FvH4_1g13550

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0001534
Physical Location & Seq
Reverse (-)
7449782 .. 7450970
1189 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g13550.t1

Sequence Viewer

Length: 300 bp
ATGGAAGGCGCATCGCAGCTGCTACGGATTGGAAGGAAATCATCAATAGAAAGTGAGCCGAGAACGCTAGGGTTTCATCAAATCAAGTATGCAAGGGAGGCAGCTGAGTATGTAATGAATACAAAGAATATAGAAGAAGCAGAGCGCATTTTCACCGAGGGGTTGGTGCCGGTGGCGAGTGGGATTACTGTGATGAAGCAAAATGGAGACGAAGTGACGGATTCGGTGGAGGAATTTGAGTATTCAGCACATCATTTCCGATTATCAGAACTAAGGGATGTAGTAACAGCCCCATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

11.19

Weight (kDa)

5.02

Isoelectric Point (pI)

52.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 166
AcsI RAATTY 1 cut(s) 233
AluBI AGCT 2 cut(s) 19, 104
AluI AGCT 2 cut(s) 19, 104
Alw26I GTCTC 1 cut(s) 201
ApeKI GCWGC 3 cut(s) 16, 19, 101
ApoI RAATTY 1 cut(s) 233
AspLEI GCGC 2 cut(s) 11, 147
AsuHPI GGTGA 1 cut(s) 145
BanI GGYRCC 1 cut(s) 166
BbvI GCAGC 3 cut(s) 6, 28, 113
BcoDI GTCTC 1 cut(s) 201
BfaI CTAG 1 cut(s) 68
BisI GCNGC 3 cut(s) 17, 20, 102
BlsI GCNGC 3 cut(s) 18, 21, 103
BmiI GGNNCC 1 cut(s) 168
BmsI GCATC 1 cut(s) 20
BsaJI CCNNGG 1 cut(s) 156
BsaXI ACNNNNNCTCC 2 cut(s) 198, 228
Bse118I RCCGGY 1 cut(s) 169
BseDI CCNNGG 1 cut(s) 156
BseGI GGATG 1 cut(s) 283
BseMII CTCAG 1 cut(s) 96
BseXI GCAGC 3 cut(s) 6, 28, 113
BshNI GGYRCC 1 cut(s) 166
BsiSI CCGG 1 cut(s) 170
BsmAI GTCTC 1 cut(s) 201
BsmBI CGTCTC 1 cut(s) 201
BspCNI CTCAG 1 cut(s) 97
BspLI GGNNCC 1 cut(s) 168
BspT107I GGYRCC 1 cut(s) 166
BsrFI RCCGGY 1 cut(s) 169
BssAI RCCGGY 1 cut(s) 169
BssECI CCNNGG 1 cut(s) 156
Bst4CI ACNGT 1 cut(s) 190
BstDEI CTNAG 2 cut(s) 105, 272
BstF5I GGATG 1 cut(s) 283
BstHHI GCGC 2 cut(s) 11, 147
BstMAI GTCTC 1 cut(s) 201
BstMWI GCNNNNNNNGC 2 cut(s) 64, 98
BstV1I GCAGC 3 cut(s) 6, 28, 113
BtsCI GGATG 1 cut(s) 283
CfoI GCGC 2 cut(s) 11, 147
Cfr10I RCCGGY 1 cut(s) 169
CviJI RGCY 4 cut(s) 19, 58, 104, 290
CviKI_1 RGCY 4 cut(s) 19, 58, 104, 290
DdeI CTNAG 2 cut(s) 105, 272
Esp3I CGTCTC 1 cut(s) 201
FaiI YATR 3 cut(s) 90, 111, 131
Fnu4HI GCNGC 3 cut(s) 17, 20, 102
FokI GGATG 1 cut(s) 290
Fsp4HI GCNGC 3 cut(s) 17, 20, 102
FspBI CTAG 1 cut(s) 68
GlaI GCGC 2 cut(s) 10, 146
GluI GCNGC 3 cut(s) 17, 20, 102
HapII CCGG 1 cut(s) 170
HhaI GCGC 2 cut(s) 11, 147
Hin6I GCGC 2 cut(s) 9, 145
HinP1I GCGC 2 cut(s) 9, 145
HinfI GANTC 1 cut(s) 221
HpaII CCGG 1 cut(s) 170
HphI GGTGA 1 cut(s) 145
Hpy188I TCNGA 2 cut(s) 260, 268
HpyAV CCTTC 1 cut(s) 27
HpyCH4III ACNGT 1 cut(s) 190
HpyCH4V TGCA 1 cut(s) 92
HpyF10VI GCNNNNNNNGC 2 cut(s) 64, 98
HpyF3I CTNAG 2 cut(s) 105, 272
HspAI GCGC 2 cut(s) 9, 145
LpnPI CCDG 1 cut(s) 183
Lsp1109I GCAGC 3 cut(s) 6, 28, 113
LweI GCATC 1 cut(s) 20
MaeI CTAG 1 cut(s) 68
MaeIII GTNAC 2 cut(s) 214, 283
MboII GAAGA 1 cut(s) 146
MluCI AATT 1 cut(s) 233
MnlI CCTC 3 cut(s) 91, 151, 223
MspA1I CMGCKG 2 cut(s) 19, 104
MspI CCGG 1 cut(s) 170
MwoI GCNNNNNNNGC 2 cut(s) 64, 98
NlaIV GGNNCC 1 cut(s) 168
NmeAIII GCCGAG 1 cut(s) 84
NmuCI GTSAC 1 cut(s) 214
PfeI GAWTC 1 cut(s) 221
PkrI GCNGC 3 cut(s) 18, 21, 103
PspN4I GGNNCC 1 cut(s) 168
PvuII CAGCTG 2 cut(s) 19, 104
SatI GCNGC 3 cut(s) 17, 20, 102
SetI ASST 2 cut(s) 21, 106
SfaNI GCATC 1 cut(s) 20
SgeI CNNG 7 cut(s) 72, 80, 97, 105, 169, 182, 189
Sse9I AATT 1 cut(s) 233
SspMI CTAG 1 cut(s) 68
TaaI ACNGT 1 cut(s) 190
TasI AATT 1 cut(s) 233
TfiI GAWTC 1 cut(s) 221
TseFI GTSAC 1 cut(s) 214
TseI GCWGC 3 cut(s) 16, 19, 101
Tsp45I GTSAC 1 cut(s) 214
TspDTI ATGAA 3 cut(s) 65, 131, 209
TspGWI ACGGA 2 cut(s) 40, 233
XapI RAATTY 1 cut(s) 233
XspI CTAG 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.