RLG00000023064

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0001534
Physical Location & Seq
Reverse (-)
17587856 .. 17588245
390 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023064

Sequence Viewer

Length: 390 bp
ATGCTTAGGTTACTCTCTCTGAGAGGTGGGTGGAGGCTGTGGCCTCTTGGCGGCGGCTCTGCAAATTGGGCTGGAGGATATGAGATTTCCCTCTCATCTGGTCGACGGGGGATTGAAGGCGGCGGGGCTCCTCATTGTCGGCTTCTCAAAATTTTGATTCTTGTTTTCTTGTTCGGGGTTGTGTGCTTTGGCAACAGCGATGGTACTTTTGGGCCGCACATGGCAACGGCAGTGGGATGTGTTCCTAGGCAATCTGGATCGGTGATGGTCCCTGAGTCGTGGCGCTTGGTGCTGTCTGAGCAGGAAATCTGGTGGTCGTGGCCGGTCGAGGTGCGGACTGGAGCTTCGAGCGGTGGCCTGGAGTGGATTCTCGACCTCTGTTGCTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

13.95

Weight (kDa)

7.66

Isoelectric Point (pI)

49.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 351
AccI GTMKAC 1 cut(s) 103
AciI CCGC 7 cut(s) 51, 54, 120, 123, 215, 334, 351
AclWI GGATC 1 cut(s) 265
AcoI YGGCCR 1 cut(s) 320
AcsI RAATTY 1 cut(s) 150
AfaI GTAC 1 cut(s) 205
AfiI CCNNNNNNNGG 1 cut(s) 50
AgsI TTSAA 1 cut(s) 116
AjnI CCWGG 1 cut(s) 357
AluBI AGCT 1 cut(s) 344
AluI AGCT 1 cut(s) 344
AlwI GGATC 1 cut(s) 265
AoxI GGCC 4 cut(s) 41, 212, 320, 355
ApoI RAATTY 1 cut(s) 150
ArsI GACNNNNNNTTYG 2 cut(s) 328, 360
AspA2I CCTAGG 1 cut(s) 245
AspLEI GCGC 1 cut(s) 285
AspS9I GGNCC 2 cut(s) 212, 268
AsuHPI GGTGA 1 cut(s) 274
AvaII GGWCC 1 cut(s) 268
AvrII CCTAGG 1 cut(s) 245
BanII GRGCYC 1 cut(s) 130
BccI CCATC 2 cut(s) 194, 259
BceAI ACGGC 1 cut(s) 243
BciT130I CCWGG 1 cut(s) 359
BfaI CTAG 1 cut(s) 246
BfoI RGCGCY 1 cut(s) 286
BisI GCNGC 4 cut(s) 52, 55, 121, 215
BlnI CCTAGG 1 cut(s) 245
BlsI GCNGC 4 cut(s) 53, 56, 122, 216
Bme1390I CCNGG 1 cut(s) 359
Bme18I GGWCC 1 cut(s) 268
BmgT120I GGNCC 2 cut(s) 212, 268
BmiI GGNNCC 2 cut(s) 129, 270
BmrFI CCNGG 1 cut(s) 359
BpmI CTGGAG 3 cut(s) 93, 360, 380
Bpu10I CCTNAGC 1 cut(s) 5
BsaJI CCNNGG 1 cut(s) 245
Bsc4I CCNNNNNNNGG 1 cut(s) 50
Bse118I RCCGGY 1 cut(s) 322
Bse1I ACTGG 1 cut(s) 343
BseBI CCWGG 1 cut(s) 359
BseDI CCNNGG 1 cut(s) 245
BseGI GGATG 1 cut(s) 242
BseLI CCNNNNNNNGG 1 cut(s) 50
BseMII CTCAG 3 cut(s) 11, 264, 288
BseNI ACTGG 1 cut(s) 343
BseRI GAGGAG 1 cut(s) 120
Bsh1285I CGRYCG 1 cut(s) 327
BshFI GGCC 4 cut(s) 43, 214, 322, 357
BsiEI CGRYCG 1 cut(s) 327
BsiSI CCGG 1 cut(s) 323
BslFI GGGAC 1 cut(s) 254
BslI CCNNNNNNNGG 1 cut(s) 50
BsmFI GGGAC 1 cut(s) 254
BsnI GGCC 4 cut(s) 43, 214, 322, 357
Bsp1286I GDGCHC 1 cut(s) 130
Bsp143I GATC 1 cut(s) 257
BspACI CCGC 7 cut(s) 51, 54, 120, 123, 215, 334, 351
BspANI GGCC 4 cut(s) 43, 214, 322, 357
BspCNI CTCAG 3 cut(s) 12, 265, 289
BspLI GGNNCC 2 cut(s) 129, 270
BspPI GGATC 1 cut(s) 265
BsrBI CCGCTC 1 cut(s) 351
BsrFI RCCGGY 1 cut(s) 322
BsrI ACTGG 1 cut(s) 343
BssAI RCCGGY 1 cut(s) 322
BssECI CCNNGG 1 cut(s) 245
BssMI GATC 1 cut(s) 257
BssT1I CCWWGG 1 cut(s) 245
Bst2UI CCWGG 1 cut(s) 359
BstDEI CTNAG 4 cut(s) 5, 20, 273, 297
BstF5I GGATG 1 cut(s) 242
BstH2I RGCGCY 1 cut(s) 286
BstHHI GCGC 1 cut(s) 285
BstKTI GATC 1 cut(s) 260
BstMBI GATC 1 cut(s) 257
BstMCI CGRYCG 1 cut(s) 327
BstMWI GCNNNNNNNGC 3 cut(s) 68, 289, 298
BstNI CCWGG 1 cut(s) 359
BstSCI CCNGG 1 cut(s) 357
BsuRI GGCC 4 cut(s) 43, 214, 322, 357
BtgZI GCGATG 1 cut(s) 213
BtsCI GGATG 1 cut(s) 242
BtsI GCAGTG 1 cut(s) 237
BtsIMutI CAGTG 1 cut(s) 237
CfoI GCGC 1 cut(s) 285
Cfr10I RCCGGY 1 cut(s) 322
Cfr13I GGNCC 2 cut(s) 212, 268
Csp6I GTAC 1 cut(s) 204
CspCI CAANNNNNGTGG 2 cut(s) 213, 248
CviAII CATG 1 cut(s) 220
CviQI GTAC 1 cut(s) 204
DdeI CTNAG 4 cut(s) 5, 20, 273, 297
DpnI GATC 1 cut(s) 259
DpnII GATC 1 cut(s) 257
EaeI YGGCCR 1 cut(s) 320
Eco130I CCWWGG 1 cut(s) 245
Eco24I GRGCYC 1 cut(s) 130
Eco47I GGWCC 1 cut(s) 268
EcoRII CCWGG 1 cut(s) 357
EcoT14I CCWWGG 1 cut(s) 245
EcoT38I GRGCYC 1 cut(s) 130
ErhI CCWWGG 1 cut(s) 245
FaeI CATG 1 cut(s) 223
FaiI YATR 2 cut(s) 81, 221
FaqI GGGAC 1 cut(s) 254
FatI CATG 1 cut(s) 219
FauI CCCGC 1 cut(s) 116
FblI GTMKAC 1 cut(s) 103
Fnu4HI GCNGC 4 cut(s) 52, 55, 121, 215
FokI GGATG 1 cut(s) 249
FriOI GRGCYC 1 cut(s) 130
Fsp4HI GCNGC 4 cut(s) 52, 55, 121, 215
FspBI CTAG 1 cut(s) 246
GlaI GCGC 1 cut(s) 284
GluI GCNGC 4 cut(s) 52, 55, 121, 215
GsuI CTGGAG 3 cut(s) 93, 360, 380
HaeII RGCGCY 1 cut(s) 286
HaeIII GGCC 4 cut(s) 43, 214, 322, 357
HapII CCGG 1 cut(s) 323
HhaI GCGC 1 cut(s) 285
Hin1II CATG 1 cut(s) 223
Hin6I GCGC 1 cut(s) 283
HinP1I GCGC 1 cut(s) 283
HincII GTYRAC 1 cut(s) 104
HindII GTYRAC 1 cut(s) 104
HinfI GANTC 3 cut(s) 157, 275, 367
HpaII CCGG 1 cut(s) 323
HphI GGTGA 1 cut(s) 274
Hpy166II GTNNAC 1 cut(s) 104
Hpy188I TCNGA 2 cut(s) 21, 298
Hpy188III TCNNGA 2 cut(s) 255, 371
Hpy8I GTNNAC 1 cut(s) 104
Hpy99I CGWCG 1 cut(s) 108
HpyAV CCTTC 1 cut(s) 110
HpyCH4V TGCA 1 cut(s) 62
HpyF10VI GCNNNNNNNGC 3 cut(s) 68, 289, 298
HpyF3I CTNAG 4 cut(s) 5, 20, 273, 297
Hsp92II CATG 1 cut(s) 223
HspAI GCGC 1 cut(s) 283
Kzo9I GATC 1 cut(s) 257
LmnI GCTCC 2 cut(s) 133, 341
MaeI CTAG 1 cut(s) 246
MaeIII GTNAC 1 cut(s) 9
MalI GATC 1 cut(s) 259
MbiI CCGCTC 1 cut(s) 351
MboI GATC 1 cut(s) 257
MhlI GDGCHC 1 cut(s) 130
MluCI AATT 2 cut(s) 64, 150
MlyI GAGTC 1 cut(s) 284
MnlI CCTC 8 cut(s) 17, 27, 54, 68, 101, 141, 322, 386
MspI CCGG 1 cut(s) 323
MspR9I CCNGG 1 cut(s) 359
MvaI CCWGG 1 cut(s) 359
MwoI GCNNNNNNNGC 3 cut(s) 68, 289, 298
NdeII GATC 1 cut(s) 257
NlaIII CATG 1 cut(s) 223
NlaIV GGNNCC 2 cut(s) 129, 270
PfeI GAWTC 2 cut(s) 157, 367
PkrI GCNGC 4 cut(s) 53, 56, 122, 216
PleI GAGTC 1 cut(s) 283
PpsI GAGTC 1 cut(s) 283
Psp6I CCWGG 1 cut(s) 357
PspGI CCWGG 1 cut(s) 357
PspN4I GGNNCC 2 cut(s) 129, 270
PspPI GGNCC 2 cut(s) 212, 268
RsaI GTAC 1 cut(s) 205
RsaNI GTAC 1 cut(s) 204
SalI GTCGAC 1 cut(s) 102
SatI GCNGC 4 cut(s) 52, 55, 121, 215
Sau3AI GATC 1 cut(s) 257
Sau96I GGNCC 2 cut(s) 212, 268
SchI GAGTC 1 cut(s) 284
ScrFI CCNGG 1 cut(s) 359
SduI GDGCHC 1 cut(s) 130
SetI ASST 5 cut(s) 11, 28, 333, 346, 378
SinI GGWCC 1 cut(s) 268
Sse9I AATT 2 cut(s) 64, 150
SsiI CCGC 7 cut(s) 51, 54, 120, 123, 215, 334, 351
SspMI CTAG 1 cut(s) 246
StyD4I CCNGG 1 cut(s) 357
StyI CCWWGG 1 cut(s) 245
TaqI TCGA 4 cut(s) 103, 327, 347, 372
TasI AATT 2 cut(s) 64, 150
TauI GCSGC 4 cut(s) 54, 57, 123, 217
TfiI GAWTC 2 cut(s) 157, 367
TscAI CASTG 1 cut(s) 237
TspRI CASTG 1 cut(s) 237
VpaK11BI GGWCC 1 cut(s) 268
XapI RAATTY 1 cut(s) 150
XmaJI CCTAGG 1 cut(s) 245
XmiI GTMKAC 1 cut(s) 103
XspI CTAG 1 cut(s) 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.