Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001534

Physical Location & Seq

Genomic Coordinates Forward (+)

29621133 .. 29621906

Gene Structure 774 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033615

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGCTTAGGTTACTCTCTCTGAGAGGTAGGTGGAGGAAGTGGCCTCCTAGCGGTGGTTCTGCAAATTGGGCTGGACGAGATGGGTTTTCTCTCTCATCTGGTCGCCGGGAGATTGAAGGCGACGGGGTTTTTCGTTGTCGGCGTCTCAAAATTTTATTTCTTGTTCTTTTGTTCGGGGTTGGGTGCCTTGGTAGCAGCGAAGGAGATTCTTGGTCGCGTGAGGATGATCTGGTGGCTGGTGGTGGCCGGGTTGCGGACTGGAGCTCCGGGCTGTGGCCTGGGGTGGCATCTCGACTTCTGTTGATGGCGGCTGAGGATGGCGATGTCAACCTGCCTTGGGGTTGCGACGACGATGATCTCTTGCTAAAGGGACGGTCTGGTGTTCTTAGACTAGGGTTGGCTGCGGCTTGGTGCAGTGAAGGTTACGGCAGGCAGCAGGGTCAGATCTTCTTGACCGGCGTCGTTGAAGGGAGGTGGACTAGTGGTTGGCAGTTGTTGGATGGGGTGTCCAAGTGGTTGGGTGGCCTCATCAATTCCATCTGGGCTTGGTATTCTTTTGGGCCTCTATCTGCTAGGGTTTCATGTTTGGGTCTGGGCCTATTTCGTTGGGCTTGGATTTCATTTATCTTTTACTATTTTTATGTTGTAAAGACTCTCTTTCCTCTGGGGAAGGAGTTCATAGGATCTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

231

Amino Acids

25.41

Weight (kDa)

8.89

Isoelectric Point (pI)

48.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001534)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33467 AT4G33467
fragaria_vesca	FvH4_1g13550
malus_domestica	MD02G1150700.v1.1 MD15G1265300.v1.1
prunus_persica	Prupe.7G152300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0101941 RchiOBHm_Chr7g0231621
rosa_laevigata	RLG00000003218 RLG00000003459 RLG00000005525 RLG00000005735 RLG00000008080 RLG00000009250 RLG00000012890 RLG00000014921 RLG00000016044 RLG00000017118 RLG00000017262 RLG00000018139 RLG00000018892 RLG00000019095 RLG00000020815 RLG00000023064 RLG00000024324 RLG00000024611 RLG00000024901 RLG00000025131 RLG00000026573 RLG00000028471 RLG00000029991 RLG00000030471 RLG00000033464 RLG00000033615
rosa_multiflora	Rmu_sc0000697.1_g000010 Rmu_sc0004767.1_g000002 Rmu_sc0012270.1_g000006
rosa_roxburghii	Rroxscaffold_2G00132820 Rroxscaffold_2G00140910 Rroxscaffold_3G00223440 Rroxscaffold_3G00265480 Rroxscaffold_5G00344290
rosa_rugosa	Rorug02G0103200 Rorug05G0210700 Rorug06G0152900
rosa_samantha	Rh2AG151300 Rh2BG156800 Rh2CG156600 Rh2DG156900 Rh6AG272100
rosa_wichuraiana	Rw2G011810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	339
AccB1I	GGYRCC	1 cut(s)	183
AccII	CGCG	1 cut(s)	217
AciI	CCGC	4 cut(s)	51, 254, 308, 404
AclWI	GGATC	1 cut(s)	691
AcoI	YGGCCR	1 cut(s)	244
AcsI	RAATTY	1 cut(s)	150
AcyI	GRCGYC	2 cut(s)	142, 459
AfiI	CCNNNNNNNGG	5 cut(s)	50, 53, 253, 273, 337
AgsI	TTSAA	2 cut(s)	116, 467
AhlI	ACTAGT	1 cut(s)	479
AjnI	CCWGG	1 cut(s)	277
AluBI	AGCT	1 cut(s)	264
AluI	AGCT	1 cut(s)	264
Alw21I	GWGCWC	1 cut(s)	266
Alw26I	GTCTC	1 cut(s)	149
AlwI	GGATC	1 cut(s)	691
AoxI	GGCC	6 cut(s)	41, 244, 275, 523, 560, 595
ApeKI	GCWGC	3 cut(s)	195, 401, 433
ApoI	RAATTY	1 cut(s)	150
Asp700I	GAANNNNTTC	1 cut(s)	674
AspS9I	GGNCC	2 cut(s)	560, 595
AsuC2I	CCSGG	3 cut(s)	107, 248, 268
BanI	GGYRCC	1 cut(s)	183
BanII	GRGCYC	1 cut(s)	266
Bbv12I	GWGCWC	1 cut(s)	266
BbvCI	CCTCAGC	1 cut(s)	312
BbvI	GCAGC	3 cut(s)	207, 388, 445
BccI	CCATC	5 cut(s)	74, 298, 311, 494, 545
BceAI	ACGGC	1 cut(s)	442
BciT130I	CCWGG	1 cut(s)	279
BcnI	CCSGG	3 cut(s)	107, 248, 268
BcoDI	GTCTC	1 cut(s)	149
BcuI	ACTAGT	1 cut(s)	479
BfaI	CTAG	4 cut(s)	48, 392, 480, 573
BfuAI	ACCTGC	1 cut(s)	339
BglII	AGATCT	1 cut(s)	444
BisI	GCNGC	5 cut(s)	196, 309, 402, 405, 434
BlsI	GCNGC	5 cut(s)	197, 310, 403, 406, 435
Bme1390I	CCNGG	4 cut(s)	107, 248, 268, 279
BmgT120I	GGNCC	2 cut(s)	560, 595
BmiI	GGNNCC	1 cut(s)	185
BmrFI	CCNGG	4 cut(s)	107, 248, 268, 279
BmsI	GCATC	1 cut(s)	296
BoxI	GACNNNNGTC	1 cut(s)	458
BpmI	CTGGAG	1 cut(s)	280
Bpu10I	CCTNAGC	2 cut(s)	5, 312
BpuMI	CCSGG	3 cut(s)	107, 248, 268
BsaHI	GRCGYC	2 cut(s)	142, 459
BsaJI	CCNNGG	3 cut(s)	187, 278, 335
BsaXI	ACNNNNNCTCC	2 cut(s)	248, 278
Bsc4I	CCNNNNNNNGG	5 cut(s)	50, 53, 253, 273, 337
Bse118I	RCCGGY	1 cut(s)	455
Bse1I	ACTGG	1 cut(s)	263
BseBI	CCWGG	1 cut(s)	279
BseDI	CCNNGG	3 cut(s)	187, 278, 335
BseGI	GGATG	3 cut(s)	229, 322, 505
BseLI	CCNNNNNNNGG	5 cut(s)	50, 53, 253, 273, 337
BseMII	CTCAG	2 cut(s)	11, 303
BseNI	ACTGG	1 cut(s)	263
BseXI	GCAGC	3 cut(s)	207, 388, 445
BsgI	GTGCAG	1 cut(s)	433
Bsh1236I	CGCG	1 cut(s)	217
BshFI	GGCC	6 cut(s)	43, 246, 277, 525, 562, 597
BshNI	GGYRCC	1 cut(s)	183
BsiHKAI	GWGCWC	1 cut(s)	266
BsiSI	CCGG	4 cut(s)	106, 247, 267, 456
BslFI	GGGAC	1 cut(s)	384
BslI	CCNNNNNNNGG	5 cut(s)	50, 53, 253, 273, 337
BsmAI	GTCTC	1 cut(s)	149
BsmBI	CGTCTC	1 cut(s)	149
BsmFI	GGGAC	1 cut(s)	384
BsnI	GGCC	6 cut(s)	43, 246, 277, 525, 562, 597
Bsp1286I	GDGCHC	1 cut(s)	266
Bsp143I	GATC	4 cut(s)	226, 355, 444, 683
BspACI	CCGC	4 cut(s)	51, 254, 308, 404
BspANI	GGCC	6 cut(s)	43, 246, 277, 525, 562, 597
BspCNI	CTCAG	2 cut(s)	12, 304
BspFNI	CGCG	1 cut(s)	217
BspLI	GGNNCC	1 cut(s)	185
BspMI	ACCTGC	1 cut(s)	339
BspPI	GGATC	1 cut(s)	691
BspT107I	GGYRCC	1 cut(s)	183
BsrFI	RCCGGY	1 cut(s)	455
BsrI	ACTGG	1 cut(s)	263
BssAI	RCCGGY	1 cut(s)	455
BssECI	CCNNGG	3 cut(s)	187, 278, 335
BssMI	GATC	4 cut(s)	226, 355, 444, 683
BssNI	GRCGYC	2 cut(s)	142, 459
BssT1I	CCWWGG	2 cut(s)	187, 335
Bst2UI	CCWGG	1 cut(s)	279
Bst4CI	ACNGT	1 cut(s)	375
BstACI	GRCGYC	2 cut(s)	142, 459
BstC8I	GCNNGC	1 cut(s)	431
BstDEI	CTNAG	4 cut(s)	5, 20, 312, 386
BstF5I	GGATG	3 cut(s)	229, 322, 505
BstFNI	CGCG	1 cut(s)	217
BstKTI	GATC	4 cut(s)	229, 358, 447, 686
BstMAI	GTCTC	1 cut(s)	149
BstMBI	GATC	4 cut(s)	226, 355, 444, 683
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 192
BstNI	CCWGG	1 cut(s)	279
BstPAI	GACNNNNGTC	1 cut(s)	458
BstSCI	CCNGG	4 cut(s)	105, 246, 266, 277
BstUI	CGCG	1 cut(s)	217
BstV1I	GCAGC	3 cut(s)	207, 388, 445
BstX2I	RGATCY	2 cut(s)	444, 683
BstXI	CCANNNNNNTGG	1 cut(s)	517
BstYI	RGATCY	2 cut(s)	444, 683
BsuRI	GGCC	6 cut(s)	43, 246, 277, 525, 562, 597
BtgZI	GCGATG	1 cut(s)	336
BtsCI	GGATG	3 cut(s)	229, 322, 505
BtsI	GCAGTG	1 cut(s)	421
BtsIMutI	CAGTG	1 cut(s)	421
BveI	ACCTGC	1 cut(s)	339
Cac8I	GCNNGC	1 cut(s)	431
Cfr10I	RCCGGY	1 cut(s)	455
Cfr13I	GGNCC	2 cut(s)	560, 595
CseI	GACGC	2 cut(s)	131, 448
CviAII	CATG	1 cut(s)	582
DdeI	CTNAG	4 cut(s)	5, 20, 312, 386
DpnI	GATC	4 cut(s)	228, 357, 446, 685
DpnII	GATC	4 cut(s)	226, 355, 444, 683
EaeI	YGGCCR	1 cut(s)	244
Ecl136II	GAGCTC	1 cut(s)	264
Eco130I	CCWWGG	2 cut(s)	187, 335
Eco24I	GRGCYC	1 cut(s)	266
Eco53kI	GAGCTC	1 cut(s)	264
EcoICRI	GAGCTC	1 cut(s)	264
EcoRII	CCWGG	1 cut(s)	277
EcoT14I	CCWWGG	2 cut(s)	187, 335
EcoT38I	GRGCYC	1 cut(s)	266
ErhI	CCWWGG	2 cut(s)	187, 335
Esp3I	CGTCTC	1 cut(s)	149
FaeI	CATG	1 cut(s)	585
FaiI	YATR	3 cut(s)	583, 642, 680
FalI	AAGNNNNNCTT	2 cut(s)	641, 673
FaqI	GGGAC	1 cut(s)	384
FatI	CATG	1 cut(s)	581
Fnu4HI	GCNGC	5 cut(s)	196, 309, 402, 405, 434
FokI	GGATG	3 cut(s)	236, 329, 512
FriOI	GRGCYC	1 cut(s)	266
Fsp4HI	GCNGC	5 cut(s)	196, 309, 402, 405, 434
FspBI	CTAG	4 cut(s)	48, 392, 480, 573
GluI	GCNGC	5 cut(s)	196, 309, 402, 405, 434
GsuI	CTGGAG	1 cut(s)	280
HaeIII	GGCC	6 cut(s)	43, 246, 277, 525, 562, 597
HapII	CCGG	4 cut(s)	106, 247, 267, 456
HgaI	GACGC	2 cut(s)	131, 448
Hin1I	GRCGYC	2 cut(s)	142, 459
Hin1II	CATG	1 cut(s)	585
HincII	GTYRAC	1 cut(s)	328
HindII	GTYRAC	1 cut(s)	328
HinfI	GANTC	2 cut(s)	206, 652
HpaII	CCGG	4 cut(s)	106, 247, 267, 456
Hpy166II	GTNNAC	2 cut(s)	328, 477
Hpy188I	TCNGA	3 cut(s)	21, 444, 692
Hpy188III	TCNNGA	2 cut(s)	291, 451
Hpy8I	GTNNAC	2 cut(s)	328, 477
Hpy99I	CGWCG	4 cut(s)	125, 350, 353, 464
HpyAV	CCTTC	5 cut(s)	110, 194, 413, 461, 664
HpyCH4III	ACNGT	1 cut(s)	375
HpyCH4V	TGCA	2 cut(s)	62, 414
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 192
HpyF3I	CTNAG	4 cut(s)	5, 20, 312, 386
Hsp92I	GRCGYC	2 cut(s)	142, 459
Hsp92II	CATG	1 cut(s)	585
Kzo9I	GATC	4 cut(s)	226, 355, 444, 683
LmnI	GCTCC	2 cut(s)	261, 269
Lsp1109I	GCAGC	3 cut(s)	207, 388, 445
LweI	GCATC	1 cut(s)	296
MaeI	CTAG	4 cut(s)	48, 392, 480, 573
MaeIII	GTNAC	2 cut(s)	9, 422
MalI	GATC	4 cut(s)	228, 357, 446, 685
MboI	GATC	4 cut(s)	226, 355, 444, 683
MboII	GAAGA	1 cut(s)	439
MflI	RGATCY	2 cut(s)	444, 683
MhlI	GDGCHC	1 cut(s)	266
MluCI	AATT	3 cut(s)	64, 150, 532
MlyI	GAGTC	1 cut(s)	646
MmeI	TCCRAC	1 cut(s)	477
MnlI	CCTC	9 cut(s)	17, 27, 54, 214, 307, 465, 536, 573, 672
MroXI	GAANNNNTTC	1 cut(s)	674
MspI	CCGG	4 cut(s)	106, 247, 267, 456
MspR9I	CCNGG	4 cut(s)	107, 248, 268, 279
MvaI	CCWGG	1 cut(s)	279
MvnI	CGCG	1 cut(s)	217
MwoI	GCNNNNNNNGC	2 cut(s)	68, 192
NciI	CCSGG	3 cut(s)	107, 248, 268
NdeII	GATC	4 cut(s)	226, 355, 444, 683
NlaIII	CATG	1 cut(s)	585
NlaIV	GGNNCC	1 cut(s)	185
PcsI	WCGNNNNNNNCGW	1 cut(s)	139
PdmI	GAANNNNTTC	1 cut(s)	674
PfeI	GAWTC	1 cut(s)	206
PkrI	GCNGC	5 cut(s)	197, 310, 403, 406, 435
PleI	GAGTC	1 cut(s)	646
PpsI	GAGTC	1 cut(s)	646
PshAI	GACNNNNGTC	1 cut(s)	458
Psp124BI	GAGCTC	1 cut(s)	266
Psp6I	CCWGG	1 cut(s)	277
PspGI	CCWGG	1 cut(s)	277
PspN4I	GGNNCC	1 cut(s)	185
PspPI	GGNCC	2 cut(s)	560, 595
PsuI	RGATCY	2 cut(s)	444, 683
SacI	GAGCTC	1 cut(s)	266
SatI	GCNGC	5 cut(s)	196, 309, 402, 405, 434
Sau3AI	GATC	4 cut(s)	226, 355, 444, 683
Sau96I	GGNCC	2 cut(s)	560, 595
SchI	GAGTC	1 cut(s)	646
ScrFI	CCNGG	4 cut(s)	107, 248, 268, 279
SduI	GDGCHC	1 cut(s)	266
SetI	ASST	7 cut(s)	11, 28, 32, 266, 333, 424, 476
SfaNI	GCATC	1 cut(s)	296
SpeI	ACTAGT	1 cut(s)	479
Sse9I	AATT	3 cut(s)	64, 150, 532
SsiI	CCGC	4 cut(s)	51, 254, 308, 404
SspMI	CTAG	4 cut(s)	48, 392, 480, 573
SstI	GAGCTC	1 cut(s)	266
StyD4I	CCNGG	4 cut(s)	105, 246, 266, 277
StyI	CCWWGG	2 cut(s)	187, 335
TaaI	ACNGT	1 cut(s)	375
TaqI	TCGA	1 cut(s)	292
TasI	AATT	3 cut(s)	64, 150, 532
TauI	GCSGC	2 cut(s)	311, 407
TfiI	GAWTC	1 cut(s)	206
TscAI	CASTG	1 cut(s)	421
TseI	GCWGC	3 cut(s)	195, 401, 433
TspDTI	ATGAA	3 cut(s)	570, 609, 667
TspRI	CASTG	1 cut(s)	421
XapI	RAATTY	1 cut(s)	150
XmnI	GAANNNNTTC	1 cut(s)	674
XspI	CTAG	4 cut(s)	48, 392, 480, 573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.