Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001534

Physical Location & Seq

Genomic Coordinates Reverse (-)

42353917 .. 42354544

Gene Structure 628 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018892

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGTCTAGGTTACTCTCTCTGAGAGGTAGGTGGAGGCCTTGGCCTCCGGGTGGTGGTTCTGCAAATTGGGTTAGAGGAGATGTGGTTTCCTTCTCATCTAGTCGCTGGGGGATTGAGGATGGCGGGGTTCCCCGTCGTCGGATTCTCAAAATTGGGGGCAATGAAGAGCTTCTATCTCGGGTGGCTTTTCACGGTAGCGGCAATGGTTTCGGGTCTTTCTTGACTCGGGATGTTTTGGAAGGTTTGGCTCGTCGGGTCGCGAAGTGGGCACCAGGGGGAGTTGCCGTACAAGGAGGCTTGCGCGGTCGAGCTACCAGATGCAGCACTGATCCGTACTGGAGCGAGTTTGGTTGCTGCTGGGAGAGGCGACGATGGCGACGACGGTGGATGACCTCCCAGTCTGGCGTCGTCGACTGGAGGCGGTCTGGTGTGCTGCCGTACTTGATTTGGACGCCCATGAGTTTGGGTGGCCTTAGCAGGTTCAGTTGGGCTTGGAACTCTTCTGGGCCTAGTGCTAGGGTTTCCCAGTCTTTTGGGCTTCTGATTGGTATATGGGACAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

188

Amino Acids

20.93

Weight (kDa)

11.66

Isoelectric Point (pI)

80.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001534)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33467 AT4G33467
fragaria_vesca	FvH4_1g13550
malus_domestica	MD02G1150700.v1.1 MD15G1265300.v1.1
prunus_persica	Prupe.7G152300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0101941 RchiOBHm_Chr7g0231621
rosa_laevigata	RLG00000003218 RLG00000003459 RLG00000005525 RLG00000005735 RLG00000008080 RLG00000009250 RLG00000012890 RLG00000014921 RLG00000016044 RLG00000017118 RLG00000017262 RLG00000018139 RLG00000018892 RLG00000019095 RLG00000020815 RLG00000023064 RLG00000024324 RLG00000024611 RLG00000024901 RLG00000025131 RLG00000026573 RLG00000028471 RLG00000029991 RLG00000030471 RLG00000033464 RLG00000033615
rosa_multiflora	Rmu_sc0000697.1_g000010 Rmu_sc0004767.1_g000002 Rmu_sc0012270.1_g000006
rosa_roxburghii	Rroxscaffold_2G00132820 Rroxscaffold_2G00140910 Rroxscaffold_3G00223440 Rroxscaffold_3G00265480 Rroxscaffold_5G00344290
rosa_rugosa	Rorug02G0103200 Rorug05G0210700 Rorug06G0152900
rosa_samantha	Rh2AG151300 Rh2BG156800 Rh2CG156600 Rh2DG156900 Rh6AG272100
rosa_wichuraiana	Rw2G011810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	397
Acc36I	ACCTGC	1 cut(s)	468
AccB1I	GGYRCC	1 cut(s)	268
AccI	GTMKAC	1 cut(s)	411
AccII	CGCG	2 cut(s)	260, 303
AciI	CCGC	4 cut(s)	123, 198, 303, 421
AclWI	GGATC	1 cut(s)	323
AcyI	GRCGYC	2 cut(s)	405, 452
AfaI	GTAC	3 cut(s)	288, 335, 440
AfiI	CCNNNNNNNGG	3 cut(s)	50, 53, 138
AjnI	CCWGG	1 cut(s)	271
AluBI	AGCT	3 cut(s)	169, 311, 561
AluI	AGCT	3 cut(s)	169, 311, 561
AlwI	GGATC	1 cut(s)	323
Ama87I	CYCGRG	2 cut(s)	177, 225
AoxI	GGCC	4 cut(s)	35, 41, 469, 506
ApeKI	GCWGC	3 cut(s)	321, 354, 433
Asp700I	GAANNNNTTC	1 cut(s)	168
AspLEI	GCGC	1 cut(s)	303
AspS9I	GGNCC	1 cut(s)	506
AsuC2I	CCSGG	1 cut(s)	48
AvaI	CYCGRG	2 cut(s)	177, 225
BaeGI	GKGCMC	1 cut(s)	271
BanI	GGYRCC	1 cut(s)	268
BbvI	GCAGC	3 cut(s)	333, 341, 420
BccI	CCATC	2 cut(s)	113, 366
BceAI	ACGGC	2 cut(s)	269, 421
BcgI	CGANNNNNNTGC	2 cut(s)	190, 224
BciT130I	CCWGG	1 cut(s)	273
BcnI	CCSGG	1 cut(s)	48
BfaI	CTAG	5 cut(s)	6, 99, 510, 516, 562
BfuAI	ACCTGC	1 cut(s)	468
BisI	GCNGC	4 cut(s)	199, 322, 355, 434
BlsI	GCNGC	4 cut(s)	200, 323, 356, 435
Bme1390I	CCNGG	2 cut(s)	48, 273
BmeT110I	CYCGRG	2 cut(s)	177, 225
BmgT120I	GGNCC	1 cut(s)	506
BmiI	GGNNCC	2 cut(s)	129, 270
BmrFI	CCNGG	2 cut(s)	48, 273
BmrI	ACTGGG	2 cut(s)	391, 520
BmsI	GCATC	1 cut(s)	308
BmuI	ACTGGG	2 cut(s)	391, 520
BpmI	CTGGAG	2 cut(s)	358, 436
Bpu10I	CCTNAGC	1 cut(s)	473
BpuMI	CCSGG	1 cut(s)	48
BsaHI	GRCGYC	2 cut(s)	405, 452
BsaJI	CCNNGG	2 cut(s)	38, 272
BsaXI	ACNNNNNCTCC	4 cut(s)	69, 99, 270, 300
Bsc4I	CCNNNNNNNGG	3 cut(s)	50, 53, 138
Bse1I	ACTGG	4 cut(s)	341, 397, 419, 526
Bse3DI	GCAATG	2 cut(s)	166, 208
BseBI	CCWGG	1 cut(s)	273
BseDI	CCNNGG	2 cut(s)	38, 272
BseGI	GGATG	3 cut(s)	124, 235, 393
BseLI	CCNNNNNNNGG	3 cut(s)	50, 53, 138
BseMI	GCAATG	2 cut(s)	166, 208
BseMII	CTCAG	1 cut(s)	11
BseNI	ACTGG	4 cut(s)	341, 397, 419, 526
BseRI	GAGGAG	1 cut(s)	90
BseSI	GKGCMC	1 cut(s)	271
BseXI	GCAGC	3 cut(s)	333, 341, 420
BseYI	CCCAGC	2 cut(s)	105, 357
Bsh1236I	CGCG	2 cut(s)	260, 303
Bsh1285I	CGRYCG	1 cut(s)	307
BshFI	GGCC	4 cut(s)	37, 43, 471, 508
BshNI	GGYRCC	1 cut(s)	268
BsiEI	CGRYCG	1 cut(s)	307
BsiHKCI	CYCGRG	2 cut(s)	177, 225
BsiSI	CCGG	1 cut(s)	47
BslI	CCNNNNNNNGG	3 cut(s)	50, 53, 138
BsnI	GGCC	4 cut(s)	37, 43, 471, 508
BsoBI	CYCGRG	2 cut(s)	177, 225
Bsp1286I	GDGCHC	1 cut(s)	271
Bsp143I	GATC	1 cut(s)	328
Bsp68I	TCGCGA	1 cut(s)	260
BspACI	CCGC	4 cut(s)	123, 198, 303, 421
BspANI	GGCC	4 cut(s)	37, 43, 471, 508
BspCNI	CTCAG	1 cut(s)	12
BspFNI	CGCG	2 cut(s)	260, 303
BspLI	GGNNCC	2 cut(s)	129, 270
BspMI	ACCTGC	1 cut(s)	468
BspPI	GGATC	1 cut(s)	323
BspQI	GCTCTTC	1 cut(s)	159
BspT107I	GGYRCC	1 cut(s)	268
BsrDI	GCAATG	2 cut(s)	166, 208
BsrI	ACTGG	4 cut(s)	341, 397, 419, 526
BssECI	CCNNGG	2 cut(s)	38, 272
BssMI	GATC	1 cut(s)	328
BssNI	GRCGYC	2 cut(s)	405, 452
BssT1I	CCWWGG	1 cut(s)	38
Bst2UI	CCWGG	1 cut(s)	273
Bst4CI	ACNGT	2 cut(s)	194, 384
Bst6I	CTCTTC	2 cut(s)	159, 505
BstACI	GRCGYC	2 cut(s)	405, 452
BstC8I	GCNNGC	1 cut(s)	299
BstDEI	CTNAG	2 cut(s)	20, 473
BstF5I	GGATG	3 cut(s)	124, 235, 393
BstFNI	CGCG	2 cut(s)	260, 303
BstHHI	GCGC	1 cut(s)	303
BstKTI	GATC	1 cut(s)	331
BstMBI	GATC	1 cut(s)	328
BstMCI	CGRYCG	1 cut(s)	307
BstMWI	GCNNNNNNNGC	2 cut(s)	266, 373
BstNI	CCWGG	1 cut(s)	273
BstSCI	CCNGG	2 cut(s)	46, 271
BstSLI	GKGCMC	1 cut(s)	271
BstUI	CGCG	2 cut(s)	260, 303
BstV1I	GCAGC	3 cut(s)	333, 341, 420
BstXI	CCANNNNNNTGG	2 cut(s)	463, 533
BsuRI	GGCC	4 cut(s)	37, 43, 471, 508
BtsCI	GGATG	3 cut(s)	124, 235, 393
BtsIMutI	CAGTG	1 cut(s)	324
BtuMI	TCGCGA	1 cut(s)	260
BveI	ACCTGC	1 cut(s)	468
Cac8I	GCNNGC	1 cut(s)	299
CfoI	GCGC	1 cut(s)	303
Cfr13I	GGNCC	1 cut(s)	506
CseI	GACGC	2 cut(s)	394, 460
Csp6I	GTAC	3 cut(s)	287, 334, 439
CviAII	CATG	1 cut(s)	457
CviQI	GTAC	3 cut(s)	287, 334, 439
DdeI	CTNAG	2 cut(s)	20, 473
DpnI	GATC	1 cut(s)	330
DpnII	GATC	1 cut(s)	328
DrdI	GACNNNNNNGTC	1 cut(s)	397
DseDI	GACNNNNNNGTC	1 cut(s)	397
Eam1104I	CTCTTC	2 cut(s)	159, 505
EarI	CTCTTC	2 cut(s)	159, 505
Eco130I	CCWWGG	1 cut(s)	38
Eco147I	AGGCCT	1 cut(s)	37
Eco88I	CYCGRG	2 cut(s)	177, 225
EcoRII	CCWGG	1 cut(s)	271
EcoT14I	CCWWGG	1 cut(s)	38
ErhI	CCWWGG	1 cut(s)	38
FaeI	CATG	1 cut(s)	460
FaiI	YATR	3 cut(s)	458, 551, 553
FatI	CATG	1 cut(s)	456
FauI	CCCGC	1 cut(s)	116
FblI	GTMKAC	1 cut(s)	411
Fnu4HI	GCNGC	4 cut(s)	199, 322, 355, 434
FokI	GGATG	3 cut(s)	131, 242, 400
Fsp4HI	GCNGC	4 cut(s)	199, 322, 355, 434
FspBI	CTAG	5 cut(s)	6, 99, 510, 516, 562
GlaI	GCGC	1 cut(s)	302
GluI	GCNGC	4 cut(s)	199, 322, 355, 434
GsaI	CCCAGC	2 cut(s)	109, 361
GsuI	CTGGAG	2 cut(s)	358, 436
HaeIII	GGCC	4 cut(s)	37, 43, 471, 508
HapII	CCGG	1 cut(s)	47
HgaI	GACGC	2 cut(s)	394, 460
HhaI	GCGC	1 cut(s)	303
Hin1I	GRCGYC	2 cut(s)	405, 452
Hin1II	CATG	1 cut(s)	460
Hin6I	GCGC	1 cut(s)	301
HinP1I	GCGC	1 cut(s)	301
HincII	GTYRAC	1 cut(s)	412
HindII	GTYRAC	1 cut(s)	412
HinfI	GANTC	2 cut(s)	142, 223
HpaII	CCGG	1 cut(s)	47
Hpy166II	GTNNAC	1 cut(s)	412
Hpy188I	TCNGA	3 cut(s)	21, 141, 543
Hpy188III	TCNNGA	3 cut(s)	220, 227, 259
Hpy8I	GTNNAC	1 cut(s)	412
Hpy99I	CGWCG	8 cut(s)	138, 141, 255, 372, 381, 384, 410, 413
HpyAV	CCTTC	2 cut(s)	100, 233
HpyCH4III	ACNGT	2 cut(s)	194, 384
HpyCH4V	TGCA	2 cut(s)	62, 321
HpyF10VI	GCNNNNNNNGC	2 cut(s)	266, 373
HpyF3I	CTNAG	2 cut(s)	20, 473
Hsp92I	GRCGYC	2 cut(s)	405, 452
Hsp92II	CATG	1 cut(s)	460
HspAI	GCGC	1 cut(s)	301
Kzo9I	GATC	1 cut(s)	328
LguI	GCTCTTC	1 cut(s)	159
LmnI	GCTCC	1 cut(s)	339
Lsp1109I	GCAGC	3 cut(s)	333, 341, 420
LweI	GCATC	1 cut(s)	308
MaeI	CTAG	5 cut(s)	6, 99, 510, 516, 562
MaeIII	GTNAC	1 cut(s)	9
MalI	GATC	1 cut(s)	330
MboI	GATC	1 cut(s)	328
MboII	GAAGA	2 cut(s)	176, 492
MhlI	GDGCHC	1 cut(s)	271
MluCI	AATT	2 cut(s)	64, 150
MlyI	GAGTC	1 cut(s)	217
MmeI	TCCRAC	1 cut(s)	119
MnlI	CCTC	9 cut(s)	17, 27, 54, 68, 109, 287, 357, 403, 411
MroXI	GAANNNNTTC	1 cut(s)	168
MspI	CCGG	1 cut(s)	47
MspR9I	CCNGG	2 cut(s)	48, 273
MvaI	CCWGG	1 cut(s)	273
MvnI	CGCG	2 cut(s)	260, 303
MwoI	GCNNNNNNNGC	2 cut(s)	266, 373
NciI	CCSGG	1 cut(s)	48
NdeII	GATC	1 cut(s)	328
NlaIII	CATG	1 cut(s)	460
NlaIV	GGNNCC	2 cut(s)	129, 270
NruI	TCGCGA	1 cut(s)	260
PceI	AGGCCT	1 cut(s)	37
PciSI	GCTCTTC	1 cut(s)	159
PcsI	WCGNNNNNNNCGW	1 cut(s)	376
PdmI	GAANNNNTTC	1 cut(s)	168
PfeI	GAWTC	1 cut(s)	142
PkrI	GCNGC	4 cut(s)	200, 323, 356, 435
PleI	GAGTC	1 cut(s)	217
PpsI	GAGTC	1 cut(s)	217
Psp6I	CCWGG	1 cut(s)	271
PspFI	CCCAGC	2 cut(s)	105, 357
PspGI	CCWGG	1 cut(s)	271
PspN4I	GGNNCC	2 cut(s)	129, 270
PspPI	GGNCC	1 cut(s)	506
RruI	TCGCGA	1 cut(s)	260
RsaI	GTAC	3 cut(s)	288, 335, 440
RsaNI	GTAC	3 cut(s)	287, 334, 439
SalI	GTCGAC	1 cut(s)	410
SapI	GCTCTTC	1 cut(s)	159
SatI	GCNGC	4 cut(s)	199, 322, 355, 434
Sau3AI	GATC	1 cut(s)	328
Sau96I	GGNCC	1 cut(s)	506
SchI	GAGTC	1 cut(s)	217
ScrFI	CCNGG	2 cut(s)	48, 273
SduI	GDGCHC	1 cut(s)	271
SetI	ASST	9 cut(s)	11, 28, 32, 171, 244, 313, 395, 482, 563
SfaNI	GCATC	1 cut(s)	308
Sse9I	AATT	2 cut(s)	64, 150
SseBI	AGGCCT	1 cut(s)	37
SsiI	CCGC	4 cut(s)	123, 198, 303, 421
SspMI	CTAG	5 cut(s)	6, 99, 510, 516, 562
StuI	AGGCCT	1 cut(s)	37
StyD4I	CCNGG	2 cut(s)	46, 271
StyI	CCWWGG	1 cut(s)	38
TaaI	ACNGT	2 cut(s)	194, 384
TaqI	TCGA	2 cut(s)	307, 411
TasI	AATT	2 cut(s)	64, 150
TauI	GCSGC	1 cut(s)	201
TfiI	GAWTC	1 cut(s)	142
TscAI	CASTG	1 cut(s)	331
TseI	GCWGC	3 cut(s)	321, 354, 433
TspDTI	ATGAA	1 cut(s)	177
TspGWI	ACGGA	1 cut(s)	321
TspRI	CASTG	1 cut(s)	331
XmiI	GTMKAC	1 cut(s)	411
XmnI	GAANNNNTTC	1 cut(s)	168
XspI	CTAG	5 cut(s)	6, 99, 510, 516, 562

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.