RchiOBHm_Chr7g0231621

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0001534
Physical Location & Seq
Reverse (-)
55218747 .. 55219628
882 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20758

Sequence Viewer

Length: 378 bp
ATGCTTAGGCTACTCTCTCTGAGATGTGGGTGGAGGTCGTGGCCTCTTGGCGGCGGATCTGCAAATTGGACTGGAGGAGATGGGATTTCCCTCTCATCGGGTCGACGGGAGATTGAAGGCGGCGGGGTTCTTCGTTGTCAGCTTCTCAAAATTTTGCTTCTTGTTTTCTTGGTTGGGGTCGTCTGCTTTGGCAATAGCGTTGGTAATCCTAGGTGGCGCAAGGCAGTGGCGTTGGGATGTGATCCTGGGCTATCTGGATCGGTGACGGTCTCGGGGTCTCGACGCTTGGTGCTGCTTGAGCAAGAAGATCTGGTGACTGCGCTCGGCTGGGGTAGTGACTCTTTTGACAGTCCCACAAGGATGTGTCATTATGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

13.36

Weight (kDa)

9.06

Isoelectric Point (pI)

57.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 103
AciI CCGC 4 cut(s) 51, 54, 120, 123
AclWI GGATC 3 cut(s) 64, 236, 265
AcsI RAATTY 1 cut(s) 150
AfiI CCNNNNNNNGG 2 cut(s) 50, 97
AgsI TTSAA 1 cut(s) 116
AjnI CCWGG 1 cut(s) 244
AluBI AGCT 1 cut(s) 142
AluI AGCT 1 cut(s) 142
Alw26I GTCTC 2 cut(s) 274, 282
AlwI GGATC 3 cut(s) 64, 236, 265
Ama87I CYCGRG 1 cut(s) 271
AoxI GGCC 1 cut(s) 41
ApeKI GCWGC 1 cut(s) 292
ApoI RAATTY 1 cut(s) 150
AspA2I CCTAGG 1 cut(s) 209
AspLEI GCGC 2 cut(s) 219, 322
AsuHPI GGTGA 2 cut(s) 274, 325
AvaI CYCGRG 1 cut(s) 271
AvrII CCTAGG 1 cut(s) 209
BbvI GCAGC 1 cut(s) 279
BccI CCATC 1 cut(s) 74
BciT130I CCWGG 1 cut(s) 246
BcoDI GTCTC 2 cut(s) 274, 282
BfaI CTAG 1 cut(s) 210
BglII AGATCT 1 cut(s) 307
BisI GCNGC 3 cut(s) 52, 121, 293
BlnI CCTAGG 1 cut(s) 209
BlsI GCNGC 3 cut(s) 53, 122, 294
Bme1390I CCNGG 1 cut(s) 246
BmeT110I CYCGRG 1 cut(s) 271
BmrFI CCNGG 1 cut(s) 246
BpmI CTGGAG 1 cut(s) 93
Bpu10I CCTNAGC 1 cut(s) 5
BpuEI CTTGAG 1 cut(s) 317
BsaI GGTCTC 2 cut(s) 274, 282
BsaJI CCNNGG 2 cut(s) 209, 245
Bsc4I CCNNNNNNNGG 2 cut(s) 50, 97
Bse1I ACTGG 1 cut(s) 76
BseBI CCWGG 1 cut(s) 246
BseDI CCNNGG 2 cut(s) 209, 245
BseGI GGATG 2 cut(s) 242, 366
BseLI CCNNNNNNNGG 2 cut(s) 50, 97
BseMII CTCAG 1 cut(s) 11
BseNI ACTGG 1 cut(s) 76
BseRI GAGGAG 1 cut(s) 90
BseXI GCAGC 1 cut(s) 279
BseYI CCCAGC 1 cut(s) 327
BshFI GGCC 1 cut(s) 43
BsiHKCI CYCGRG 1 cut(s) 271
BslFI GGGAC 1 cut(s) 336
BslI CCNNNNNNNGG 2 cut(s) 50, 97
BsmAI GTCTC 2 cut(s) 274, 282
BsmFI GGGAC 1 cut(s) 336
BsnI GGCC 1 cut(s) 43
Bso31I GGTCTC 2 cut(s) 274, 282
BsoBI CYCGRG 1 cut(s) 271
Bsp143I GATC 4 cut(s) 56, 241, 257, 307
BspACI CCGC 4 cut(s) 51, 54, 120, 123
BspANI GGCC 1 cut(s) 43
BspCNI CTCAG 1 cut(s) 12
BspPI GGATC 3 cut(s) 64, 236, 265
BspTNI GGTCTC 2 cut(s) 274, 282
BsrI ACTGG 1 cut(s) 76
BssECI CCNNGG 2 cut(s) 209, 245
BssMI GATC 4 cut(s) 56, 241, 257, 307
BssT1I CCWWGG 1 cut(s) 209
Bst2UI CCWGG 1 cut(s) 246
Bst4CI ACNGT 2 cut(s) 268, 350
BstDEI CTNAG 2 cut(s) 5, 20
BstF5I GGATG 2 cut(s) 242, 366
BstHHI GCGC 2 cut(s) 219, 322
BstKTI GATC 4 cut(s) 59, 244, 260, 310
BstMAI GTCTC 2 cut(s) 274, 282
BstMBI GATC 4 cut(s) 56, 241, 257, 307
BstMWI GCNNNNNNNGC 1 cut(s) 298
BstNI CCWGG 1 cut(s) 246
BstSCI CCNGG 1 cut(s) 244
BstV1I GCAGC 1 cut(s) 279
BstX2I RGATCY 2 cut(s) 56, 307
BstYI RGATCY 2 cut(s) 56, 307
BsuRI GGCC 1 cut(s) 43
BtsCI GGATG 2 cut(s) 242, 366
BtsI GCAGTG 1 cut(s) 231
BtsIMutI CAGTG 1 cut(s) 231
CfoI GCGC 2 cut(s) 219, 322
CseI GACGC 1 cut(s) 291
CviJI RGCY 5 cut(s) 10, 43, 142, 250, 327
CviKI_1 RGCY 5 cut(s) 10, 43, 142, 250, 327
DdeI CTNAG 2 cut(s) 5, 20
DpnI GATC 4 cut(s) 58, 243, 259, 309
DpnII GATC 4 cut(s) 56, 241, 257, 307
EciI GGCGGA 1 cut(s) 69
Eco130I CCWWGG 1 cut(s) 209
Eco31I GGTCTC 2 cut(s) 274, 282
Eco88I CYCGRG 1 cut(s) 271
EcoRII CCWGG 1 cut(s) 244
EcoT14I CCWWGG 1 cut(s) 209
ErhI CCWWGG 1 cut(s) 209
FaiI YATR 1 cut(s) 372
FaqI GGGAC 1 cut(s) 336
FauI CCCGC 1 cut(s) 116
FblI GTMKAC 1 cut(s) 103
Fnu4HI GCNGC 3 cut(s) 52, 121, 293
FokI GGATG 2 cut(s) 249, 373
Fsp4HI GCNGC 3 cut(s) 52, 121, 293
FspBI CTAG 1 cut(s) 210
GlaI GCGC 2 cut(s) 218, 321
GluI GCNGC 3 cut(s) 52, 121, 293
GsaI CCCAGC 1 cut(s) 331
GsuI CTGGAG 1 cut(s) 93
HaeIII GGCC 1 cut(s) 43
HgaI GACGC 1 cut(s) 291
HhaI GCGC 2 cut(s) 219, 322
Hin6I GCGC 2 cut(s) 217, 320
HinP1I GCGC 2 cut(s) 217, 320
HincII GTYRAC 1 cut(s) 104
HindII GTYRAC 1 cut(s) 104
HinfI GANTC 1 cut(s) 338
HphI GGTGA 2 cut(s) 274, 325
Hpy166II GTNNAC 1 cut(s) 104
Hpy188I TCNGA 1 cut(s) 21
Hpy188III TCNNGA 2 cut(s) 255, 279
Hpy8I GTNNAC 1 cut(s) 104
Hpy99I CGWCG 2 cut(s) 108, 285
HpyAV CCTTC 1 cut(s) 110
HpyCH4III ACNGT 2 cut(s) 268, 350
HpyCH4V TGCA 1 cut(s) 62
HpyF10VI GCNNNNNNNGC 1 cut(s) 298
HpyF3I CTNAG 2 cut(s) 5, 20
HspAI GCGC 2 cut(s) 217, 320
Kzo9I GATC 4 cut(s) 56, 241, 257, 307
LpnPI CCDG 6 cut(s) 57, 231, 240, 258, 296, 313
Lsp1109I GCAGC 1 cut(s) 279
MaeI CTAG 1 cut(s) 210
MaeIII GTNAC 3 cut(s) 262, 313, 335
MalI GATC 4 cut(s) 58, 243, 259, 309
MboI GATC 4 cut(s) 56, 241, 257, 307
MboII GAAGA 2 cut(s) 122, 317
MflI RGATCY 2 cut(s) 56, 307
MluCI AATT 2 cut(s) 64, 150
MlyI GAGTC 1 cut(s) 332
MnlI CCTC 4 cut(s) 27, 54, 68, 101
MslI CAYNNNNRTG 1 cut(s) 359
MspR9I CCNGG 1 cut(s) 246
MvaI CCWGG 1 cut(s) 246
MwoI GCNNNNNNNGC 1 cut(s) 298
NdeII GATC 4 cut(s) 56, 241, 257, 307
NmeAIII GCCGAG 1 cut(s) 303
NmuCI GTSAC 3 cut(s) 262, 313, 335
PkrI GCNGC 3 cut(s) 53, 122, 294
PleI GAGTC 1 cut(s) 332
PpsI GAGTC 1 cut(s) 332
Psp6I CCWGG 1 cut(s) 244
PspFI CCCAGC 1 cut(s) 327
PspGI CCWGG 1 cut(s) 244
PsuI RGATCY 2 cut(s) 56, 307
RseI CAYNNNNRTG 1 cut(s) 359
SalI GTCGAC 1 cut(s) 102
SatI GCNGC 3 cut(s) 52, 121, 293
Sau3AI GATC 4 cut(s) 56, 241, 257, 307
SchI GAGTC 1 cut(s) 332
ScrFI CCNGG 1 cut(s) 246
SetI ASST 3 cut(s) 38, 144, 215
SmiMI CAYNNNNRTG 1 cut(s) 359
SmlI CTYRAG 1 cut(s) 296
SmoI CTYRAG 1 cut(s) 296
Sse9I AATT 2 cut(s) 64, 150
SsiI CCGC 4 cut(s) 51, 54, 120, 123
SspMI CTAG 1 cut(s) 210
StyD4I CCNGG 1 cut(s) 244
StyI CCWWGG 1 cut(s) 209
TaaI ACNGT 2 cut(s) 268, 350
TaqI TCGA 2 cut(s) 103, 280
TasI AATT 2 cut(s) 64, 150
TauI GCSGC 2 cut(s) 54, 123
TscAI CASTG 1 cut(s) 231
TseFI GTSAC 3 cut(s) 262, 313, 335
TseI GCWGC 1 cut(s) 292
Tsp45I GTSAC 3 cut(s) 262, 313, 335
TspRI CASTG 1 cut(s) 231
XapI RAATTY 1 cut(s) 150
XmaJI CCTAGG 1 cut(s) 209
XmiI GTMKAC 1 cut(s) 103
XspI CTAG 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.