNAGC	1 cut(s)	5
BpuMI	CCSGG	3 cut(s)	211, 292, 327
Bsa29I	ATCGAT	1 cut(s)	360
Bsc4I	CCNNNNNNNGG	2 cut(s)	50, 257
Bse3DI	GCAATG	1 cut(s)	320
BseBI	CCWGG	1 cut(s)	258
BseCI	ATCGAT	1 cut(s)	360
BseGI	GGATG	1 cut(s)	243
BseLI	CCNNNNNNNGG	2 cut(s)	50, 257
BseMI	GCAATG	1 cut(s)	320
BseMII	CTCAG	1 cut(s)	11
BseRI	GAGGAG	1 cut(s)	90
BseXI	GCAGC	1 cut(s)	262
BseYI	CCCAGC	1 cut(s)	333
BshFI	GGCC	1 cut(s)	43
BshVI	ATCGAT	1 cut(s)	360
BsiSI	CCGG	3 cut(s)	210, 291, 326
BslI	CCNNNNNNNGG	2 cut(s)	50, 257
BsnI	GGCC	1 cut(s)	43
Bsp143I	GATC	5 cut(s)	56, 127, 206, 222, 299
BspACI	CCGC	6 cut(s)	51, 54, 123, 159, 178, 295
BspANI	GGCC	1 cut(s)	43
BspCNI	CTCAG	1 cut(s)	12
BspDI	ATCGAT	1 cut(s)	360
BspLI	GGNNCC	3 cut(s)	129, 208, 249
BspOI	GCTAGC	1 cut(s)	386
BspPI	GGATC	5 cut(s)	64, 122, 135, 201, 214
BsrDI	GCAATG	1 cut(s)	320
BssMI	GATC	5 cut(s)	56, 127, 206, 222, 299
BssSI	CACGAG	1 cut(s)	189
Bst2BI	CACGAG	1 cut(s)	189
Bst2UI	CCWGG	1 cut(s)	258
BstC8I	GCNNGC	1 cut(s)	384
BstDEI	CTNAG	2 cut(s)	5, 20
BstF5I	GGATG	1 cut(s)	243
BstHHI	GCGC	1 cut(s)	280
BstKTI	GATC	5 cut(s)	59, 130, 209, 225, 302
BstMBI	GATC	5 cut(s)	56, 127, 206, 222, 299
BstMWI	GCNNNNNNNGC	1 cut(s)	175
BstNI	CCWGG	1 cut(s)	258
BstSCI	CCNGG	4 cut(s)	209, 256, 290, 325
BstV1I	GCAGC	1 cut(s)	262
BstX2I	RGATCY	3 cut(s)	56, 127, 206
BstYI	RGATCY	3 cut(s)	56, 127, 206
Bsu15I	ATCGAT	1 cut(s)	360
BsuRI	GGCC	1 cut(s)	43
BsuTUI	ATCGAT	1 cut(s)	360
BtsCI	GGATG	1 cut(s)	243
BtsI	GCAGTG	3 cut(s)	287, 379, 393
BtsIMutI	CAGTG	3 cut(s)	287, 379, 393
Cac8I	GCNNGC	1 cut(s)	384
CfoI	GCGC	1 cut(s)	280
ClaI	ATCGAT	1 cut(s)	360
CviAII	CATG	3 cut(s)	47, 317, 408
CviJI	RGCY	7 cut(s)	43, 102, 142, 275, 333, 340, 382
CviKI_1	RGCY	7 cut(s)	43, 102, 142, 275, 333, 340, 382
DdeI	CTNAG	2 cut(s)	5, 20
DpnI	GATC	5 cut(s)	58, 129, 208, 224, 301
DpnII	GATC	5 cut(s)	56, 127, 206, 222, 299
EciI	GGCGGA	1 cut(s)	69
Eco57I	CTGAAG	1 cut(s)	291
EcoRII	CCWGG	1 cut(s)	256
EcoT22I	ATGCAT	1 cut(s)	322
FaeI	CATG	3 cut(s)	50, 320, 411
FaiI	YATR	5 cut(s)	48, 201, 318, 403, 409
FatI	CATG	3 cut(s)	46, 316, 407
FauI	CCCGC	2 cut(s)	116, 171
Fnu4HI	GCNGC	3 cut(s)	52, 276, 296
FokI	GGATG	1 cut(s)	250
Fsp4HI	GCNGC	3 cut(s)	52, 276, 296
FspBI	CTAG	2 cut(s)	99, 383
FspI	TGCGCA	1 cut(s)	279
GlaI	GCGC	1 cut(s)	279
GluI	GCNGC	3 cut(s)	52, 276, 296
GsaI	CCCAGC	1 cut(s)	337
HaeIII	GGCC	1 cut(s)	43
HapII	CCGG	3 cut(s)	210, 291, 326
HhaI	GCGC	1 cut(s)	280
Hin1II	CATG	3 cut(s)	50, 320, 411
Hin6I	GCGC	1 cut(s)	278
HinP1I	GCGC	1 cut(s)	278
HinfI	GANTC	1 cut(s)	392
HpaII	CCGG	3 cut(s)	210, 291, 326
HphI	GGTGA	2 cut(s)	365, 387
Hpy188I	TCNGA	1 cut(s)	21
Hpy188III	TCNNGA	1 cut(s)	220
HpyCH4IV	ACGT	1 cut(s)	173
HpyCH4V	TGCA	3 cut(s)	62, 320, 407
HpyF10VI	GCNNNNNNNGC	1 cut(s)	175
HpyF3I	CTNAG	2 cut(s)	5, 20
HpySE526I	ACGT	1 cut(s)	173
Hsp92II	CATG	3 cut(s)	50, 320, 411
HspAI	GCGC	1 cut(s)	278
Kzo9I	GATC	5 cut(s)	56, 127, 206, 222, 299
LpnPI	CCDG	7 cut(s)	223, 243, 270, 294, 304, 319, 339
Lsp1109I	GCAGC	1 cut(s)	262
MaeI	CTAG	2 cut(s)	99, 383
MaeII	ACGT	1 cut(s)	173
MaeIII	GTNAC	4 cut(s)	9, 213, 353, 393
MalI	GATC	5 cut(s)	58, 129, 208, 224, 301
MboI	GATC	5 cut(s)	56, 127, 206, 222, 299
MboII	GAAGA	2 cut(s)	294, 297
MflI	RGATCY	3 cut(s)	56, 127, 206
MluCI	AATT	2 cut(s)	64, 150
MlyI	GAGTC	1 cut(s)	401
MmeI	TCCRAC	1 cut(s)	215
MnlI	CCTC	7 cut(s)	17, 27, 54, 68, 101, 109, 220
Mph1103I	ATGCAT	1 cut(s)	322
MslI	CAYNNNNRTG	1 cut(s)	400
MspI	CCGG	3 cut(s)	210, 291, 326
MspR9I	CCNGG	4 cut(s)	211, 258, 292, 327
MvaI	CCWGG	1 cut(s)	258
MwoI	GCNNNNNNNGC	1 cut(s)	175
NciI	CCSGG	3 cut(s)	211, 292, 327
NdeII	GATC	5 cut(s)	56, 127, 206, 222, 299
NheI	GCTAGC	1 cut(s)	382
NlaIII	CATG	3 cut(s)	50, 320, 411
NlaIV	GGNNCC	3 cut(s)	129, 208, 249
NmuCI	GTSAC	3 cut(s)	213, 353, 393
NsbI	TGCGCA	1 cut(s)	279
NsiI	ATGCAT	1 cut(s)	322
PflMI	CCANNNNNTGG	1 cut(s)	257
PkrI	GCNGC	3 cut(s)	53, 277, 297
PleI	GAGTC	1 cut(s)	400
PpsI	GAGTC	1 cut(s)	400
Psp6I	CCWGG	1 cut(s)	256
PspFI	CCCAGC	1 cut(s)	333
PspGI	CCWGG	1 cut(s)	256
PspN4I	GGNNCC	3 cut(s)	129, 208, 249
PsuI	RGATCY	3 cut(s)	56, 127, 206
RseI	CAYNNNNRTG	1 cut(s)	400
SatI	GCNGC	3 cut(s)	52, 276, 296
Sau3AI	GATC	5 cut(s)	56, 127, 206, 222, 299
SchI	GAGTC	1 cut(s)	401
ScrFI	CCNGG	4 cut(s)	211, 258, 292, 327
SetI	ASST	8 cut(s)	11, 28, 32, 38, 144, 176, 231, 313
SmiMI	CAYNNNNRTG	1 cut(s)	400
Sse9I	AATT	2 cut(s)	64, 150
SsiI	CCGC	6 cut(s)	51, 54, 123, 159, 178, 295
SspMI	CTAG	2 cut(s)	99, 383
StyD4I	CCNGG	4 cut(s)	209, 256, 290, 325
TaiI	ACGT	1 cut(s)	176
TaqI	TCGA	3 cut(s)	225, 268, 360
TasI	AATT	2 cut(s)	64, 150
TauI	GCSGC	2 cut(s)	54, 298
TscAI	CASTG	3 cut(s)	287, 379, 393
TseFI	GTSAC	3 cut(s)	213, 353, 393
TseI	GCWGC	1 cut(s)	275
Tsp45I	GTSAC	3 cut(s)	213, 353, 393
TspDTI	ATGAA	1 cut(s)	305
TspGWI	ACGGA	1 cut(s)	260
TspRI	CASTG	3 cut(s)	287, 379, 393
Van91I	CCANNNNNTGG	1 cut(s)	257
XspI	CTAG	2 cut(s)	99, 383
Zsp2I	ATGCAT	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.