Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001534

Physical Location & Seq

Genomic Coordinates Forward (+)

3956959 .. 3957423

Gene Structure 465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026573

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGTTTAGTCGTTTGGGGATTGAGGATGACGGGGTTCCCCGTCGTCGGATTCTCAAAATTGGGGGCATTGAAGAGCTTCTGTCTCGGGTGGCTTTTCAAGGCAGCAGCAATGGTTTCGGGTCTTTCTTGGCCCGGGATGTTTGGGAAGGTTTGGCTCGTCGGGGAGCGGAGTGGAGCGCCAGGGGGAGGTCTGCCTTCTTGGGATTTCGTTCTGTGCCAGGTGGCTGGGCGGTGACGATGGCGGGTGACTGGTCGTCGTACAAGGAGGCTTGCGTGGGCGAGCTAACTGATGCAGCGCTAATCCGTGCTGGAGTGGGCCGGGGTTGGCTGCTGCTGGGAGAGGCGACGATGGCGACGTCCAGCGGGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

124

Amino Acids

13.08

Weight (kDa)

9.17

Isoelectric Point (pI)

52.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001534)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33467 AT4G33467
fragaria_vesca	FvH4_1g13550
malus_domestica	MD02G1150700.v1.1 MD15G1265300.v1.1
prunus_persica	Prupe.7G152300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0101941 RchiOBHm_Chr7g0231621
rosa_laevigata	RLG00000003218 RLG00000003459 RLG00000005525 RLG00000005735 RLG00000008080 RLG00000009250 RLG00000012890 RLG00000014921 RLG00000016044 RLG00000017118 RLG00000017262 RLG00000018139 RLG00000018892 RLG00000019095 RLG00000020815 RLG00000023064 RLG00000024324 RLG00000024611 RLG00000024901 RLG00000025131 RLG00000026573 RLG00000028471 RLG00000029991 RLG00000030471 RLG00000033464 RLG00000033615
rosa_multiflora	Rmu_sc0000697.1_g000010 Rmu_sc0004767.1_g000002 Rmu_sc0012270.1_g000006
rosa_roxburghii	Rroxscaffold_2G00132820 Rroxscaffold_2G00140910 Rroxscaffold_3G00223440 Rroxscaffold_3G00265480 Rroxscaffold_5G00344290
rosa_rugosa	Rorug02G0103200 Rorug05G0210700 Rorug06G0152900
rosa_samantha	Rh2AG151300 Rh2BG156800 Rh2CG156600 Rh2DG156900 Rh6AG272100
rosa_wichuraiana	Rw2G011810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	359
AccBSI	CCGCTC	1 cut(s)	167
AciI	CCGC	4 cut(s)	167, 230, 242, 363
AcyI	GRCGYC	1 cut(s)	356
AfaI	GTAC	1 cut(s)	260
AfeI	AGCGCT	1 cut(s)	297
AfiI	CCNNNNNNNGG	2 cut(s)	45, 186
AgsI	TTSAA	2 cut(s)	71, 98
AhdI	GACNNNNNGTC	1 cut(s)	253
AjnI	CCWGG	2 cut(s)	179, 217
AluBI	AGCT	2 cut(s)	76, 283
AluI	AGCT	2 cut(s)	76, 283
Alw26I	GTCTC	1 cut(s)	87
Ama87I	CYCGRG	2 cut(s)	84, 132
Aor51HI	AGCGCT	1 cut(s)	297
AoxI	GGCC	2 cut(s)	129, 316
ApeKI	GCWGC	5 cut(s)	102, 105, 293, 328, 331
Asp700I	GAANNNNTTC	1 cut(s)	75
AspLEI	GCGC	2 cut(s)	179, 298
AspS9I	GGNCC	2 cut(s)	130, 316
AsuC2I	CCSGG	3 cut(s)	133, 134, 320
AsuHPI	GGTGA	2 cut(s)	244, 257
AvaI	CYCGRG	2 cut(s)	84, 132
BbvI	GCAGC	5 cut(s)	114, 117, 305, 315, 318
BccI	CCATC	2 cut(s)	232, 343
BcgI	CGANNNNNNTGC	2 cut(s)	97, 131
BciT130I	CCWGG	2 cut(s)	181, 219
BcnI	CCSGG	3 cut(s)	133, 134, 320
BcoDI	GTCTC	1 cut(s)	87
BfoI	RGCGCY	2 cut(s)	180, 299
BisI	GCNGC	5 cut(s)	103, 106, 294, 329, 332
BlsI	GCNGC	5 cut(s)	104, 107, 295, 330, 333
Bme1390I	CCNGG	5 cut(s)	133, 134, 181, 219, 320
BmeRI	GACNNNNNGTC	1 cut(s)	253
BmeT110I	CYCGRG	2 cut(s)	84, 132
BmgT120I	GGNCC	2 cut(s)	130, 316
BmiI	GGNNCC	1 cut(s)	36
BmrFI	CCNGG	5 cut(s)	133, 134, 181, 219, 320
BmsI	GCATC	1 cut(s)	280
BpmI	CTGGAG	1 cut(s)	330
BpuMI	CCSGG	3 cut(s)	133, 134, 320
BsaHI	GRCGYC	1 cut(s)	356
BsaJI	CCNNGG	3 cut(s)	132, 180, 319
Bsc4I	CCNNNNNNNGG	2 cut(s)	45, 186
Bse1I	ACTGG	1 cut(s)	254
Bse3DI	GCAATG	1 cut(s)	115
BseBI	CCWGG	2 cut(s)	181, 219
BseDI	CCNNGG	3 cut(s)	132, 180, 319
BseGI	GGATG	2 cut(s)	31, 142
BseLI	CCNNNNNNNGG	2 cut(s)	45, 186
BseMI	GCAATG	1 cut(s)	115
BseNI	ACTGG	1 cut(s)	254
BseXI	GCAGC	5 cut(s)	114, 117, 305, 315, 318
BseYI	CCCAGC	2 cut(s)	225, 334
BshFI	GGCC	2 cut(s)	131, 318
BsiHKCI	CYCGRG	2 cut(s)	84, 132
BsiSI	CCGG	2 cut(s)	133, 319
BslI	CCNNNNNNNGG	2 cut(s)	45, 186
BsmAI	GTCTC	1 cut(s)	87
BsnI	GGCC	2 cut(s)	131, 318
BsoBI	CYCGRG	2 cut(s)	84, 132
BspACI	CCGC	4 cut(s)	167, 230, 242, 363
BspANI	GGCC	2 cut(s)	131, 318
BspLI	GGNNCC	1 cut(s)	36
BspQI	GCTCTTC	1 cut(s)	66
BsrBI	CCGCTC	1 cut(s)	167
BsrDI	GCAATG	1 cut(s)	115
BsrI	ACTGG	1 cut(s)	254
BssECI	CCNNGG	3 cut(s)	132, 180, 319
BssNI	GRCGYC	1 cut(s)	356
Bst2UI	CCWGG	2 cut(s)	181, 219
Bst6I	CTCTTC	1 cut(s)	66
BstACI	GRCGYC	1 cut(s)	356
BstC8I	GCNNGC	2 cut(s)	271, 281
BstF5I	GGATG	2 cut(s)	31, 142
BstH2I	RGCGCY	2 cut(s)	180, 299
BstHHI	GCGC	2 cut(s)	179, 298
BstMAI	GTCTC	1 cut(s)	87
BstMWI	GCNNNNNNNGC	1 cut(s)	350
BstNI	CCWGG	2 cut(s)	181, 219
BstSCI	CCNGG	5 cut(s)	131, 132, 179, 217, 318
BstV1I	GCAGC	5 cut(s)	114, 117, 305, 315, 318
BstXI	CCANNNNNNTGG	1 cut(s)	225
BsuRI	GGCC	2 cut(s)	131, 318
BtsCI	GGATG	2 cut(s)	31, 142
Cac8I	GCNNGC	2 cut(s)	271, 281
CfoI	GCGC	2 cut(s)	179, 298
Cfr13I	GGNCC	2 cut(s)	130, 316
Cfr9I	CCCGGG	1 cut(s)	132
Csp6I	GTAC	1 cut(s)	259
CviJI	RGCY	9 cut(s)	76, 92, 131, 155, 225, 269, 283, 318, 328
CviKI_1	RGCY	9 cut(s)	76, 92, 131, 155, 225, 269, 283, 318, 328
CviQI	GTAC	1 cut(s)	259
DriI	GACNNNNNGTC	1 cut(s)	253
Eam1104I	CTCTTC	1 cut(s)	66
Eam1105I	GACNNNNNGTC	1 cut(s)	253
EarI	CTCTTC	1 cut(s)	66
Eco47III	AGCGCT	1 cut(s)	297
Eco88I	CYCGRG	2 cut(s)	84, 132
EcoRII	CCWGG	2 cut(s)	179, 217
FauI	CCCGC	2 cut(s)	235, 356
Fnu4HI	GCNGC	5 cut(s)	103, 106, 294, 329, 332
FokI	GGATG	2 cut(s)	38, 149
Fsp4HI	GCNGC	5 cut(s)	103, 106, 294, 329, 332
GlaI	GCGC	2 cut(s)	178, 297
GluI	GCNGC	5 cut(s)	103, 106, 294, 329, 332
GsaI	CCCAGC	2 cut(s)	229, 338
GsuI	CTGGAG	1 cut(s)	330
HaeII	RGCGCY	2 cut(s)	180, 299
HaeIII	GGCC	2 cut(s)	131, 318
HapII	CCGG	2 cut(s)	133, 319
HhaI	GCGC	2 cut(s)	179, 298
Hin1I	GRCGYC	1 cut(s)	356
Hin6I	GCGC	2 cut(s)	177, 296
HinP1I	GCGC	2 cut(s)	177, 296
HinfI	GANTC	1 cut(s)	49
HpaII	CCGG	2 cut(s)	133, 319
HphI	GGTGA	2 cut(s)	244, 257
Hpy188I	TCNGA	1 cut(s)	48
Hpy99I	CGWCG	6 cut(s)	45, 48, 162, 259, 349, 358
HpyAV	CCTTC	2 cut(s)	140, 205
HpyCH4IV	ACGT	1 cut(s)	356
HpyCH4V	TGCA	1 cut(s)	293
HpyF10VI	GCNNNNNNNGC	1 cut(s)	350
HpySE526I	ACGT	1 cut(s)	356
Hsp92I	GRCGYC	1 cut(s)	356
HspAI	GCGC	2 cut(s)	177, 296
LguI	GCTCTTC	1 cut(s)	66
LmnI	GCTCC	2 cut(s)	164, 174
Lsp1109I	GCAGC	5 cut(s)	114, 117, 305, 315, 318
LweI	GCATC	1 cut(s)	280
MaeII	ACGT	1 cut(s)	356
MaeIII	GTNAC	2 cut(s)	232, 245
MbiI	CCGCTC	1 cut(s)	167
MboII	GAAGA	1 cut(s)	83
MluCI	AATT	1 cut(s)	57
MmeI	TCCRAC	1 cut(s)	26
MnlI	CCTC	4 cut(s)	16, 180, 259, 334
MroXI	GAANNNNTTC	1 cut(s)	75
MspA1I	CMGCKG	1 cut(s)	363
MspI	CCGG	2 cut(s)	133, 319
MspR9I	CCNGG	5 cut(s)	133, 134, 181, 219, 320
MvaI	CCWGG	2 cut(s)	181, 219
MwoI	GCNNNNNNNGC	1 cut(s)	350
NciI	CCSGG	3 cut(s)	133, 134, 320
NlaIV	GGNNCC	1 cut(s)	36
NmuCI	GTSAC	2 cut(s)	232, 245
PciSI	GCTCTTC	1 cut(s)	66
PcsI	WCGNNNNNNNCGW	1 cut(s)	353
PdmI	GAANNNNTTC	1 cut(s)	75
PfeI	GAWTC	1 cut(s)	49
PkrI	GCNGC	5 cut(s)	104, 107, 295, 330, 333
Psp6I	CCWGG	2 cut(s)	179, 217
PspFI	CCCAGC	2 cut(s)	225, 334
PspGI	CCWGG	2 cut(s)	179, 217
PspN4I	GGNNCC	1 cut(s)	36
PspPI	GGNCC	2 cut(s)	130, 316
RsaI	GTAC	1 cut(s)	260
RsaNI	GTAC	1 cut(s)	259
SapI	GCTCTTC	1 cut(s)	66
SatI	GCNGC	5 cut(s)	103, 106, 294, 329, 332
Sau96I	GGNCC	2 cut(s)	130, 316
ScrFI	CCNGG	5 cut(s)	133, 134, 181, 219, 320
SetI	ASST	6 cut(s)	78, 151, 191, 223, 285, 359
SfaNI	GCATC	1 cut(s)	280
SmaI	CCCGGG	1 cut(s)	134
Sse9I	AATT	1 cut(s)	57
SsiI	CCGC	4 cut(s)	167, 230, 242, 363
StyD4I	CCNGG	5 cut(s)	131, 132, 179, 217, 318
TaiI	ACGT	1 cut(s)	359
TasI	AATT	1 cut(s)	57
TfiI	GAWTC	1 cut(s)	49
TseFI	GTSAC	2 cut(s)	232, 245
TseI	GCWGC	5 cut(s)	102, 105, 293, 328, 331
Tsp45I	GTSAC	2 cut(s)	232, 245
TspGWI	ACGGA	1 cut(s)	293
TspMI	CCCGGG	1 cut(s)	132
XmaI	CCCGGG	1 cut(s)	132
XmnI	GAANNNNTTC	1 cut(s)	75
ZraI	GACGTC	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.